HHsearch alignment for GI: 254780991 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.69 E-value=0.042 Score=34.26 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=34.7
Q ss_pred HHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHHHHCCC---------CEEEEECCHHHHHHHHH
Q ss_conf 9999999-88739733799863376469999999997199---------78999316346899999
Q gi|254780991|r 156 AIAQLLK-GIHSREKVQLLLGVTGSGKTFTMAKVIEAMQR---------PAIVMAPNKILAAQLYS 211 (805)
Q Consensus 156 Ai~~L~~-~l~~g~~~qlL~GVTGSGKTevya~lI~~~gr---------~aLvLvPei~La~QL~~ 211 (805)
T Consensus 7 ~lD~~LgGGip~G-~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~ 71 (226)
T cd01393 7 ALDELLGGGIPTG-RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred HHHHHHCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 8998857998888-3999999999989999999999985422116999619999557753199999