HHsearch alignment for GI: 254780991 and conserved domain: pfam00176
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=97.94 E-value=0.00048 Score=48.84 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH------CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 389999999988739733799863376469999999997------19978999316346899999999867898389986
Q gi|254780991|r 153 QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA------MQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226 (805)
Q Consensus 153 Q~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~------~gr~aLvLvPei~La~QL~~rfk~~Fp~n~V~~f~ 226 (805)
T Consensus 2 Q~~gv~wl~~~~~~~-~ggiLaDeMGLGKTiq~ia~l~~~~~~~~~~~~~LIV~P~-sl~~~W~~Ei~~~~~~~~~~~~~ 79 (295)
T pfam00176 2 QLEGVNWLISLYNNG-LGGILADEMGLGKTLQTISLLAYLKELKPLAGPHLVVCPL-STLDNWLNEFEKWAPDLNIVVYY 79 (295)
T ss_pred HHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 788999999987279-9989722787579999999999999838899988999757-88876788999867997079998
Q ss_pred ECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHH-HCCCCEEEECCHHHHCCCCCHHH--HHCCEEEEECCCC
Q ss_conf 2134444210155543210221035889999999999998-54998499827789616898347--7225799941981
Q gi|254780991|r 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSL-LERNDCIVVSSVSCIYGIGSVES--YSQMIVQLKIGDS 302 (805)
Q Consensus 227 S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l-~~~~~~IVVgsrSAIfgl~~P~~--~lglIIvdEehd~ 302 (805)
T Consensus 80 ~~~~---------------------------~r~~~~~~~~~~~~~~ivitsY~~~~~~~~~l~~~~w~~vI~DEaH~i 131 (295)
T pfam00176 80 GDGD---------------------------SRSELLRNVLRTGKFDVLITSYEYIRRDKDELHKANWRYVILDEGHRI 131 (295)
T ss_pred ECHH---------------------------HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 4707---------------------------689998867741688599930999997599984087658998762012