HHsearch alignment for GI: 254780991 and conserved domain: TIGR03117
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.15 E-value=0.0012 Score=45.93 Aligned_cols=124 Identities=14% Similarity=0.057 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHC-CCEEEECCCCCC-HHHHHHHHHHHHCCCCCEEEEHHHH
Q ss_conf 016889999998630232-1246621478999999998635-966873257645-7899999999731898699984587
Q gi|254780991|r 566 TQVEDVYDEINLAAQQGL-RILLTVLTKRMAEDLTEYLYER-NIRVRYMHSEVK-TLERIEIIRDLRLGKFDVLVGINLL 642 (805)
Q Consensus 566 ~qvddl~~ei~~~~~~~~-R~l~~~~tkr~~e~l~~~~~~~-~i~~~~~h~~~~-~~~r~~il~~~~~g~~diLvgt~~~ 642 (805)
T Consensus 453 ~~~~~l~~~l~~li~~~~Gr~LvLFTS~r~~~~~ae~l~~~l~~~~l~Qge~~~~~~l~~~~~~~f~~~~~svLfGT~Sf 532 (636)
T TIGR03117 453 TWLENVSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKNRLASAEQQFLALYANGIQPVLIAAGGA 532 (636)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 68999999999999870798899704099999999999722788658745764035689999998727899689867764
Q ss_pred HCCCCCC----------CCCEEEEECCCC---------------CCCCCCH--H---HHHHHHHHHCCC----CCCEEEE
Q ss_conf 5357877----------711799962885---------------6744460--1---377665431279----9866999
Q gi|254780991|r 643 REGLDIP----------ECGLVAILDADK---------------EGFLRSK--T---SLIQTIGRAARN----VNSKVIL 688 (805)
Q Consensus 643 akGlD~p----------~v~lV~i~dAD~---------------~~f~~~~--~---~~~q~~GRagR~----~~G~~il 688 (805)
T Consensus 533 WEGVDvpG~~~~~~~Gd~Ls~VII~rLPF~~p~~p~~~~r~~~~~g~~~~~vp~A~i~lkQG~GRLIRs~d~~D~G~vai 612 (636)
T TIGR03117 533 WTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHM 612 (636)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCEEEEE
T ss_conf 06625788666788777420665756998999878999999714998777799999999774573031477889658999
Q ss_pred E
Q ss_conf 8
Q gi|254780991|r 689 Y 689 (805)
Q Consensus 689 ~ 689 (805)
T Consensus 613 L 613 (636)
T TIGR03117 613 L 613 (636)
T ss_pred E
T ss_conf 6