HHsearch alignment for GI: 254780991 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=95.78 E-value=0.039 Score=34.56 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----C---CCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 4389999999988739733799863376469999999997----1---9978999316346899999999867898
Q gi|254780991|r 152 DQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEA----M---QRPAIVMAPNKILAAQLYSEFKNFFPHN 220 (805)
Q Consensus 152 dQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI~~----~---gr~aLvLvPei~La~QL~~rfk~~Fp~n 220 (805)
T Consensus 4 ~Q~~av~~-------~~~~llV~AgAGSGKT~~L~~Ri~~li~~~~~~p~~IL~lTFT~kAA~Em~~Ri~~~l~~~ 72 (494)
T pfam00580 4 EQRKAVTH-------LGGPLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAREMKERILKLLGKA 72 (494)
T ss_pred HHHHHHCC-------CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf 89999809-------9999799971870689999999999998189997478767028999999999999873834