HHsearch alignment for GI: 254780991 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=90.97 E-value=1.2 Score=23.46 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=77.3
Q ss_pred HHHCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 8873973379986337646999999999---7199789993163468999999998678983899862134444210155
Q gi|254780991|r 163 GIHSREKVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVP 239 (805)
Q Consensus 163 ~l~~g~~~qlL~GVTGSGKTevya~lI~---~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~S~~~~yqpEay~p 239 (805)
T Consensus 8 GvE~G-~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~---ER~~q~~~~~~~----------------- 66 (223)
T TIGR02237 8 GVERG-IITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSP---ERFKQIAEDRAL----------------- 66 (223)
T ss_pred CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHCCCC-----------------
T ss_conf 51203-588987589986789999999999861895899962898328---999998630588-----------------
Q ss_pred CCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 54321022103588999999999999854998499827789616898347722579994198111787532343117656
Q gi|254780991|r 240 RTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 (805)
Q Consensus 240 ~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~~P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R 319 (805)
T Consensus 67 ----------------------------------------------D~e~~~~~~iv~~~~~------f~eQ~~ai~~~~ 94 (223)
T TIGR02237 67 ----------------------------------------------DPERVLSNVIVFEVFD------FDEQEVAIQKTS 94 (223)
T ss_pred ----------------------------------------------CHHHHHCCEEEECCCC------HHHHHHHHHHHH
T ss_conf ----------------------------------------------9888841535523535------678999999999
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCC
Q ss_conf 3387754533187247831788877888731044420
Q gi|254780991|r 320 QDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGND 356 (805)
Q Consensus 320 ~D~a~~RG~f~~rg~ILdsatps~Es~~~Rie~f~de 356 (805)
T Consensus 95 -~~~~~~G-~~~~LvVvDs~t~-----~YRle~~~d~ 124 (223)
T TIGR02237 95 -KLIDRDG-DKADLVVVDSFTA-----LYRLERSDDR 124 (223)
T ss_pred -HHHHCCC-CEEEEEEEECCHH-----HHHHCCCCCC
T ss_conf -9986068-8331488815334-----5420257860