HHsearch alignment for GI: 254780991 and conserved domain: TIGR03167
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=94.44 E-value=0.069 Score=32.65 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 397337998633764699999999971997899931634689999999986789
Q gi|254780991|r 166 SREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPH 219 (805)
Q Consensus 166 ~g~~~qlL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~ 219 (805)
T Consensus 125 ~~~~~~vl~G~TG~GKT~iL~~L-~~~G~qviDL-------EglAnHRGS~FG~ 170 (311)
T TIGR03167 125 QPFPLIVLGGMTGSGKTELLHAL-ANAGAQVLDL-------EGLANHRGSSFGA 170 (311)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH-HHCCCCCCCH-------HHHHHCCCCCCCC
T ss_conf 46876998788887789999999-9769974258-------9986314653468