HHsearch alignment for GI: 254780992 and conserved domain: cd03445
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=96.75 E-value=0.041 Score=31.97 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=53.0
Q ss_pred CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEE
Q ss_conf 47843089999999999999999973898325575203432146757389999999962165079999999
Q gi|254780992|r 46 LDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVW 116 (152)
Q Consensus 46 ~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~ 116 (152)
T Consensus 14 ~~r~~fGG~~~Aqa~~AA~~t----v~~~~~~~S~h-~~F~~~g~~~~pi~~~V~~lr~Grs~~tr~V~a~ 79 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAART----VPDDRVPHSLH-SYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAV 79 (94)
T ss_pred CCCCCHHHHHHHHHHHHHHHH----CCCCCCCEEEE-EEEECCCCCCCCEEEEEEEEECCCCEEEEEEEEE
T ss_conf 765244279999999999953----89987635899-9980488899999999999867986798999999