HHsearch alignment for GI: 254780992 and conserved domain: cd00556

>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=96.41  E-value=0.042  Score=31.95  Aligned_cols=84  Identities=15%  Similarity=0.183  Sum_probs=62.6

Q ss_pred             CCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCE
Q ss_conf             78430899999999999999999738983255752034321467573899999999621650799999999537788860
Q gi|254780992|r   47 DGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDV  126 (152)
Q Consensus        47 ~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~  126 (152)
T Consensus        14 ~~~~~~~~la~~sd~~~~~~~~~~~~~~~~~sld~~~~F~~~~~~~~w~~~~v~~~~~g~~~~~~~~~~~q~-----~G-   87 (99)
T cd00556          14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQR-----DG-   87 (99)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEEECC-----CC-
T ss_conf             889999999999999998754332677877860145786589999988999998140207951899999948-----99-


Q ss_pred             EEEEEEEEEEE
Q ss_conf             89999999999
Q gi|254780992|r  127 LQKTCEATVVM  137 (152)
Q Consensus       127 ~~~v~~a~fTf  137 (152)
T Consensus        88 -~lvas~~q~~   97 (99)
T cd00556          88 -KLVASATQSF   97 (99)
T ss_pred             -CEEEEEEEEE
T ss_conf             -7999998135