HHsearch alignment for GI: 254780991 and conserved domain: TIGR01587
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=98.77 E-value=9.8e-07 Score=68.97 Aligned_cols=112 Identities=23% Similarity=0.337 Sum_probs=86.9
Q ss_pred HHHH-HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCE---EEECCCCCCHH---HH---HHHHHHHHC-----CCCCEE
Q ss_conf 9999-986302321246621478999999998635966---87325764578---99---999999731-----898699
Q gi|254780991|r 572 YDEI-NLAAQQGLRILLTVLTKRMAEDLTEYLYERNIR---VRYMHSEVKTL---ER---IEIIRDLRL-----GKFDVL 636 (805)
Q Consensus 572 ~~ei-~~~~~~~~R~l~~~~tkr~~e~l~~~~~~~~i~---~~~~h~~~~~~---~r---~~il~~~~~-----g~~diL 636 (805)
T Consensus 258 ~~~~~~~~~~~~~~~~ii~NtV~~A~~~Y~~~kE~~p~~~~~~L~HsRF~~~DR~~KEde~~~l~e~~~S~~~~~~~~v~ 337 (424)
T TIGR01587 258 LERLLLEELKKGGKVLIIVNTVDRAQEFYQKLKEKAPELEEVILLHSRFTEKDRAKKEDEAELLKELKKSAWKDNEKFVI 337 (424)
T ss_pred HHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 66677874157786699985438999999998512652002124404477003667767999999851013544577069
Q ss_pred EEHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CC-CC-----EEEEEEC
Q ss_conf 98458753578777117999628856744460137766543127-99-86-----6999824
Q gi|254780991|r 637 VGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR-NV-NS-----KVILYAD 691 (805)
Q Consensus 637 vgt~~~akGlD~p~v~lV~i~dAD~~~f~~~~~~~~q~~GRagR-~~-~G-----~~il~ad 691 (805)
T Consensus 338 V~TQv~E~SlD~s~D~~iT--e------~aP~d~LiQR~GR~~R~~~~~~d~~~~~~y~~~~ 391 (424)
T TIGR01587 338 VATQVIEVSLDISVDVMIT--E------LAPIDSLIQRLGRLNRYGRKIGDIENREVYILTI 391 (424)
T ss_pred EEEEEEEEEEECCCCHHHH--H------CCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
T ss_conf 9878788864204441343--1------1501233554211101135657889872037852