HHsearch alignment for GI: 254780991 and conserved domain: cd01368
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=96.90 E-value=0.0041 Score=41.89 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=59.1
Q ss_pred CCEEEEECCCCCCCHHHHHHHH----HHHHHCCCCEE-EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 7547751888888438999999----99887397337-998633764699999999971997899931634689999999
Q gi|254780991|r 139 TFFQMQTDYHPSGDQPAAIAQL----LKGIHSREKVQ-LLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 139 ~~f~l~~~~~P~gdQ~~Ai~~L----~~~l~~g~~~q-lL~GVTGSGKTevya~lI~~~gr~aLvLvPei~La~QL~~rf 213 (805)
T Consensus 55 ~~f~FD~vf~~~~tQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G~-----------~~~~Giipr~~~~l 123 (345)
T cd01368 55 TKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGS-----------PGDGGILPRSLDVI 123 (345)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC-----------CCCCCHHHHHHHHH
T ss_conf 0657785639999989999998788999984887247999547889875242678-----------33332479999999
Q ss_pred HHHCCCCEEEEEEECCCCCCC
Q ss_conf 986789838998621344442
Q gi|254780991|r 214 KNFFPHNAVEYFVSYYDYYQP 234 (805)
Q Consensus 214 k~~Fp~n~V~~f~S~~~~yqp 234 (805)
T Consensus 124 f~~~~~--~~v~vS~~EIYne 142 (345)
T cd01368 124 FNSIGG--YSVFVSYVEIYNN 142 (345)
T ss_pred HHHHCC--EEEEEEEEEEECC
T ss_conf 875127--2899999985478