HHsearch alignment for GI: 254780991 and conserved domain: cd01365
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=96.25 E-value=0.014 Score=37.93 Aligned_cols=72 Identities=28% Similarity=0.354 Sum_probs=47.1
Q ss_pred CCHHHHHHH----HHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC---CC--
Q ss_conf 843899999----999887397337-99863376469999999997199789993163468999999998678---98--
Q gi|254780991|r 151 GDQPAAIAQ----LLKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFP---HN-- 220 (805)
Q Consensus 151 gdQ~~Ai~~----L~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rfk~~Fp---~n-- 220 (805)
T Consensus 67 atQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G------~-----~~~~Giipr~~~~lF~~i~~~~~~~~ 135 (356)
T cd01365 67 ASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMG------Y-----KEEKGIIPRLCEELFQRIESKKEQNL 135 (356)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECC------C-----CCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 889999999989999999789857999878899983768626------9-----87650999999999999973436781
Q ss_pred EEEEEEECCCCCC
Q ss_conf 3899862134444
Q gi|254780991|r 221 AVEYFVSYYDYYQ 233 (805)
Q Consensus 221 ~V~~f~S~~~~yq 233 (805)
T Consensus 136 ~~~v~~S~~EIYn 148 (356)
T cd01365 136 SYEVEVSYMEIYN 148 (356)
T ss_pred EEEEEEEEEEEEC
T ss_conf 5999999999967