HHsearch alignment for GI: 254780991 and conserved domain: smart00489
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.31 E-value=0.0018 Score=44.46 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=60.2
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHH-H---H-----CCCCEEEEECCHHHHHHHHHHH
Q ss_conf 75188888843899999999887397337998633764699999999-9---7-----1997899931634689999999
Q gi|254780991|r 143 MQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVI-E---A-----MQRPAIVMAPNKILAAQLYSEF 213 (805)
Q Consensus 143 l~~~~~P~gdQ~~Ai~~L~~~l~~g~~~qlL~GVTGSGKTevya~lI-~---~-----~gr~aLvLvPei~La~QL~~rf 213 (805)
T Consensus 3 ~~FPy~py~~Q~e~m~~v~~~l~~~-~~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~t~~~~~~~~~el 81 (289)
T smart00489 3 FYFPYEPYPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 2789999989999999999999749-979998999651899999999999996701024561687615378899999999
Q ss_pred HHHC
Q ss_conf 9867
Q gi|254780991|r 214 KNFF 217 (805)
Q Consensus 214 k~~F 217 (805)
T Consensus 82 r~~~ 85 (289)
T smart00489 82 RKLM 85 (289)
T ss_pred HHHC
T ss_conf 8632