HHsearch alignment for GI: 254780991 and conserved domain: TIGR00631

>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=94.31  E-value=0.36  Score=27.34  Aligned_cols=286  Identities=16%  Similarity=0.182  Sum_probs=153.6

Q ss_pred             HHHHHHH---------HHHHHHHHCC-CHHHHHHHHHCCCCCH---HHH--HHHHHHHHCCCHHHHHHHHCCCCCCCCCC
Q ss_conf             1677641---------3456664233-1368888874022100---036--77775101023234321000367532100
Q gi|254780991|r    8 FPKKDSR---------IQSISTRVDD-LDYFSFEEKQLEVDKT---MVA--DAMRRIRSEAGKHRKNAAKRMLIHQRENT   72 (805)
Q Consensus         8 ~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (805)
T Consensus       242 fPA~HyV~p~e~~~~Ai~~I~~EL~eRl~~f~~~~kllEaQRL~qRT~yDLEMl~e~G~C~GIEN--YSRhl~GR~~GEp  319 (667)
T TIGR00631       242 FPASHYVTPEERLERAIKEIEKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCSGIEN--YSRHLSGRKPGEP  319 (667)
T ss_pred             ECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCH--HCCCCCCCCCCCC
T ss_conf             05400025804799999999999999999998779517888898868877888750673377000--0002167776315


Q ss_pred             HHHHHCCHHHHHHH---H-------------HHHHHHHHHCCHHHHHHHHHHHHHCC---------CHH-------HHCC
Q ss_conf             02320124556542---2-------------67743211147558999999998739---------603-------2057
Q gi|254780991|r   73 ASKGEFQSQSSISM---S-------------EKQTREISEQTMTPSVQALARLIQSD---------NPL-------LKNG  120 (805)
Q Consensus        73 ~~~~~~~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~-------~~~~  120 (805)
T Consensus       320 P------~tLlDYF~gfP~DfLlviDESHVT~PQ~~GMY~GD~SR----K~~LVeYGFRLPSAlDNRPLkfeEF~~~~~Q  389 (667)
T TIGR00631       320 P------YTLLDYFIGFPEDFLLVIDESHVTLPQIGGMYNGDRSR----KQTLVEYGFRLPSALDNRPLKFEEFEERINQ  389 (667)
T ss_pred             C------CCHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCHHH----HHHHHHCCCCCCHHCCCCCCCHHHHHHHCCC
T ss_conf             9------64776504688650898840257502213441304676----5433202775300135878987999985598


Q ss_pred             CCCCCCCCCCCCCCC------------CC--CCCEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEECCCCHHHHH
Q ss_conf             402666788874215------------88--77547751888888438-9999999988739733799863376469999
Q gi|254780991|r  121 KIWTPHRSWSINNHS------------KD--ITFFQMQTDYHPSGDQP-AAIAQLLKGIHSREKVQLLLGVTGSGKTFTM  185 (805)
Q Consensus       121 ~~~~~~~~~~~~~~~------------~~--~~~f~l~~~~~P~gdQ~-~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevy  185 (805)
T Consensus       390 ~vyVSATP-G~~E~e~S~~~vvEQiiRPTGLlDP~i~---VRP~~gQvdDL~~EI~~R~~~-------------------  446 (667)
T TIGR00631       390 VVYVSATP-GDYELEQSGGNVVEQIIRPTGLLDPEIE---VRPTDGQVDDLLSEIRQRVAR-------------------  446 (667)
T ss_pred             EEEEECCC-CHHHHHHHCCCEEEEEECCCCCCCCEEE---EECCCCHHHHHHHHHHHHHHC-------------------
T ss_conf             89996388-5899973269158998737786488368---835851588889999999972-------------------


Q ss_pred             HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC--EEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHH-HHHHH
Q ss_conf             99999719978999316346899999999867898--3899862134444210155543210221035889999-99999
Q gi|254780991|r  186 AKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHN--AVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDR-MRHSA  262 (805)
Q Consensus       186 a~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n--~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~-~R~~a  262 (805)
T Consensus       447 -------~ERvLVT----TLTKkMAEdLTdYl~E~Gikv~YLHS--------------------------eIdt~ER~ei  489 (667)
T TIGR00631       447 -------NERVLVT----TLTKKMAEDLTDYLKELGIKVRYLHS--------------------------EIDTLERVEI  489 (667)
T ss_pred             -------CCCEEEE----EHHHHHHHHHHHHHHCCCCEEEEECC--------------------------HHHHHHHHHH
T ss_conf             -------8948998----20167788999997058837987145--------------------------5789999999


Q ss_pred             HHHHHCCCCEEEECC---HHHHCCCCCHHHHHCCEE-EEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEE--
Q ss_conf             999854998499827---789616898347722579-99419811178753234311765633877545331872478--
Q gi|254780991|r  263 TRSLLERNDCIVVSS---VSCIYGIGSVESYSQMIV-QLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSI--  336 (805)
Q Consensus       263 ~~~l~~~~~~IVVgs---rSAIfgl~~P~~~lglII-vdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~IL--  336 (805)
T Consensus       490 irdLR~G~fDVLVGINLLREGLD---lPEVSLVAILDADKEGF-------LRSerSL-----IQTIGRAARN~~G~VilY  554 (667)
T TIGR00631       490 IRDLRLGEFDVLVGINLLREGLD---LPEVSLVAILDADKEGF-------LRSERSL-----IQTIGRAARNVNGKVILY  554 (667)
T ss_pred             HHHHCCCCCEEEEECCHHHCCCC---CHHHHHHHHHCCCCCCC-------CCCCCHH-----HHHHHHHHHCCCCEEEEE
T ss_conf             99844788408860002002465---11488997632788899-------8663027-----889888752579659997


Q ss_pred             -ECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             -3178887788873104442002221016664001110000100000000256367887545589
Q gi|254780991|r  337 -EIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIK  400 (805)
Q Consensus       337 -dsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i~Pa~~~v~~~e~l~~a~~~i~  400 (805)
T Consensus       555 AD~iT~sM~~-AI------~ET~RRR-------------~~Q~~YNe~HgItP~ti~K~i~~~~~  599 (667)
T TIGR00631       555 ADKITDSMQK-AI------EETERRR-------------KIQIAYNEEHGITPQTIRKKIKDILD  599 (667)
T ss_pred             CCCCCHHHHH-HH------HHHHHHH-------------HHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             2870078999-99------9878889-------------99999997538978854056888777