HHsearch alignment for GI: 254780991 and conserved domain: cd01368

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=96.90  E-value=0.0041  Score=41.89  Aligned_cols=83  Identities=23%  Similarity=0.300  Sum_probs=59.1

Q ss_pred             CCEEEEECCCCCCCHHHHHHHH----HHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf             7547751888888438999999----99887397337-998633764699999999971997899931634689999999
Q gi|254780991|r  139 TFFQMQTDYHPSGDQPAAIAQL----LKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF  213 (805)
Q Consensus       139 ~~f~l~~~~~P~gdQ~~Ai~~L----~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf  213 (805)
T Consensus        55 ~~f~FD~vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~-----------~~~~Giipr~~~~l  123 (345)
T cd01368          55 TKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGS-----------PGDGGILPRSLDVI  123 (345)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC-----------CCCCCHHHHHHHHH
T ss_conf             0657785639999989999998788999984887247999547889875242678-----------33332479999999


Q ss_pred             HHHCCCCEEEEEEECCCCCCC
Q ss_conf             986789838998621344442
Q gi|254780991|r  214 KNFFPHNAVEYFVSYYDYYQP  234 (805)
Q Consensus       214 k~~Fp~n~V~~f~S~~~~yqp  234 (805)
T Consensus       124 f~~~~~--~~v~vS~~EIYne  142 (345)
T cd01368         124 FNSIGG--YSVFVSYVEIYNN  142 (345)
T ss_pred             HHHHCC--EEEEEEEEEEECC
T ss_conf             875127--2899999985478