HHsearch alignment for GI: 254780991 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.66 E-value=1.1e-06 Score=68.62 Aligned_cols=151 Identities=23% Similarity=0.198 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH-HHHHC-------CCCEEEEECCHHHHHHHHHHHHHHCCC-
Q ss_conf 888438999999998873973379986337646999999-99971-------997899931634689999999986789-
Q gi|254780991|r 149 PSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAK-VIEAM-------QRPAIVMAPNKILAAQLYSEFKNFFPH- 219 (805)
Q Consensus 149 P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~-lI~~~-------gr~aLvLvPei~La~QL~~rfk~~Fp~- 219 (805)
T Consensus 22 pt~IQ~~~ip~il~----g-~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~ 96 (203)
T cd00268 22 PTPIQARAIPPLLS----G-RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCHHHHHHHHHHHC----C-CCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999977----9-988997579972228888699999861667689669999687999999999999850579
Q ss_pred -CEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCC----CCCHHHHHCCE
Q ss_conf -8389986213444421015554321022103588999999999999854998499827789616----89834772257
Q gi|254780991|r 220 -NAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYG----IGSVESYSQMI 294 (805)
Q Consensus 220 -n~V~~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfg----l~~P~~~lglI 294 (805)
T Consensus 97 ~i~~~~~~gg~~--------------------~~~~--------~~~l-~~~~~IlI~TPgrl~~~l~~~~~~l~~l~~l 147 (203)
T cd00268 97 NLKVVVIYGGTS--------------------IDKQ--------IRKL-KRGPHIVVATPGRLLDLLERGKLDLSKVKYL 147 (203)
T ss_pred CEEEEEEECCCC--------------------HHHH--------HHHH-HCCCEEEEECCHHHHHHHHCCCCCCCCCCEE
T ss_conf 838999838988--------------------7999--------9998-5387599968189999998488651322489
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH-CCCCEEEECCCCCHH
Q ss_conf 99941981117875323431176563387754533-187247831788877
Q gi|254780991|r 295 VQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTF-RVCGDSIEIFPSHLE 344 (805)
Q Consensus 295 IvdEehd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f-~~rg~ILdsatps~E 344 (805)
T Consensus 148 VlDEAD~ll~----------~gf~~-~i~~I~~~l~~~~Q~~lfSAT~~~~ 187 (203)
T cd00268 148 VLDEADRMLD----------MGFED-QIREILKLLPKDRQTLLFSATMPKE 187 (203)
T ss_pred EEECHHHHHH----------CCCHH-HHHHHHHHCCCCCEEEEEEECCCHH
T ss_conf 9985888874----------77699-9999998589677799998049988