HHsearch alignment for GI: 254780992 and conserved domain: TIGR01750
>TIGR01750 fabZ beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; InterPro: IPR010084 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes . FabZ is the primary dehydratase involved in fatty-acid elongation in type II FAS. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. ; GO: 0016836 hydro-lyase activity, 0006633 fatty acid biosynthetic process, 0005737 cytoplasm.
Probab=97.62 E-value=0.001 Score=41.44 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCC------CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC
Q ss_conf 899999999999999999738------98325575203432146757389999999962165079999999953778886
Q gi|254780992|r 52 GGWIMSQIDIACGIRASQLCK------CRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSD 125 (152)
Q Consensus 52 GG~ll~~~D~aa~~~A~~~~~------~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~ 125 (152)
T Consensus 57 GVLI~EAlAQaaGvl~~~~L~~~~~~g~~~~F~gid~akFr~pV~PGDqL~l~~e~~~~~~~i~k~~~~A~VD------G 130 (142)
T TIGR01750 57 GVLIVEALAQAAGVLAILSLGGKKGKGKLVYFAGIDKAKFRKPVVPGDQLILEVEFLKKRRKIGKFKGEAEVD------G 130 (142)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC------C
T ss_conf 0787888898888774205798778862899988627303566467822478788553412401578899889------9
Q ss_pred EEEEEEEEEEEEE
Q ss_conf 0899999999999
Q gi|254780992|r 126 VLQKTCEATVVMV 138 (152)
Q Consensus 126 ~~~~v~~a~fTfV 138 (152)
T Consensus 131 --~vaAeaei~~a 141 (142)
T TIGR01750 131 --KVAAEAEITFA 141 (142)
T ss_pred --EEEEEEEEEEE
T ss_conf --89977888861