HHsearch alignment for GI: 254780991 and conserved domain: cd00046

>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.15  E-value=5.2e-10  Score=93.49  Aligned_cols=133  Identities=20%  Similarity=0.151  Sum_probs=91.9

Q ss_pred             EEEEEEECCCCHHHHHHHHHHH-----CCCCEEEEECCHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             3799863376469999999997-----1997899931634689999999986789-838998621344442101555432
Q gi|254780991|r  170 VQLLLGVTGSGKTFTMAKVIEA-----MQRPAIVMAPNKILAAQLYSEFKNFFPH-NAVEYFVSYYDYYQPEAYVPRTDT  243 (805)
Q Consensus       170 ~qlL~GVTGSGKTevya~lI~~-----~gr~aLvLvPei~La~QL~~rfk~~Fp~-n~V~~f~S~~~~yqpEay~p~~d~  243 (805)
T Consensus         2 ~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------   70 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIK-----------   70 (144)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH-----------
T ss_conf             999988997179999999999999756897699974679999999999999748871799996136367-----------


Q ss_pred             CHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCC----CHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf             102210358899999999999985499849982778961689----8347722579994198111787532343117656
Q gi|254780991|r  244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG----SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR  319 (805)
Q Consensus       244 ~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~----~P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R  319 (805)
T Consensus        71 ------------------~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~----------~~~  122 (144)
T cd00046          71 ------------------QQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG----------FGL  122 (144)
T ss_pred             ------------------HHHHHHCCCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCC----------CHH
T ss_conf             ------------------7898745898499828899999997387655510099998888764379----------699


Q ss_pred             CHHHHHHHHHCCCCEEEECCCC
Q ss_conf             3387754533187247831788
Q gi|254780991|r  320 QDIGIIRGTFRVCGDSIEIFPS  341 (805)
Q Consensus       320 ~D~a~~RG~f~~rg~ILdsatp  341 (805)
T Consensus       123 ~~~~~~~~~~~~~~~l~lSATp  144 (144)
T cd00046         123 LGLKILLKLPKDRQVLLLSATP  144 (144)
T ss_pred             HHHHHHHHCCCCCCEEEECCCC
T ss_conf             9999999679999489982899