HHsearch alignment for GI: 254780991 and conserved domain: TIGR02759

>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.

Probab=94.54  E-value=0.039  Score=34.54  Aligned_cols=31  Identities=32%  Similarity=0.517  Sum_probs=26.2

Q ss_pred             CEEEEEEECCCCHHHHHHHHHH---HCCCCEEEE
Q ss_conf             3379986337646999999999---719978999
Q gi|254780991|r  169 KVQLLLGVTGSGKTFTMAKVIE---AMQRPAIVM  199 (805)
Q Consensus       169 ~~qlL~GVTGSGKTevya~lI~---~~gr~aLvL  199 (805)
T Consensus       209 Qh~L~~GTtG~GKs~~lr~LL~~iR~rGd~AIiY  242 (613)
T TIGR02759       209 QHILIHGTTGSGKSVALRKLLRWIRQRGDRAIIY  242 (613)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             2526645417438999999999998639858998