HHsearch alignment for GI: 254780991 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=99.96 E-value=1.1e-24 Score=203.45 Aligned_cols=422 Identities=19% Similarity=0.211 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHHHHHHCC--CCEEEEEE
Q ss_conf 3899999999887397337998633764699999999971----99789993163468999999998678--98389986
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAM----QRPAIVMAPNKILAAQLYSEFKNFFP--HNAVEYFV 226 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~----gr~aLvLvPei~La~QL~~rfk~~Fp--~n~V~~f~ 226 (805)
T Consensus 20 Q~el~~~Al~----~--NtiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~lt 93 (764)
T PRK13766 20 QQLLAAKALK----G--NTLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVVLT 93 (764)
T ss_pred HHHHHHHHHH----C--CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9999999985----8--989995998668999999999999748988999858888999999999997099955289998
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHC----CCCCHHHHHCCEEEEECCCC
Q ss_conf 21344442101555432102210358899999999999985499849982778961----68983477225799941981
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIY----GIGSVESYSQMIVQLKIGDS 302 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIf----gl~~P~~~lglIIvdEehd~ 302 (805)
T Consensus 94 G~~----------------------~---~~~r~~~w~-----~~~Viv~TPQvl~ndL~~g~i~l~dv~lLVfDEaHha 143 (764)
T PRK13766 94 GEI----------------------S---PEKRAALWE-----KAKVIVATPQVIENDLLAGRISLEDVSLLIFDEAHRA 143 (764)
T ss_pred CCC----------------------C---HHHHHHHHC-----CCCEEEECCHHHHHHHHHCCCCHHHCCEEEEECCCCC
T ss_conf 887----------------------8---276899860-----7999999908999999829867888228999746666
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEC-CCCCHHHHH---HHHCCCCCCHHHHHCCCCCCCCHHHHCCCCC
Q ss_conf 117875323431176563387754533187247831-788877888---7310444200222101666400111000010
Q gi|254780991|r 303 VEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEI-FPSHLEDVA---WRVSMFGNDIEEISEFYPLTGQKIRNVETIK 378 (805)
Q Consensus 303 ~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILds-atps~Es~~---~Rie~f~deIe~I~~fDplT~~~~~~~~~~~ 378 (805)
T Consensus 144 ~Gnh-~Y~~I~~~y~~----------~~~~PrILGLTASPGs~~e~I~ev~~nL~i~~ie~rte~d~dv~~yv~~~~ie- 211 (764)
T PRK13766 144 VGNY-AYVFIAERYHE----------DAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVKTEDDPDVRPYVHKVKVE- 211 (764)
T ss_pred CCCC-CHHHHHHHHHH----------CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEE-
T ss_conf 6776-28999999985----------37785588503688764489999998659872896144443445433567327-
Q ss_pred CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 00000002563678875455899899899887544332110---------012444477775332112014510113331
Q gi|254780991|r 379 IYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEA---------QRLEQRITYDLEMLETTGSCQSIENYSRYL 449 (805)
Q Consensus 379 i~Pa~~~v~~~e~l~~a~~~i~~el~~rl~~~~~~~~~~ea---------~rL~qR~~~dle~l~e~G~~~gienyS~~L 449 (805)
T Consensus 212 ----~i~V~l~~~~~~i~~~l~~~l~~~l~~L~~~~~~~~~~~~~sk~~l~~~~~~~~~~i~~~~~~~~-~~~~~~a~~~ 286 (764)
T PRK13766 212 ----WIRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKRIQQEIARGDPEGY-EAISIHAEAM 286 (764)
T ss_pred ----EEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHH
T ss_conf ----99807978999999999999999999999669700455546899999999999998864687999-9999999999
Q ss_pred CCCCC-----CCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 14465-----5562023302654421321012344754454324565413332357665544432221110100121555
Q gi|254780991|r 450 TGRNP-----GEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPT 524 (805)
Q Consensus 450 ~~r~~-----ge~P~tL~dY~p~d~ll~idesh~~~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~ 524 (805)
T Consensus 287 kl~~a~ell~tqg~~~~~~yl~~------------------------------------------------------l~~ 312 (764)
T PRK13766 287 KLRHAVELLETQGVEALRRYLER------------------------------------------------------LRE 312 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------HHH
T ss_conf 99999999998518999999999------------------------------------------------------997
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH---CCCCCCCCCCEECCCCCHHHHHHHHHHH--HHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 4544468675420132200234320---1244677200001331016889999998--6302321246621478999999
Q gi|254780991|r 525 TIVVSATPGSWELEQCQGIIVEQII---RPTGLVDPPVEIRSARTQVEDVYDEINL--AAQQGLRILLTVLTKRMAEDLT 599 (805)
Q Consensus 525 ~~~~satPg~~e~e~~~~~~~eqi~---rptg~idp~ieir~~~~qvddl~~ei~~--~~~~~~R~l~~~~tkr~~e~l~ 599 (805)
T Consensus 313 ~~~~~~~k~~k~l~~--d~~~~~~~~~~~~~~~~hP---------Kl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~ 381 (764)
T PRK13766 313 EARSSGSKASKRLVE--DPRFKKAVRLLKELDIEHP---------KLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIV 381 (764)
T ss_pred HCCCCCCHHHHHHHH--CHHHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHH
T ss_conf 301333267899875--8778999998764467893---------79999999999972699980899927679999999
Q ss_pred HHHHHCCCEEEECCC--------CCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 998635966873257--------645789999999973189869998458753578777117999628856744460137
Q gi|254780991|r 600 EYLYERNIRVRYMHS--------EVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSL 671 (805)
Q Consensus 600 ~~~~~~~i~~~~~h~--------~~~~~~r~~il~~~~~g~~diLvgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~ 671 (805)
T Consensus 382 ~~L~~~~ik~~~fVGq~s~~~~kGmsqkeQ~evL~~FR~Ge~NvLVATSV~EEGLDIP~cdLVI~Yd~-----v~S~IR~ 456 (764)
T PRK13766 382 DLLNKNGIKAIRFVGQASRDGDKGMSQKEQIETLDRFRAGEYNVLVATSVAEEGLDIPSVDLVIFYEP-----VPSEIRS 456 (764)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECC-----CCCHHHH
T ss_conf 99865899722898368987888989899999999985799888987676644888877888999379-----9619999
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCHHH
Q ss_conf 76654312799866999824898899
Q gi|254780991|r 672 IQTIGRAARNVNSKVILYADTITKSI 697 (805)
Q Consensus 672 ~q~~GRagR~~~G~~il~ad~~t~~~ 697 (805)
T Consensus 457 IQR~GRTGR~r~G~v~vLi~~gt~de 482 (764)
T PRK13766 457 IQRKGRTGRQRGGRVVVLIAKGTRDE 482 (764)
T ss_pred HHHCCCCCCCCCCEEEEEEECCCHHH
T ss_conf 99746656778974999995686267