HHsearch alignment for GI: 254780991 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=95.10 E-value=0.29 Score=28.03 Aligned_cols=97 Identities=25% Similarity=0.255 Sum_probs=55.3
Q ss_pred CCCCCCCHHHHH--HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH--------------HHHHCCC
Q ss_conf 212466214789--999999986359668732576457899999999731898699984--------------5875357
Q gi|254780991|r 583 LRILLTVLTKRM--AEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI--------------NLLREGL 646 (805)
Q Consensus 583 ~R~l~~~~tkr~--~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt--------------~~~akGl 646 (805)
T Consensus 380 ~valit~DtyRiga~eQL~~y~~ilgvpv~~~---~~~~~l~~~l~~l~~~~l-vliDTaG~~~rd~~~~~~~~~l~~-- 453 (557)
T PRK12727 380 DVALVTTDTQRVGGREQLHSYGRQLGIAVHEA---DSAESLLDLLERLRDYKL-VLIDTAGMGQRDRALAAQLNWLRA-- 453 (557)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCEEEEE---CCHHHHHHHHHHHCCCCE-EEEECCCCCCCCHHHHHHHHHHHC--
T ss_conf 18999726640879999999999839757982---899999999998369998-999499988469999999998751--
Q ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEEEEC
Q ss_conf 8777117999628856744460137766543127-99866999824
Q gi|254780991|r 647 DIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NVNSKVILYAD 691 (805)
Q Consensus 647 D~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~~G~~il~ad 691 (805)
T Consensus 454 -~~~~~~~Lvl~a~~-----~~~~l~~~~~~~~~~~~~~~i~TKlD 493 (557)
T PRK12727 454 -ARQVTSLLVLPANA-----HFSDLDEVVRRFAHAKPQGVVLTKLD 493 (557)
T ss_pred -CCCCCEEEEEECCC-----CHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf -47763599996889-----98999999998537998748996143