RPSBLAST alignment for GI: 254780991 and conserved domain: COG1197
>gnl|CDD|31390 COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]. Length = 1139
Score = 91.5 bits (227), Expect = 9e-19
Identities = 100/523 (19%), Positives = 191/523 (36%), Gaps = 68/523 (13%)
Query: 167 REKVQLLLGVTGSGKTFTMAKVIEAMQRPAIVMAPNKILAAQLYSEFKNFFPHNAVEYFV 226
LL G++G K +A + E P +++ + A +L + + FFP V
Sbjct: 8 GGDPLLLGGLSGGAKALLIAALAEEKPNPVLLVTADLQEADRLAEDLR-FFPDQPVLLL- 65
Query: 227 SYYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERNDCIVVSSVS-CIYGIG 285
P +T S ++ I R A R L + IVV V+ + +
Sbjct: 66 ------------PDWETLPYDRFSPSQDIVSSRLEALRRLAQGKKGIVVVPVNALLQKLP 113
Query: 286 SVESYSQMIVQLKIGDSVEQKELLSSLVKQQYKRQDIGIIRGTFRVCGDSIEIFPSHLED 345
+ + + LK+G+ ++ +L + LV+ Y+R D+ + G F V G ++IFP +
Sbjct: 114 PPDFLEENSLTLKVGEELDLDDLEARLVRAGYERVDMVMEPGEFAVRGGILDIFPPG-SE 172
Query: 346 VAWRVSMFGNDIEEISEFYPLTGQKIRNVETIKIYANSHYVTPRPTLNTAMKYIKEELKM 405
+R+ FG++IE I F P T + + VE I++
Sbjct: 173 EPYRIEFFGDEIESIRSFDPETQRSLEEVEEIELLP-----------------------A 209
Query: 406 RLIELEKEGRLLEAQRLEQR--ITYDLEMLETTGSCQSIENYSRYLTGRNPGEPPPTLFE 463
L++E ++ + D + E S + +L E TLF+
Sbjct: 210 SEFILDEEAIEAFRKQYLETFEPKRDDALYEALSSGRRFAGLEYFLP--LFYEDLATLFD 267
Query: 464 YIPEDSLLFVDE-SHVTIPQISGMYRGDFHRKATLAEYGFRLPSCMDNRPLRFEEW-NCL 521
Y+P+++L+ VDE + DF+ LP + L EE L
Sbjct: 268 YLPKNTLIVVDERVLEAAEEFEKEVA-DFYEARLSDGEYPPLPP--EALYLSAEELFELL 324
Query: 522 RPTTIVVSATPGSWELEQCQGIIVEQIIRPTGLVDPPVEIRSARTQVEDVYDEINLAAQQ 581
+P + EL + I ++ + + + R ++E +
Sbjct: 325 KPVPRISLFPEHLPELSAEEIINLDPLPDLAFFGQHKEPLDALRKEIERF--------RG 376
Query: 582 GLRILLTVLTKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINL 641
G ++++ ++ E L E L E +I + + K +V + +
Sbjct: 377 GYKVIILAESEGRRERLLELLAEHDIPPQKVDRL------------DEAKKGEVYIAVGP 424
Query: 642 LREGLDIPECGLVAILDADKEGFLRSKTSLIQTIGRAARNVNS 684
L G +P+ L I +++ G + + + A +
Sbjct: 425 LESGFILPDEKLAVITESELLGSRVKRRRRRKRRKKNATRIKD 467