RPSBLAST alignment for GI: 254780991 and conserved domain: TIGR00631

>gnl|CDD|161969 TIGR00631, uvrb, excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 655
 Score = 1007 bits (2607), Expect = 0.0
 Identities = 395/655 (60%), Positives = 499/655 (76%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA+L++G+   EK Q LLGVTGSGKTFTMA VI  + RP +V+A
Sbjct: 2   FKLHSPFQPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQVNRPTLVIA 61

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLY+EFK FFP NAVEYFVSYYDYYQPEAYVP  DTYIEK++SIN++I+R+RH
Sbjct: 62  HNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRH 121

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IVV+SVSCIYG+GS E Y +M++ L++G  ++++ELL  LV+ QY+R 
Sbjct: 122 SATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVELQYERN 181

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP++ ++ A R+  FG++IE IS   PLTG+ +R +++  I+
Sbjct: 182 DVDFQRGTFRVRGDVVEIFPAYEDEFAVRIEFFGDEIERISRVDPLTGEVLRELDSFTIF 241

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTP   L  A+K I++EL+ RL   E++G+LLEAQRL+QR  YDLEML   G C 
Sbjct: 242 PASHYVTPEERLERAIKNIEKELEERLKYFEEQGKLLEAQRLKQRTEYDLEMLREMGYCS 301

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+L+GR PGEPP TL +Y P+D LL +DESHVT+PQI GMY GD  RK TL EY
Sbjct: 302 GIENYSRHLSGRAPGEPPYTLLDYFPDDFLLVIDESHVTLPQIGGMYNGDRSRKQTLVEY 361

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+       + VSATPG +ELEQ    +VEQIIRPTGL+DP +E
Sbjct: 362 GFRLPSALDNRPLKFEEFEERINQVVYVSATPGPYELEQSGN-VVEQIIRPTGLLDPEIE 420

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R    QV+D+  EI     +  R+L+T LTK+MAEDLT+YL E  I+VRY+HSE+ TLE
Sbjct: 421 VRPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLE 480

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 481 RVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 540

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN KVI+YAD IT S+Q AI+ET RRR+ Q+ +N++H I PQ++++ I +++D  L E 
Sbjct: 541 NVNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDILDIELKEK 600

Query: 741 AATTNISIDAQQLS-LSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLK 794
                     + LS LSKK+ K  +K L K+M  AA NL FEEAAR+RDEI  LK
Sbjct: 601 EDAAKKKKKGEDLSDLSKKELKKLIKQLEKEMKQAARNLEFEEAARLRDEILELK 655