HHsearch alignment for GI: 254780991 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.63 E-value=0.52 Score=26.07 Aligned_cols=39 Identities=31% Similarity=0.438 Sum_probs=27.5
Q ss_pred HHHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 99999999-88739733799863376469999999997199
Q gi|254780991|r 155 AAIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR 194 (805)
Q Consensus 155 ~Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr 194 (805)
T Consensus 6 ~~lD~~L~GGi~~G-~itEi~G~~GsGKTql~lqla~~~~~ 45 (235)
T cd01123 6 KALDELLGGGIETG-SITEIFGEFGSGKTQLCHQLAVTVQL 45 (235)
T ss_pred HHHHHHCCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 78996507996478-79999999998499999999999842