HHsearch alignment for GI: 254780991 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.02 E-value=0.048 Score=33.87 Aligned_cols=167 Identities=18% Similarity=0.272 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 999999998873973379986337646999999999719--978999316346899999999867898389986213444
Q gi|254780991|r 155 AAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ--RPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYY 232 (805)
Q Consensus 155 ~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~g--r~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~y 232 (805)
T Consensus 117 ~v~~~~a~~---~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiTI-----------------EDPIEyvh~----- 171 (350)
T TIGR01420 117 PVLRELAER---PRGLILVTGPTGSGKSTTLASMIDYINKNKAGHIITI-----------------EDPIEYVHK----- 171 (350)
T ss_pred HHHHHHHHC---CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE-----------------ECCEEEEEC-----
T ss_conf 899999836---6993898768898678999999978740388882563-----------------177314104-----
Q ss_pred CCCCCCCCCCCCHHHHCCCCHH-----HHHHHHHHH-HHHHCCCCEEEECC-------HHHHCCCCCHHHHHCCEEEEEC
Q ss_conf 4210155543210221035889-----999999999-99854998499827-------7896168983477225799941
Q gi|254780991|r 233 QPEAYVPRTDTYIEKESSINEQ-----IDRMRHSAT-RSLLERNDCIVVSS-------VSCIYGIGSVESYSQMIVQLKI 299 (805)
Q Consensus 233 qpEay~p~~d~~i~k~~s~n~~-----i~~~R~~a~-~~l~~~~~~IVVgs-------rSAIfgl~~P~~~lglIIvdEe 299 (805)
T Consensus 172 -------------~~~sli~QREvG~DT~sF~-~ALraALReDPDvILiGE~RD~ET~~~AL~---AAE--TGH------ 226 (350)
T TIGR01420 172 -------------NKRSLINQREVGLDTLSFA-NALRAALREDPDVILIGEMRDLETVELALT---AAE--TGH------ 226 (350)
T ss_pred -------------CCEEEEECCCCCCCHHHHH-HHHHHHHCCCCCEEEEECCCCHHHHHHHHH---HHH--HCC------
T ss_conf -------------7702454362467545799-997684102898899825562789999998---742--131------
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCC
Q ss_conf 98111787532343117656338775453318724783178887788873104442002221016664001110000100
Q gi|254780991|r 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKI 379 (805)
Q Consensus 300 hd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~deIe~I~~fDplT~~~~~~~~~~~i 379 (805)
T Consensus 227 ------------LV~gTLHTnsA~------~ti~RIid~FP~~~~-~qiR~~La~~L~------Av~sQrL~p~~~G~GR 281 (350)
T TIGR01420 227 ------------LVFGTLHTNSAA------KTIERIIDVFPAEEQ-EQIRTQLAESLV------AVISQRLLPKKNGGGR 281 (350)
T ss_pred ------------HHHHHHHHHHHH------HHHHHHHCCCCHHHH-HHHHHHHHHHHH------HHHCCCCEEECCCCCE
T ss_conf ------------567666642388------876777425977566-899999987678------7700054223389625
Q ss_pred HHHHHCCCCHHHHHHHH
Q ss_conf 00000025636788754
Q gi|254780991|r 380 YANSHYVTPRPTLNTAM 396 (805)
Q Consensus 380 ~Pa~~~v~~~e~l~~a~ 396 (805)
T Consensus 282 v~~~Eil~~Tpav~~lI 298 (350)
T TIGR01420 282 VLAVEILINTPAVRNLI 298 (350)
T ss_pred EEEEEEECCCHHHHHHH
T ss_conf 88887521587899960