HHsearch alignment for GI: 254780991 and conserved domain: cd01126
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.98 E-value=0.35 Score=27.42 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=35.4
Q ss_pred EEEEEEECCCCHHHHHH--HHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 37998633764699999--999971997899931634689999999986789838998
Q gi|254780991|r 170 VQLLLGVTGSGKTFTMA--KVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYF 225 (805)
Q Consensus 170 ~qlL~GVTGSGKTevya--~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f 225 (805)
T Consensus 1 H~lvig~tGsGKt~~~vip~ll-~~~~s~vv~D~Kgel~~~t~-~~~~~~G~-~v~v~ 55 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL-TWPGSVVVLDPKGENFELTS-EHRRALGR-KVFVF 55 (384)
T ss_pred CEEEECCCCCCHHHHHHHHHHH-HCCCCEEEEECCHHHHHHHH-HHHHHCCC-EEEEE
T ss_conf 9799889999731899999998-18998899948789999999-99998799-68998