RPSBLAST alignment for GI: 254780991 and conserved domain: COG4096

>gnl|CDD|33853 COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]. Length = 875

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 19/147 (12%)

Query: 142 QMQTDYHPSGD--------QPAAIAQLLKGIHSREKVQLLLGVTGSGKTFTMAKVIEAMQ 193
           ++Q   +   D        Q  AI ++++     +   LL+  TG+GKT T   +I+ + 
Sbjct: 151 RIQQLAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLI 210

Query: 194 RPAIV-----MAPNKILAAQLYSEFKNFFPHNAVEYFVSYYDYYQPEAYVPRTDTYIEKE 248
           +   V     +A    L  Q Y  F++F P       +   D     +      TY    
Sbjct: 211 KSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIE--DKKGDTSSEIYLSTYQTMT 268

Query: 249 SSINEQIDRMRHSATRSLLERNDCIVV 275
             I ++ D  R    R      D IV+
Sbjct: 269 GRIEQKEDEYR----RFGPGFFDLIVI 291