RPSBLAST alignment for GI: 254780991 and conserved domain: TIGR00631
>gnl|CDD|161969 TIGR00631, uvrb, excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 655
Score = 1007 bits (2607), Expect = 0.0
Identities = 395/655 (60%), Positives = 499/655 (76%), Gaps = 2/655 (0%)
Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
F++ + + P+GDQP AIA+L++G+ EK Q LLGVTGSGKTFTMA VI + RP +V+A
Sbjct: 2 FKLHSPFQPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQVNRPTLVIA 61
Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
NK LAAQLY+EFK FFP NAVEYFVSYYDYYQPEAYVP DTYIEK++SIN++I+R+RH
Sbjct: 62 HNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRH 121
Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
SATRSLLER D IVV+SVSCIYG+GS E Y +M++ L++G ++++ELL LV+ QY+R
Sbjct: 122 SATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVELQYERN 181
Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
D+ RGTFRV GD +EIFP++ ++ A R+ FG++IE IS PLTG+ +R +++ I+
Sbjct: 182 DVDFQRGTFRVRGDVVEIFPAYEDEFAVRIEFFGDEIERISRVDPLTGEVLRELDSFTIF 241
Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
SHYVTP L A+K I++EL+ RL E++G+LLEAQRL+QR YDLEML G C
Sbjct: 242 PASHYVTPEERLERAIKNIEKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCS 301
Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
IENYSR+L+GR PGEPP TL +Y P+D LL +DESHVT+PQI GMY GD RK TL EY
Sbjct: 302 GIENYSRHLSGRAPGEPPYTLLDYFPDDFLLVIDESHVTLPQIGGMYNGDRSRKQTLVEY 361
Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
GFRLPS +DNRPL+FEE+ + VSATPG +ELEQ +VEQIIRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPLKFEEFEERINQVVYVSATPGPYELEQSGN-VVEQIIRPTGLLDPEIE 420
Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
+R QV+D+ EI + R+L+T LTK+MAEDLT+YL E I+VRY+HSE+ TLE
Sbjct: 421 VRPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLE 480
Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
R+EIIRDLRLG+FDVLVGINLLREGLD+PE LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 481 RVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 540
Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
NVN KVI+YAD IT S+Q AI+ET RRR+ Q+ +N++H I PQ++++ I +++D L E
Sbjct: 541 NVNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDILDIELKEK 600
Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
+ LS LSKK+ K +K L K+M AA NL FEEAAR+RDEI LK
Sbjct: 601 EDAAKKKKKGEDLSDLSKKELKKLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655