HHsearch alignment for GI: 254780991 and conserved domain: cd00046
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.15 E-value=5.2e-10 Score=93.49 Aligned_cols=133 Identities=20% Similarity=0.151 Sum_probs=91.9
Q ss_pred EEEEEEECCCCHHHHHHHHHHH-----CCCCEEEEECCHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 3799863376469999999997-----1997899931634689999999986789-838998621344442101555432
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMAKVIEA-----MQRPAIVMAPNKILAAQLYSEFKNFFPH-NAVEYFVSYYDYYQPEAYVPRTDT 243 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya~lI~~-----~gr~aLvLvPei~La~QL~~rfk~~Fp~-n~V~~f~S~~~~yqpEay~p~~d~ 243 (805)
T Consensus 2 ~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----------- 70 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIK----------- 70 (144)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH-----------
T ss_conf 999988997179999999999999756897699974679999999999999748871799996136367-----------
Q ss_pred CHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCC----CHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCC
Q ss_conf 102210358899999999999985499849982778961689----8347722579994198111787532343117656
Q gi|254780991|r 244 YIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGIG----SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKR 319 (805)
Q Consensus 244 ~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl~----~P~~~lglIIvdEehd~~~~~~~~~~l~~~~Y~R 319 (805)
T Consensus 71 ------------------~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~----------~~~ 122 (144)
T cd00046 71 ------------------QQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG----------FGL 122 (144)
T ss_pred ------------------HHHHHHCCCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCC----------CHH
T ss_conf ------------------7898745898499828899999997387655510099998888764379----------699
Q ss_pred CHHHHHHHHHCCCCEEEECCCC
Q ss_conf 3387754533187247831788
Q gi|254780991|r 320 QDIGIIRGTFRVCGDSIEIFPS 341 (805)
Q Consensus 320 ~D~a~~RG~f~~rg~ILdsatp 341 (805)
T Consensus 123 ~~~~~~~~~~~~~~~l~lSATp 144 (144)
T cd00046 123 LGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHHHHCCCCCCEEEECCCC
T ss_conf 9999999679999489982899