HHsearch alignment for GI: 254780992 and conserved domain: TIGR00369
>TIGR00369 unchar_dom_1 uncharacterized domain 1; InterPro: IPR003736 This domain is found in the PAAI protein from Escherichia coli that may be involved in phenylacetic acid degradation and in a few others that may be transcription regulators . Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus..
Probab=98.49 E-value=2.3e-06 Score=56.90 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=80.8
Q ss_pred CCCCCCCE-EEEEEECHHHCCC--CCCEEHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEEEEECCCCCCCEEEEEEE
Q ss_conf 05899834-8999848334274--78430899999999999999999738--9832557520343214675738999999
Q gi|254780992|r 26 QMHSSGVL-TLKIQTMPTDVNL--DGNVFGGWIMSQIDIACGIRASQLCK--CRVVTKAVTELLFEKPIQVSDLVHIYTQ 100 (152)
Q Consensus 26 ~~~~~~~~-~l~~~~~P~~~N~--~G~lfGG~ll~~~D~aa~~~A~~~~~--~~~vt~~id~i~F~~Pv~~Gd~l~~~a~ 100 (152)
T Consensus 11 ~~~~~~~~g~~~~p~~~~~~~~~p~g~~hGG~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~rp~~~g~~~~a~~~ 90 (122)
T TIGR00369 11 EELGDGELGEAEMPVDERTLQPGPFGSLHGGVSAALADTAGGSAAGYLCLPGGAAVVGLELNVNYLRPAREGGKLRAIAE 90 (122)
T ss_pred EECCCCEEEEEEEEEEHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEEECCCCCCCCCEEEEEEE
T ss_conf 20587601168875202103788641001006656677653355432035110101100000000222246971688778
Q ss_pred EEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEE
Q ss_conf 9962165079999999953778886089999999999
Q gi|254780992|r 101 IRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVM 137 (152)
Q Consensus 101 V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTf 137 (152)
T Consensus 91 ~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~ 120 (122)
T TIGR00369 91 PVHLGRQTGVAEIEIVDE-------QGRLCALSRGTL 120 (122)
T ss_pred EEEECCCEEEEEEEEECC-------CCCEEEEECEEE
T ss_conf 863066102688898876-------674786411022