HHsearch alignment for GI: 254780991 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.96 E-value=0.94 Score=24.17 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=35.7
Q ss_pred EEEEEECCCCHHHHHHHHHHH---CCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 799863376469999999997---1997899931634689999999986
Q gi|254780991|r 171 QLLLGVTGSGKTFTMAKVIEA---MQRPAIVMAPNKILAAQLYSEFKNF 216 (805)
Q Consensus 171 qlL~GVTGSGKTevya~lI~~---~gr~aLvLvPei~La~QL~~rfk~~ 216 (805)
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~-~~~l~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES-PEELIENAESL 49 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHHC
T ss_conf 1587689999999999999999876997899995079-99999999983