HHsearch alignment for GI: 254780991 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.50 E-value=0.57 Score=25.78 Aligned_cols=37 Identities=32% Similarity=0.403 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 99999998873973379986337646999999999719
Q gi|254780991|r 156 AIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193 (805)
Q Consensus 156 Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~~g 193 (805)
T Consensus 14 ~~~~L~~~v~~~-~nIlIsG~tGSGKTTll~al~~~i~ 50 (186)
T cd01130 14 QAAYLWLAVEAR-KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999859-9899989999989999999996133