>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.

Probab=99.01 E-value=5.9e-09 Score=85.59 Aligned_cols=147 Identities=22% Similarity=0.190 Sum_probs=93.5 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHH-H---H--CCCCEEEEECCHHHHHHHHHHHHHHCCCCE--EE Q ss_conf 43899999999887397337998633764699999999-9---7--199789993163468999999998678983--89 Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI-E---A--MQRPAIVMAPNKILAAQLYSEFKNFFPHNA--VE 223 (805) Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI-~---~--~gr~aLvLvPei~La~QL~~rfk~~Fp~n~--V~ 223 (805) T Consensus 3 ~Q~~~i~~~~~----g-~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~ 77 (167) T pfam00270 3 IQAEAIPAILE----G-KDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGLKVA 77 (167) T ss_pred HHHHHHHHHHC----C-CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 59999999976----9-978998899975899999999999874778987999906088888999886432102676404 Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCC----CCHHHHHCCEEEEEC Q ss_conf 9862134444210155543210221035889999999999998549984998277896168----983477225799941 Q gi|254780991|r 224 YFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVSCIYGI----GSVESYSQMIVQLKI 299 (805) Q Consensus 224 ~f~S~~~~yqpEay~p~~d~~i~k~~s~n~~i~~~R~~a~~~l~~~~~~IVVgsrSAIfgl----~~P~~~lglIIvdEe 299 (805) T Consensus 78 ~~~g~~~-------------------------~~~~~---~~-~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~ 128 (167) T pfam00270 78 LLYGGDS-------------------------PKEQL---RK-LKKGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEA 128 (167) T ss_pred EECCCCC-------------------------HHHHH---HH-HCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECH T ss_conf 6417861-------------------------78898---76-4057707994789999999803312110038998808 Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCC Q ss_conf 9811178753234311765633877545331872478317888 Q gi|254780991|r 300 GDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSH 342 (805) Q Consensus 300 hd~~~~~~~~~~l~~~~Y~R~D~a~~RG~f~~rg~ILdsatps 342 (805) T Consensus 129 H~~~~~--------~~g~~~~--~il~~l~~~~q~v~~SAT~~ 161 (167) T pfam00270 129 HRLLDQ--------GFGDDLE--EILRRLPPKRQILLLSATLP 161 (167) T ss_pred HHHHCC--------CHHHHHH--HHHHHCCCCCCEEEEECCCC T ss_conf 867335--------8299999--99985799997899972699

HHsearch alignment for GI: 254780991 and conserved domain: pfam00270