RPSBLAST alignment for GI: 254780991 and conserved domain: COG0556

>gnl|CDD|30902 COG0556, UvrB, Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]. Length = 663
 Score = 1022 bits (2645), Expect = 0.0
 Identities = 419/655 (63%), Positives = 507/655 (77%), Gaps = 2/655 (0%)

Query: 141 FQMQTDYHPSGDQPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMA 200
           F++ + + P+GDQP AIA+L++GI +  K Q LLGVTGSGKTFTMA VI  +QRP +V+A
Sbjct: 5   FKLHSPFKPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQRPTLVLA 64

Query: 201 PNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRH 260
            NK LAAQLYSEFK FFP NAVEYFVSYYDYYQPEAYVP TDTYIEK++SIN++IDR+RH
Sbjct: 65  HNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSTDTYIEKDASINDEIDRLRH 124

Query: 261 SATRSLLERNDCIVVSSVSCIYGIGSVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQ 320
           SATRSLLER D IVV+SVSCIYG+GS E Y +M++ L++G  ++++ELL  LV  QY+R 
Sbjct: 125 SATRSLLERRDVIVVASVSCIYGLGSPEEYLKMMLSLEVGQEIDRRELLRKLVDLQYERN 184

Query: 321 DIGIIRGTFRVCGDSIEIFPSHLEDVAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIY 380
           D+   RGTFRV GD +EIFP++ +D A R+  FG++IE ISEF PLTGQ I  ++   IY
Sbjct: 185 DVDFQRGTFRVRGDVVEIFPAYYDDEAIRIEFFGDEIERISEFDPLTGQVIGELDRFTIY 244

Query: 381 ANSHYVTPRPTLNTAMKYIKEELKMRLIELEKEGRLLEAQRLEQRITYDLEMLETTGSCQ 440
             SHYVTPR  L  A++ IKEEL+ RL   EK  +LLEAQRLEQR  YDLEML  TG C 
Sbjct: 245 PASHYVTPRERLEQAIESIKEELEERLKFFEKNNKLLEAQRLEQRTEYDLEMLRETGYCS 304

Query: 441 SIENYSRYLTGRNPGEPPPTLFEYIPEDSLLFVDESHVTIPQISGMYRGDFHRKATLAEY 500
            IENYSR+LTGR PGEPP TLF+Y P+D LLF+DESHVT+PQI GMY GD  RK TL EY
Sbjct: 305 GIENYSRHLTGRKPGEPPYTLFDYFPDDFLLFIDESHVTVPQIGGMYNGDRSRKQTLVEY 364

Query: 501 GFRLPSCMDNRPLRFEEWNCLRPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVE 560
           GFRLPS +DNRPL+FEE+    P TI VSATPG +ELEQ  G +VEQIIRPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPLKFEEFEAKIPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPEIE 424

Query: 561 IRSARTQVEDVYDEINLAAQQGLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLE 620
           +R  + QV+D+  EI     +  R+L+T LTK+MAEDLTEYL E  I+VRY+HS++ TLE
Sbjct: 425 VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLE 484

Query: 621 RIEIIRDLRLGKFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAAR 680
           R+EIIRDLRLG+FDVLVGINLLREGLD+PE  LVAILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 681 NVNSKVILYADTITKSIQLAIDETTRRREKQLEHNKKHNINPQSVKEKIMEVIDPILLED 740
           NVN KVILYAD IT S+Q AIDET RRRE Q+ +N++H I PQ++K+KI +++D    ED
Sbjct: 545 NVNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEED 604

Query: 741 AATTNISIDAQQLSLSKKKGKAHLKSLRKQMHLAADNLNFEEAARIRDEIKRLKS 795
                I   A    +SKK+ +  +K L K+M  AA NL FEEAAR+RDEIK LK 
Sbjct: 605 EYKAKIEKKAS--KMSKKELEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKE 657