HHsearch alignment for GI: 254780991 and conserved domain: cd01129
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.98 E-value=0.04 Score=34.43 Aligned_cols=39 Identities=28% Similarity=0.442 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 438999999998873973379986337646999999999719
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~g 193 (805)
T Consensus 67 ~~~~~l~~~~~---~~~GlilitGptGSGKtTtl~a~l~~~~ 105 (264)
T cd01129 67 ENLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHHHHHHH---CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99999999970---8998899978999977999999998643