HHsearch alignment for GI: 254780991 and conserved domain: PRK12727

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=95.10  E-value=0.29  Score=28.03  Aligned_cols=97  Identities=25%  Similarity=0.255  Sum_probs=55.3

Q ss_pred             CCCCCCCHHHHH--HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH--------------HHHHCCC
Q ss_conf             212466214789--999999986359668732576457899999999731898699984--------------5875357
Q gi|254780991|r  583 LRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI--------------NLLREGL  646 (805)
Q Consensus       583 ~R~l~~~~tkr~--~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt--------------~~~akGl  646 (805)
T Consensus       380 ~valit~DtyRiga~eQL~~y~~ilgvpv~~~---~~~~~l~~~l~~l~~~~l-vliDTaG~~~rd~~~~~~~~~l~~--  453 (557)
T PRK12727        380 DVALVTTDTQRVGGREQLHSYGRQLGIAVHEA---DSAESLLDLLERLRDYKL-VLIDTAGMGQRDRALAAQLNWLRA--  453 (557)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHCCEEEEE---CCHHHHHHHHHHHCCCCE-EEEECCCCCCCCHHHHHHHHHHHC--
T ss_conf             18999726640879999999999839757982---899999999998369998-999499988469999999998751--


Q ss_pred             CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEEC
Q ss_conf             8777117999628856744460137766543127-99866999824
Q gi|254780991|r  647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD  691 (805)
Q Consensus       647 D~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad  691 (805)
T Consensus       454 -~~~~~~~Lvl~a~~-----~~~~l~~~~~~~~~~~~~~~i~TKlD  493 (557)
T PRK12727        454 -ARQVTSLLVLPANA-----HFSDLDEVVRRFAHAKPQGVVLTKLD  493 (557)
T ss_pred             -CCCCCEEEEEECCC-----CHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf             -47763599996889-----98999999998537998748996143