>gnl|CDD|161938 TIGR00580, mfd, transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. Length = 926

Score = 45.4 bits (108), Expect = 6e-05 Identities = 71/380 (18%), Positives = 130/380 (34%), Gaps = 70/380 (18%) Query: 312 LVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKI 371 LV+ Y+R D+ G F V G+ ++IFP ++ R+ FG++IE I EF + + + Sbjct: 1 LVELGYERVDLVEEEGEFSVRGEILDIFPP-GSELPVRIEFFGDEIESIREFDVDSQRSL 59 Query: 372 RNVETIKIYANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLE 431 + I I ++ +EE RL + + +E Sbjct: 60 EELLEITILPAKEFILL-----------EEETIARLKDNAARVEDAK-------HLETIE 101 Query: 432 MLETTGSCQSIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDES---HVTIPQISGMYR 488 L E + E +LF+Y+P+++ + +D+ H + Sbjct: 102 ALSEGTLPAGEEMFLPLFF-----EDLSSLFDYLPDNTPILLDDPERFHSAARFLQRELE 156 Query: 489 GDFHRKATLAEYGFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQI 548 +F+ A+ +L + R L P+ + A+ S Q + + Sbjct: 157 -EFYNALEEAK---KLIN--PPRLD-------LDPSELAFEASAISLSRVQLENEHLS-- 201 Query: 549 IRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQGLRIL-----LTVL--TKRMAEDLTEY 601 + I A+ + EI ++ R L +TV ++ AE L Sbjct: 202 ------LKASEAIEGAQKHSRLEFGEILAFKEELFRWLKAGFKITVAAESESQAERLKSL 255 Query: 602 LYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADK 661 L E +I + ++ II V++G L G +P GL I + Sbjct: 256 LAEHDI-------AAQVIDESCIIIP---AVRYVMIGA--LSSGFILPTAGLAVITE--- 300 Query: 662 EGFLRSKTSLIQTIGRAARN 681 S+ R Sbjct: 301 SELFGSRVLRRPKKSRLKSK 320

RPSBLAST alignment for GI: 254780991 and conserved domain: TIGR00580