HHsearch alignment for GI: 254780991 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=93.90 E-value=0.5 Score=26.23 Aligned_cols=87 Identities=26% Similarity=0.299 Sum_probs=49.6
Q ss_pred HHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCC--EEEE--ECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf 999887397337998633764699999999971997--8999--316346899999999867898389986213444421
Q gi|254780991|r 160 LLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRP--AIVM--APNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPE 235 (805)
Q Consensus 160 L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr~--aLvL--vPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpE 235 (805)
T Consensus 155 L~~aV~~r-~NIlIsGgTGSGKTTllnALl~~IP~~eRIvtIEDt~EL~l~-----------~~n~V~l~~~~~~--~g- 219 (343)
T PRK13851 155 LHACVVGR-LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIP-----------HENHVRLLYSKNG--AG- 219 (343)
T ss_pred HHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCC-----------CCCEEEEEECCCC--CC-
T ss_conf 99999769-889998889861999999999628965527996115002589-----------9996899965898--88-
Q ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCH
Q ss_conf 0155543210221035889999999999998549984998277
Q gi|254780991|r 236 AYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSV 278 (805)
Q Consensus 236 ay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsr 278 (805)
T Consensus 220 ------------~~~vt-----~~~Ll~~aLRmrPDRIivGEv 245 (343)
T PRK13851 220 ------------LGAVT-----AEHLLQASLRMRPDRILLGEM 245 (343)
T ss_pred ------------CCCCC-----HHHHHHHHHCCCCCEEEEEEE
T ss_conf ------------58397-----999999986079982899852