HHsearch alignment for GI: 254780991 and conserved domain: cd01365

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=96.25  E-value=0.014  Score=37.93  Aligned_cols=72  Identities=28%  Similarity=0.354  Sum_probs=47.1

Q ss_pred             CCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC---CC--
Q ss_conf             843899999----999887397337-99863376469999999997199789993163468999999998678---98--
Q gi|254780991|r  151 GDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP---HN--  220 (805)
Q Consensus       151 gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp---~n--  220 (805)
T Consensus        67 atQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G------~-----~~~~Giipr~~~~lF~~i~~~~~~~~  135 (356)
T cd01365          67 ASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMG------Y-----KEEKGIIPRLCEELFQRIESKKEQNL  135 (356)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECC------C-----CCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             889999999989999999789857999878899983768626------9-----87650999999999999973436781


Q ss_pred             EEEEEEECCCCCC
Q ss_conf             3899862134444
Q gi|254780991|r  221 AVEYFVSYYDYYQ  233 (805)
Q Consensus       221 ~V~~f~S~~~~yq  233 (805)
T Consensus       136 ~~~v~~S~~EIYn  148 (356)
T cd01365         136 SYEVEVSYMEIYN  148 (356)
T ss_pred             EEEEEEEEEEEEC
T ss_conf             5999999999967