>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.

Probab=97.23  E-value=0.00068  Score=47.70  Aligned_cols=70  Identities=21%  Similarity=0.231  Sum_probs=44.2

Q ss_pred             HHHHHHHHHCCCCCEEEEHHHHHCCCCC-CCCCEEEEECCCC-CCCCCCHHHHHHHHHHHCC---CC--CCEEEEEECC
Q ss_conf             9999999731898699984587535787-7711799962885-6744460137766543127---99--8669998248
Q gi|254780991|r  621 RIEIIRDLRLGKFDVLVGINLLREGLDI-PECGLVAILDADK-EGFLRSKTSLIQTIGRAAR---NV--NSKVILYADT  692 (805)
Q Consensus       621 r~~il~~~~~g~~diLvgt~~~akGlD~-p~v~lV~i~dAD~-~~f~~~~~~~~q~~GRagR---~~--~G~~il~ad~  692 (805)
T Consensus       521 ydr~i~e~~~~~~~~L~~e~~~~~G~~~~~~~~~~~--~e~~~ylvvpD~~tYiQASGRTSRl~aGGlTkGlS~Vl~dd  597 (1843)
T TIGR01054       521 YDRIIEEVLKFLREALKREDVLEKGIKESEDLSLVA--KEGKLYLVVPDVKTYIQASGRTSRLYAGGLTKGLSVVLVDD  597 (1843)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC--CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEECC
T ss_conf             568999888778887752025532654103447861--79725999668774424674156655423230534899654