HHsearch alignment for GI: 254780991 and conserved domain: TIGR00595
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=100.00 E-value=0 Score=470.52 Aligned_cols=384 Identities=21% Similarity=0.221 Sum_probs=288.8
Q ss_pred EEEEECCCCHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEC-CCCCCCCCCCCCCCCCHHH
Q ss_conf 998633764699999999971---997899931634689999999986789838998621-3444421015554321022
Q gi|254780991|r 172 LLLGVTGSGKTFTMAKVIEAM---QRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSY-YDYYQPEAYVPRTDTYIEK 247 (805)
Q Consensus 172 lL~GVTGSGKTevya~lI~~~---gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~-~~~yqpEay~p~~d~~i~k 247 (805)
T Consensus 1 ll~G~tGsGkte~y~~~~~~~l~~g~~~~~l~Pei~l~~q~~~~~~~~fg~-~~~~~h~~~l~----------------- 62 (524)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSALVLVPEIALTPQTLQRFKGRFGS-QVAVLHSGKLS----------------- 62 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCC-CHHHHCCCCCC-----------------
T ss_conf 954567886168889999999733771789704211016789999997187-20101001367-----------------
Q ss_pred HCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHH-CCCCCCHHHHHH
Q ss_conf 1035889999999999998549984998277896168983477225799941981117875323431-176563387754
Q gi|254780991|r 248 ESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVK-QQYKRQDIGIIR 326 (805)
Q Consensus 248 ~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~-~~Y~R~D~a~~R 326 (805)
T Consensus 63 --------~~~~~~~w~~~~~g~~~~v~G~rsa~f---~P~~~lglii~deehd~~-----yk~~~~~p~y~ar~~~~~~ 126 (524)
T TIGR00595 63 --------DSEKLDAWRKVKLGEALVVIGTRSALF---LPLKNLGLIIVDEEHDSS-----YKQEELPPRYHARDVAVYR 126 (524)
T ss_pred --------CHHHHHHHHHHHCCCCEEEECCCHHHH---CCCCCCCEEEEECCCCCC-----CCCCCCCCCCCHHHHHHHH
T ss_conf --------345688999985186005640303432---462114547873464521-----0013688552067889887
Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHCCCCC----CHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHH-HHHHH
Q ss_conf 53318724783178887788873104442----00222101666400111000010000000025636788754-55899
Q gi|254780991|r 327 GTFRVCGDSIEIFPSHLEDVAWRVSMFGN----DIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAM-KYIKE 401 (805)
Q Consensus 327 G~f~~rg~ILdsatps~Es~~~Rie~f~d----eIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~-~~i~~ 401 (805)
T Consensus 127 ~~~~~~p~~lgsatP~le~~~~~~~~~~~p~~~~~~l~~r~~------------~~~~p~~~~~d~~~~~~~~~~~~~~~ 194 (524)
T TIGR00595 127 AKLFNCPVVLGSATPSLESYHNAKRGKYRPQRHLLVLPRRVG------------GRKPPEVKLIDLRKEPRQGNRSFLSP 194 (524)
T ss_pred HHHCCCCEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHC------------CCCCCEEEEEECCCCCCCCCCCCCCH
T ss_conf 640488578805672278999987166562032111013205------------77575156762210002132102258
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCC--CCHHHHHCCCCCCEEEECCCCCC
Q ss_conf 8998998875443321100124444777753321120145101133311446555--62023302654421321012344
Q gi|254780991|r 402 ELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQSIENYSRYLTGRNPGE--PPPTLFEYIPEDSLLFVDESHVT 479 (805)
Q Consensus 402 el~~rl~~~~~~~~~~ea~rL~qR~~~dle~l~e~G~~~gienyS~~L~~r~~ge--~P~tL~dY~p~d~ll~idesh~~ 479 (805)
T Consensus 195 ~l~~~-~~~~~~~~~q~~~f~n~rg~~~~~~c~~cg~~~~cp~c~~~~~~h~~~~~g~p~l~ch~c---------~~~~~ 264 (524)
T TIGR00595 195 ELLTA-LEETLAAGEQAILFLNRRGYSPNLLCRSCGYVLECPNCDVSLTYHKKEGNGQPKLRCHYC---------GYQEP 264 (524)
T ss_pred HHHHH-HHHHHHCCCCEEEEEECCCCCCCEEECCCCCCEECCCCCEEEEEEEECCCCCCEEEEECC---------CCCCC
T ss_conf 99999-998874167068986155665300000267501056653023553213688620122105---------76677
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 75445432456541333235766554443222111010012155545444686754201322002343201244677200
Q gi|254780991|r 480 IPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPV 559 (805)
Q Consensus 480 ~pqi~~~~~~d~~RK~~l~~~gfrlp~~~~n~pl~f~e~~~~~~~~~~~satPg~~e~e~~~~~~~eqi~rptg~idp~i 559 (805)
T Consensus 265 ~p~~c--------------------p~c~~~~~----------------------------------------------- 277 (524)
T TIGR00595 265 VPKTC--------------------PACGSEDT----------------------------------------------- 277 (524)
T ss_pred CCCCC--------------------CCCCCCCC-----------------------------------------------
T ss_conf 75436--------------------44466430-----------------------------------------------
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEH
Q ss_conf 00133101688999999863023212466214789999999986359668732576457899999999731898699984
Q gi|254780991|r 560 EIRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGI 639 (805)
Q Consensus 560 eir~~~~qvddl~~ei~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~~~~~h~~~~~~~r~~il~~~~~g~~diLvgt 639 (805)
T Consensus 278 ------------------------~~~~g~G~~~~~~~l~~~~p~~~~~~~d~d~~~~~~~~~~~~~~f~~g~~d~l~Gt 333 (524)
T TIGR00595 278 ------------------------LKYKGLGTEKVEEELAKLFPGARIARLDSDTTSRKGAHEALLNQFANGKADILIGT 333 (524)
T ss_pred ------------------------EEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEECH
T ss_conf ------------------------12035427899999998558873676412212351468999999750784067500
Q ss_pred HHHHCCCCCCCCCEEEEECCC----CCCCCCCHHH---HHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHH
Q ss_conf 587535787771179996288----5674446013---7766543127-9986699982489889999999
Q gi|254780991|r 640 NLLREGLDIPECGLVAILDAD----KEGFLRSKTS---LIQTIGRAAR-NVNSKVILYADTITKSIQLAID 702 (805)
Q Consensus 640 ~~~akGlD~p~v~lV~i~dAD----~~~f~~~~~~---~~q~~GRagR-~~~G~~il~ad~~t~~~~~ai~ 702 (805)
T Consensus 334 q~~~kG~~fp~~~l~g~~~~d~~l~~~d~r~~e~~~~l~~q~~Gr~gr~~~~g~v~iqt~~P~~~~~~~~~ 404 (524)
T TIGR00595 334 QMIAKGHDFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGEVIIQTYNPGHPAIQAAL 404 (524)
T ss_pred HHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf 34431577442036778731200255421346778888887641002346887479973077516889876