Query gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 152 No_of_seqs 124 out of 1066 Neff 6.6 Searched_HMMs 39220 Date Mon May 30 02:43:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780992.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK10694 acyl-CoA thioester hy 100.0 1.5E-43 0 274.8 17.3 128 25-152 4-132 (133) 2 COG1607 Acyl-CoA hydrolase [Li 100.0 3E-42 0 267.1 16.3 126 25-152 6-131 (157) 3 cd03442 BFIT_BACH Brown fat-in 100.0 1.2E-35 3.1E-40 228.4 17.3 121 28-150 3-123 (123) 4 KOG2763 consensus 99.9 7.9E-23 2E-27 153.3 11.5 123 26-149 193-315 (357) 5 KOG2763 consensus 99.8 5.3E-19 1.4E-23 130.9 9.8 116 33-151 10-136 (357) 6 COG2050 PaaI HGG motif-contain 99.5 3.2E-12 8.1E-17 91.2 15.7 107 28-142 31-139 (141) 7 pfam03061 4HBT Thioesterase su 99.4 2.9E-12 7.3E-17 91.5 10.9 73 47-119 1-74 (79) 8 cd03443 PaaI_thioesterase PaaI 99.4 1.1E-11 2.8E-16 88.0 13.7 102 28-138 9-112 (113) 9 PRK11688 hypothetical protein; 99.2 2E-09 5.1E-14 74.8 13.8 101 29-138 35-152 (154) 10 PRK10254 hypothetical protein; 99.1 1.4E-09 3.5E-14 75.8 12.3 125 6-140 10-136 (137) 11 KOG3328 consensus 99.1 4.7E-10 1.2E-14 78.5 9.4 89 30-119 36-125 (148) 12 TIGR02286 PaaD phenylacetic ac 99.1 3.1E-10 7.9E-15 79.6 7.8 87 28-116 11-97 (115) 13 PRK10800 acyl-CoA thioester hy 99.1 5.8E-09 1.5E-13 72.1 13.9 109 36-152 6-124 (130) 14 COG0824 FcbC Predicted thioest 99.1 1.3E-08 3.4E-13 70.0 15.4 112 32-152 5-126 (137) 15 PRK10293 hypothetical protein; 98.9 2.7E-08 7E-13 68.2 11.3 101 29-138 32-134 (136) 16 cd03440 hot_dog The hotdog fol 98.6 4.1E-06 1E-10 55.4 13.5 95 35-137 3-99 (100) 17 cd00586 4HBT 4-hydroxybenzoyl- 98.5 1.1E-05 2.7E-10 53.0 15.1 100 34-141 2-110 (110) 18 TIGR00369 unchar_dom_1 unchara 98.5 2.3E-06 5.9E-11 56.9 10.6 105 26-137 11-120 (122) 19 PRK04424 fatty acid biosynthes 98.4 3.8E-05 9.8E-10 49.7 14.7 107 25-143 78-185 (185) 20 TIGR02799 thio_ybgC tol-pal sy 98.1 5E-05 1.3E-09 49.0 9.9 88 58-152 34-123 (127) 21 PRK00006 fabZ (3R)-hydroxymyri 98.0 0.00033 8.4E-09 44.3 12.9 118 16-142 17-149 (149) 22 COG4109 Predicted transcriptio 97.8 0.00045 1.1E-08 43.5 10.1 83 36-119 336-418 (432) 23 TIGR01750 fabZ beta-hydroxyacy 97.6 0.001 2.6E-08 41.4 10.2 79 52-138 57-141 (142) 24 cd01288 FabZ FabZ is a 17kD be 97.6 0.0024 6.1E-08 39.2 11.8 82 50-139 44-130 (131) 25 TIGR00051 TIGR00051 conserved 97.5 0.0007 1.8E-08 42.3 7.6 104 40-150 5-121 (121) 26 KOG4781 consensus 97.4 0.0012 3.1E-08 40.9 8.1 88 31-119 125-213 (237) 27 PRK13188 bifunctional UDP-3-O- 97.1 0.012 3.1E-07 35.1 11.0 121 15-143 330-464 (465) 28 cd03455 SAV4209 SAV4209 is a S 97.1 0.023 5.7E-07 33.5 11.7 68 49-122 45-112 (123) 29 cd00493 FabA_FabZ FabA/Z, beta 97.0 0.026 6.7E-07 33.1 13.5 102 29-138 17-130 (131) 30 cd03445 Thioesterase_II_repeat 96.8 0.041 1.1E-06 32.0 11.0 66 46-116 14-79 (94) 31 TIGR02447 yiiD_Cterm thioester 96.7 0.042 1.1E-06 32.0 10.8 101 30-140 21-140 (141) 32 cd03451 FkbR2 FkbR2 is a Strep 96.7 0.015 3.7E-07 34.6 8.2 42 75-116 78-126 (146) 33 cd03449 R_hydratase (R)-hydrat 96.6 0.049 1.3E-06 31.5 10.6 52 81-137 75-126 (128) 34 cd00556 Thioesterase_II Thioes 96.4 0.042 1.1E-06 32.0 9.1 84 47-137 14-97 (99) 35 pfam01575 MaoC_dehydratas MaoC 96.3 0.049 1.3E-06 31.5 9.0 64 49-115 52-115 (123) 36 cd03446 MaoC_like MoaC_like 96.2 0.059 1.5E-06 31.1 8.7 54 49-106 52-108 (140) 37 cd03452 MaoC_C MaoC_C The C-t 95.9 0.061 1.6E-06 31.0 8.0 68 48-116 45-122 (142) 38 cd03447 FAS_MaoC FAS_MaoC, the 95.9 0.13 3.2E-06 29.1 11.7 65 49-116 44-108 (126) 39 COG0764 FabA 3-hydroxymyristoy 95.9 0.13 3.4E-06 29.0 12.1 119 16-142 14-146 (147) 40 PRK10526 acyl-CoA thioesterase 95.8 0.14 3.6E-06 28.9 10.4 65 47-116 31-95 (286) 41 cd03453 SAV4209_like SAV4209_l 95.8 0.14 3.6E-06 28.9 11.3 65 49-120 46-114 (127) 42 pfam01643 Acyl-ACP_TE Acyl-ACP 95.7 0.15 3.8E-06 28.7 13.7 109 37-152 8-126 (247) 43 COG5496 Predicted thioesterase 95.2 0.24 6E-06 27.5 11.9 86 49-142 30-116 (130) 44 cd03441 R_hydratase_like (R)-h 95.1 0.24 6.1E-06 27.5 9.5 65 49-116 44-112 (127) 45 cd03454 YdeM YdeM is a Bacillu 95.0 0.23 5.9E-06 27.6 8.3 31 75-105 75-105 (140) 46 COG2030 MaoC Acyl dehydratase 94.8 0.2 5.1E-06 27.9 7.6 56 50-105 64-123 (159) 47 PRK08190 bifunctional enoyl-Co 94.3 0.41 1E-05 26.2 9.6 87 49-143 54-145 (465) 48 KOG3016 consensus 94.1 0.43 1.1E-05 26.0 8.3 90 36-138 25-115 (294) 49 PRK07531 bifunctional 3-hydrox 93.8 0.41 1.1E-05 26.1 7.5 112 32-151 339-459 (489) 50 COG1946 TesB Acyl-CoA thioeste 93.7 0.4 1E-05 26.2 7.2 88 39-139 22-110 (289) 51 PRK13691 (3R)-hydroxyacyl-ACP 92.5 0.79 2E-05 24.5 8.9 61 81-148 89-154 (166) 52 cd03450 NodN NodN (nodulation 92.2 0.86 2.2E-05 24.2 9.4 69 50-119 59-131 (149) 53 PRK11563 bifunctional aldehyde 90.1 1.4 3.6E-05 23.0 6.6 64 75-139 609-675 (676) 54 PRK13692 (3R)-hydroxyacyl-ACP 89.9 1.5 3.7E-05 22.9 8.7 60 80-146 88-152 (159) 55 cd03448 HDE_HSD HDE_HSD The R 86.4 2.5 6.3E-05 21.6 6.7 44 69-115 63-106 (122) 56 PRK13693 (3R)-hydroxyacyl-ACP 85.4 2.8 7.1E-05 21.3 7.6 49 69-118 72-125 (142) 57 pfam07977 FabA FabA-like domai 81.9 3.9 9.9E-05 20.4 9.2 67 51-117 50-124 (133) 58 TIGR02278 PaaN-DH phenylacetic 57.9 14 0.00036 17.1 5.2 50 50-104 598-649 (690) 59 TIGR02416 CO_dehy_Mo_lg carbon 53.0 11 0.00029 17.7 2.4 34 3-40 465-498 (775) 60 PRK11281 potassium efflux prot 47.2 14 0.00036 17.1 2.2 34 82-119 931-964 (1107) 61 pfam00167 FGF Fibroblast growt 46.5 14 0.00036 17.1 2.1 16 136-151 97-112 (123) 62 smart00442 FGF Acidic and basi 43.4 17 0.00044 16.6 2.1 16 136-151 98-113 (126) 63 pfam09458 H_lectin H-type lect 43.1 25 0.00063 15.7 9.5 60 70-142 13-72 (72) 64 PHA00430 tail fiber protein 39.7 9.8 0.00025 18.1 0.4 27 36-62 442-468 (568) 65 pfam07100 ASRT Anabaena sensor 37.5 30 0.00077 15.2 6.5 52 101-152 33-84 (120) 66 PRK10929 hypothetical protein; 37.4 13 0.00033 17.4 0.7 34 82-119 929-962 (1109) 67 COG1435 Tdk Thymidine kinase [ 37.3 30 0.00077 15.2 4.8 71 34-105 110-183 (201) 68 cd00058 FGF Acidic and basic f 34.4 25 0.00065 15.6 1.8 17 135-151 93-109 (123) 69 COG3884 FatA Acyl-ACP thioeste 29.9 40 0.001 14.5 7.2 63 81-151 61-124 (250) 70 pfam06256 Nucleo_LEF-12 Nucleo 28.1 16 0.00041 16.8 -0.1 31 60-91 45-75 (179) 71 COG3264 Small-conductance mech 23.9 52 0.0013 13.8 4.1 19 81-99 653-671 (835) 72 PTZ00085 40S ribosomal protein 23.3 43 0.0011 14.3 1.4 13 85-97 44-56 (67) 73 pfam01200 Ribosomal_S28e Ribos 23.3 45 0.0011 14.2 1.5 14 84-97 43-56 (67) 74 cd04457 S1_S28E S1_S28E: S28E, 22.6 47 0.0012 14.1 1.5 15 84-98 36-50 (60) 75 PRK04007 rps28e 30S ribosomal 22.1 49 0.0012 14.0 1.5 13 85-97 45-57 (70) 76 pfam10472 CReP_N eIF2-alpha ph 21.1 23 0.00059 15.9 -0.4 30 45-74 82-112 (411) 77 COG2053 RPS28A Ribosomal prote 20.9 50 0.0013 13.9 1.3 11 86-96 45-55 (69) No 1 >PRK10694 acyl-CoA thioester hydrolase; Provisional Probab=100.00 E-value=1.5e-43 Score=274.79 Aligned_cols=128 Identities=37% Similarity=0.607 Sum_probs=120.3 Q ss_pred ECCCCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEE Q ss_conf 30589983489998483342747843089999999999999999973898325575203432146757389999999962 Q gi|254780992|r 25 CQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKI 104 (152) Q Consensus 25 ~~~~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~ 104 (152) ++..|+|+++++.++||+|+|++|++|||+||+|||++|+++|+|||++++||+++|+++|++|+++||+|+++|+|+++ T Consensus 4 ~~~~~~~~l~l~~lv~P~d~N~~G~lfGG~lm~~mD~aa~i~A~r~~~~~~VTasvd~v~F~~Pv~vGdiv~~~a~V~~~ 83 (133) T PRK10694 4 THNVPQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKK 83 (133) T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEECCCCCCCCEEEEEEEEEEE T ss_conf 88699972599986173236868867499999999999999999973996699997618986763079899999999998 Q ss_pred CCCEEEEEEEEEEECCCCC-CCEEEEEEEEEEEEEEECCCCCCCCCCCC Q ss_conf 1650799999999537788-86089999999999998789880227999 Q gi|254780992|r 105 GKTSVTIYCDVWTCPRNAS-SDVLQKTCEATVVMVAVDEKGNPKSIRTE 152 (152) Q Consensus 105 G~tSm~V~V~V~~~~~~~~-~~~~~~v~~a~fTfVavDe~g~P~pip~e 152 (152) |+|||+|+++||+++.... .++++++++|+|||||+|++|+|+|||+| T Consensus 84 G~tSm~V~v~v~~~~~~~~~~g~~~~~~~a~ftfValDe~g~P~pvP~~ 132 (133) T PRK10694 84 GTTSISINIEVWVKKVASEPIGQRYKATEALFKYVAVDPEGKPRALPVE 132 (133) T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCEECCCCC T ss_conf 1663189999999864677777089999999999999999697579999 No 2 >COG1607 Acyl-CoA hydrolase [Lipid metabolism] Probab=100.00 E-value=3e-42 Score=267.07 Aligned_cols=126 Identities=35% Similarity=0.623 Sum_probs=119.1 Q ss_pred ECCCCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEE Q ss_conf 30589983489998483342747843089999999999999999973898325575203432146757389999999962 Q gi|254780992|r 25 CQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKI 104 (152) Q Consensus 25 ~~~~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~ 104 (152) ....|+++++++.++||+|+|++|++|||++|+|||++|+++|.++|++++||+++|.+.|++|+++||+|+++|+|+|+ T Consensus 6 ~~~~~~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~ 85 (157) T COG1607 6 TKELPEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYT 85 (157) T ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEEECCCCCCCCEEEEEEEEEEC T ss_conf 67799862789999667766855664147999999999999999984990799995308872623049689999999544 Q ss_pred CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCC Q ss_conf 165079999999953778886089999999999998789880227999 Q gi|254780992|r 105 GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIRTE 152 (152) Q Consensus 105 G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~g~P~pip~e 152 (152) |||||+|.|+||+++...+. .+++++|+|||||+|++|+|+|||++ T Consensus 86 GrTSm~V~Vev~~~~~~~~~--~~~~t~~~ft~VAvd~~gkP~~vp~~ 131 (157) T COG1607 86 GRTSMEVGVEVWAEDIRSGE--RRLATSAYFTFVAVDEDGKPTPVPRE 131 (157) T ss_pred CCCCEEEEEEEEEECCCCCC--CEEEEEEEEEEEEECCCCCCCCCCCC T ss_conf 76428999999983266775--03744599999988899996468864 No 3 >cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy. Probab=100.00 E-value=1.2e-35 Score=228.37 Aligned_cols=121 Identities=29% Similarity=0.475 Sum_probs=114.3 Q ss_pred CCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC Q ss_conf 89983489998483342747843089999999999999999973898325575203432146757389999999962165 Q gi|254780992|r 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT 107 (152) Q Consensus 28 ~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t 107 (152) ..+..+.++.+++|+|+|.+|++|||+||+|||++|+++|++|++++++|+++|+++|++|+++||+|+++|+|+|+|++ T Consensus 3 ~~~~~~~~~~~~~P~~~N~~g~l~GG~ll~~~d~~a~~~a~~~~~~~~vt~~vd~i~F~~pv~~Gd~v~~~~~v~~~g~s 82 (123) T cd03442 3 MEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGRT 82 (123) T ss_pred CCCCEEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCEEEEEEEEEEECCE T ss_conf 66568999999882005868748689999999999999999970994699998868991235479799999999971561 Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCCCCCC Q ss_conf 0799999999537788860899999999999987898802279 Q gi|254780992|r 108 SVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIR 150 (152) Q Consensus 108 Sm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~g~P~pip 150 (152) ||+|+++|+++....+ +.+++++++||||++|++|||+||| T Consensus 83 Smev~v~v~~~~~~~~--~~~~~~~~~ftfVa~d~~grp~~ip 123 (123) T cd03442 83 SMEVGVEVEAEDPLTG--ERRLVTSAYFTFVALDEDGKPRPVP 123 (123) T ss_pred EEEEEEEEEEEECCCC--CEEEEEEEEEEEEEECCCCCCCCCC T ss_conf 7999999999928999--6999999999999999994971799 No 4 >KOG2763 consensus Probab=99.89 E-value=7.9e-23 Score=153.33 Aligned_cols=123 Identities=18% Similarity=0.291 Sum_probs=100.2 Q ss_pred CCCCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEC Q ss_conf 05899834899984833427478430899999999999999999738983255752034321467573899999999621 Q gi|254780992|r 26 QMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIG 105 (152) Q Consensus 26 ~~~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G 105 (152) .+..++.+.+-.+|+|+|.|.||++|||+||+|++|.|+++|++||++++.+.+||.|+|.+|+.+|++|.+.|.|+|+- T Consensus 193 ~~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~~~p~~rsVD~i~F~~pVdvG~~L~f~s~V~yT~ 272 (357) T KOG2763 193 VWMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKGRPATRSVDDIEFQKPVDVGCVLTFSSFVTYTD 272 (357) T ss_pred EEEECCCEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCEEEEEEEEEEEEEEEC T ss_conf 67404631378750676567667553689999999999999999738996378740433268613520999730788716 Q ss_pred CCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCCCCC Q ss_conf 65079999999953778886089999999999998789880227 Q gi|254780992|r 106 KTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSI 149 (152) Q Consensus 106 ~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~g~P~pi 149 (152) ..+..+.+++.++..+......+ ++..++.+..-++.+.-.+. T Consensus 273 ~k~~~vqv~~~~~v~s~~~r~~~-i~~~F~~t~~~~~~~~~~~~ 315 (357) T KOG2763 273 NKSIYVQVKAVASVDSSQGRSRE-ITNAFHFTFSEERVGNLLPV 315 (357) T ss_pred CCCEEEEEEEECCCCCCCCCCCE-ECCCEEEECHHHHCCCCCCC T ss_conf 88625898873220564224300-00322352115414455677 No 5 >KOG2763 consensus Probab=99.79 E-value=5.3e-19 Score=130.92 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=97.6 Q ss_pred EEEEEEECHHHCCCCCCEEHH-HHHHHHHHHHHHHHHHHCCC---------CCEEEEEEEEEEECCCCCC-CEEEEEEEE Q ss_conf 489998483342747843089-99999999999999997389---------8325575203432146757-389999999 Q gi|254780992|r 33 LTLKIQTMPTDVNLDGNVFGG-WIMSQIDIACGIRASQLCKC---------RVVTKAVTELLFEKPIQVS-DLVHIYTQI 101 (152) Q Consensus 33 ~~l~~~~~P~~~N~~G~lfGG-~ll~~~D~aa~~~A~~~~~~---------~~vt~~id~i~F~~Pv~~G-d~l~~~a~V 101 (152) ...+. ..|.|+|..|+.||| ++++||++++.++.++||.. .+||+++|+++|.+|...| ..+.+.|+| T Consensus 10 ~~~~~-~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~V 88 (357) T KOG2763 10 ESKRE-VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKV 88 (357) T ss_pred HHCCC-CCCCCCCCCCCEECCHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEEEEEE T ss_conf 33025-79986320033541047999999765444310014554468742378886678998305652364017999898 Q ss_pred EEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCC Q ss_conf 96216507999999995377888608999999999999878988022799 Q gi|254780992|r 102 RKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIRT 151 (152) Q Consensus 102 ~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~g~P~pip~ 151 (152) +++|+||||+.++|..++.. .+....+++|.||||+.|....|.|++. T Consensus 89 t~a~~sSMEv~i~V~q~~~~--~~~~~~~~kA~f~fVard~~~~~~~l~~ 136 (357) T KOG2763 89 TWAGKSSMEVSIYVMQEDLA--TGEKSLVLKATFTFVARDATNGKAPLNG 136 (357) T ss_pred EECCCCCEEEEEEEEEEHHC--CCHHHHHHEEEEEEEEECCCCCCCCCCC T ss_conf 61101526999999973001--3224320135899998147777543577 No 6 >COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism] Probab=99.49 E-value=3.2e-12 Score=91.23 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=88.4 Q ss_pred CCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCC--CEEEEEEEEEEECCCCCCCEEEEEEEEEEEC Q ss_conf 89983489998483342747843089999999999999999973898--3255752034321467573899999999621 Q gi|254780992|r 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCR--VVTKAVTELLFEKPIQVSDLVHIYTQIRKIG 105 (152) Q Consensus 28 ~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~--~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G 105 (152) -.++....+..+.|.+.|.+|.+|||.+++++|.++++++....... .+|+.+ +++|++|++.|+ +.+.|++.+.| T Consensus 31 ~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l-~i~flr~~~~g~-v~a~a~v~~~G 108 (141) T COG2050 31 IEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLEL-NINFLRPVKEGD-VTAEARVLHLG 108 (141) T ss_pred ECCCEEEEEEECCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE-EEEEECCCCCCC-EEEEEEEEEEC T ss_conf 6388289999868888188881539999999999999997202676520578999-999853777896-79999999827 Q ss_pred CCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECC Q ss_conf 6507999999995377888608999999999999878 Q gi|254780992|r 106 KTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDE 142 (152) Q Consensus 106 ~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe 142 (152) ++....+++++. ++..++++.+.+||.-++. T Consensus 109 ~~~~v~~i~v~~------~~~~~lva~~~~t~~v~~~ 139 (141) T COG2050 109 RRVAVVEIEVKN------DEGGRLVAKGTGTYAVLRK 139 (141) T ss_pred CEEEEEEEEEEE------CCCCEEEEEEEEEEEEECC T ss_conf 579999999997------8896799999999998368 No 7 >pfam03061 4HBT Thioesterase superfamily. This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (EC 3.1.2.23) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. Probab=99.42 E-value=2.9e-12 Score=91.50 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=64.4 Q ss_pred CCCEEHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEC Q ss_conf 784308999999999999999997389-8325575203432146757389999999962165079999999953 Q gi|254780992|r 47 DGNVFGGWIMSQIDIACGIRASQLCKC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCP 119 (152) Q Consensus 47 ~G~lfGG~ll~~~D~aa~~~A~~~~~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~ 119 (152) +|++|||.+++|+|++++.++.++... ...+....+++|++|++.||.|.+++++.+.|++++.++++++.+. T Consensus 1 ~G~vhGG~~~~~~D~a~~~~~~~~~~~~~~~~t~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~i~~~~ 74 (79) T pfam03061 1 GGVVHGGVYLALADEAAGAAARSLGGSGQVVVVVELNIDFLRPARLGDVLTVEARVVRLGRTSAVVEVEVRDED 74 (79) T ss_pred CCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEECC T ss_conf 98485899999999999999997578897437999998999960579889999999986873999999999589 No 8 >cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ). Probab=99.41 E-value=1.1e-11 Score=88.04 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=85.6 Q ss_pred CCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEC Q ss_conf 89983489998483342747843089999999999999999973--8983255752034321467573899999999621 Q gi|254780992|r 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLC--KCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIG 105 (152) Q Consensus 28 ~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~--~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G 105 (152) ..++.+.++..+.|.+.|+.|.+|||.++.++|++++.++.... ....+|+.+ +++|++|++. +.+.++|++.+.| T Consensus 9 ~~~g~~~~~~~~~~~~~n~~g~~HGG~~~~l~D~~~g~~~~~~~~~~~~~vt~~l-~i~fl~p~~~-~~l~~~a~v~~~g 86 (113) T cd03443 9 VGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDL-NVNYLRPARG-GDLTARARVVKLG 86 (113) T ss_pred EECCEEEEEEECCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-EEEEECCCCC-CEEEEEEEEEEEC T ss_conf 9799999999989899599994807887788878899999851566502076215-7999757899-7699999999958 Q ss_pred CCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEE Q ss_conf 650799999999537788860899999999999 Q gi|254780992|r 106 KTSVTIYCDVWTCPRNASSDVLQKTCEATVVMV 138 (152) Q Consensus 106 ~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfV 138 (152) ++...+++++|... + +.+.++.-||. T Consensus 87 ~~~~~~~~~i~~~~-----g--~~~A~~~~~~~ 112 (113) T cd03443 87 RRLAVVEVEVTDED-----G--KLVATARGTFA 112 (113) T ss_pred CCEEEEEEEEEECC-----C--CEEEEEEEEEE T ss_conf 88999999999599-----9--99999999998 No 9 >PRK11688 hypothetical protein; Provisional Probab=99.16 E-value=2e-09 Score=74.82 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=79.2 Q ss_pred CCCCEEEEEEECHHHCCC--CCCEEHHHHHHHHHHHHHHHHHHHCC---------------CCCEEEEEEEEEEECCCCC Q ss_conf 998348999848334274--78430899999999999999999738---------------9832557520343214675 Q gi|254780992|r 29 SSGVLTLKIQTMPTDVNL--DGNVFGGWIMSQIDIACGIRASQLCK---------------CRVVTKAVTELLFEKPIQV 91 (152) Q Consensus 29 ~~~~~~l~~~~~P~~~N~--~G~lfGG~ll~~~D~aa~~~A~~~~~---------------~~~vt~~id~i~F~~Pv~~ 91 (152) ..+.+.++.-..|+..|. +|.+|||.+.+.+|.+++.++..... .++.|+.+ +++|++|.+ T Consensus 35 ~~g~~~l~lp~r~elign~~~g~lHGGVi~allD~a~g~Aa~~~~~~~~~~~~~~~~~~~~~~~aTidl-~v~yLrpa~- 112 (154) T PRK11688 35 EPEFVELRFKMQPELVGNIAQSILHGGVIASVLDVAGGLVAVGGILARHEDISEEELQQRLSRLGTIDL-RVDYLRPGR- 112 (154) T ss_pred ECCEEEEEEECCHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEE-EEEEECCCC- T ss_conf 599799998688898389877778678899999998899999740320477544565420355304786-631104689- Q ss_pred CCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEE Q ss_conf 73899999999621650799999999537788860899999999999 Q gi|254780992|r 92 SDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMV 138 (152) Q Consensus 92 Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfV 138 (152) |+.+..+|+|.+.||+-..+++++|.+ ++ +++.+|.-||. T Consensus 113 g~~l~a~a~v~r~Gr~va~~~~~~~~~-----~g--~lvA~a~~tf~ 152 (154) T PRK11688 113 GERFTATASVLRAGNKVAVARMELHNE-----QG--THIASGTATYM 152 (154) T ss_pred CCEEEEEEEEEECCCCEEEEEEEEECC-----CC--CEEEEEEEEEE T ss_conf 980899999997179799999999989-----99--88999999996 No 10 >PRK10254 hypothetical protein; Provisional Probab=99.14 E-value=1.4e-09 Score=75.76 Aligned_cols=125 Identities=12% Similarity=0.133 Sum_probs=92.9 Q ss_pred HHEEEEEEEECCCHHEEEEECCCCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCC-C-CCEEEEEEEE Q ss_conf 0000487441161012233305899834899984833427478430899999999999999999738-9-8325575203 Q gi|254780992|r 6 KNINLLLINIITKKEVLMVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCK-C-RVVTKAVTEL 83 (152) Q Consensus 6 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~-~-~~vt~~id~i 83 (152) ++||.+--+.+...-.+...+. .++.++.++-+-|.+..++|.+|||....++|.+|+++|..+.. + .+|+..+ +. T Consensus 10 ~~ln~~~~~tl~~~LGI~~t~~-~~~~v~a~mpV~~~~~QP~G~LHGGa~~aLAEt~~s~aa~~~~~~g~~~vgiei-n~ 87 (137) T PRK10254 10 DELNATSDNTMVAHLGIVYTRL-GDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTEL-NA 87 (137) T ss_pred HHHHHHCCCCHHHHCCEEEEEE-CCCEEEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHEECCCCCEEEEEEE-EE T ss_conf 9995546354678569099995-399699999857001586437500135589999987750023289946999997-20 Q ss_pred EEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEE Q ss_conf 432146757389999999962165079999999953778886089999999999998 Q gi|254780992|r 84 LFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAV 140 (152) Q Consensus 84 ~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVav 140 (152) +|++|++.|. ++..|+..|.|||+.--+++++.+ +.++++.+.+|.--+ T Consensus 88 nhlr~v~~G~-v~a~A~~ih~GrttqvW~i~i~de-------~grl~~~~rlT~~Vl 136 (137) T PRK10254 88 THHRPVSEGK-VRGVCQPLHLGRQNQSWEIVVFDE-------QGRRCCTCRLGTAVL 136 (137) T ss_pred EEEECCCCCE-EEEEEEEEECCCCEEEEEEEEECC-------CCCEEEEEEEEEEEE T ss_conf 1751045877-999999985365359999999988-------999998668887662 No 11 >KOG3328 consensus Probab=99.13 E-value=4.7e-10 Score=78.52 Aligned_cols=89 Identities=12% Similarity=0.192 Sum_probs=75.8 Q ss_pred CCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCE Q ss_conf 98348999848334274784308999999999999999997389-83255752034321467573899999999621650 Q gi|254780992|r 30 SGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTS 108 (152) Q Consensus 30 ~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tS 108 (152) .|.++.+..+.|.|+|+.|+||||..+.+.|..+..|+..-.+. +.|.+-+ .+.|+.|+++||.|.++|.++++|++- T Consensus 36 ~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdL-svsyL~~AklGe~l~i~a~~vr~Gk~l 114 (148) T KOG3328 36 PGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPGVSVDL-SVSYLSSAKLGEELEIEATVVRVGKTL 114 (148) T ss_pred CCEEEEEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE-EHHHCCCCCCCCEEEEEEEEEECCCEE T ss_conf 8638999995879957646534661101898876678885268888149998-855516467997699998984058637 Q ss_pred EEEEEEEEEEC Q ss_conf 79999999953 Q gi|254780992|r 109 VTIYCDVWTCP 119 (152) Q Consensus 109 m~V~V~V~~~~ 119 (152) --+.|+.|... T Consensus 115 a~t~v~l~~K~ 125 (148) T KOG3328 115 AFTDVELRRKS 125 (148) T ss_pred EEEEEEEEECC T ss_conf 89999999857 No 12 >TIGR02286 PaaD phenylacetic acid degradation protein PaaD; InterPro: IPR011973 This members of this family belong to the thioesterase superfamily IPR006683 from INTERPRO, and are nearly always found adjacent to other genes of the phenylacetic acid degradation pathway . Their function is currently unknown, but a role as thioesterases is suggested.. Probab=99.11 E-value=3.1e-10 Score=79.57 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=75.3 Q ss_pred CCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC Q ss_conf 89983489998483342747843089999999999999999973898325575203432146757389999999962165 Q gi|254780992|r 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT 107 (152) Q Consensus 28 ~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t 107 (152) -+.|...+++.|.-+++|.||+-|||+|.++.|.+-+.++ -+.+....++--.|+|++|.+.||.|+.+|+....+++ T Consensus 11 ~~pg~A~v~mtVr~dmlNgHgtaHGGflF~LAD~AFA~aC--Ns~~~~aVA~~~~idflrP~~~G~~L~A~A~ev~~~gr 88 (115) T TIGR02286 11 LGPGEARVAMTVREDMLNGHGTAHGGFLFALADSAFAYAC--NSYGDAAVAAQCTIDFLRPARAGEVLVAEAVEVSRSGR 88 (115) T ss_pred CCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHEEE--CCCCCCEEHHHCCEEEECCCCCCCEEEEEEEEEECCCC T ss_conf 0899458887876400043220115588888776631011--48751100100300010468999878998788414891 Q ss_pred EEEEEEEEE Q ss_conf 079999999 Q gi|254780992|r 108 SVTIYCDVW 116 (152) Q Consensus 108 Sm~V~V~V~ 116 (152) +=.+.|+|. T Consensus 89 tG~YDv~v~ 97 (115) T TIGR02286 89 TGVYDVEVR 97 (115) T ss_pred EEEEEEEEE T ss_conf 105888998 No 13 >PRK10800 acyl-CoA thioester hydrolase YbgC; Provisional Probab=99.10 E-value=5.8e-09 Score=72.10 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=87.3 Q ss_pred EEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHH--------CCC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECC Q ss_conf 99848334274784308999999999999999997--------389-832557520343214675738999999996216 Q gi|254780992|r 36 KIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQL--------CKC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK 106 (152) Q Consensus 36 ~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~--------~~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~ 106 (152) ...+.-.|+..+|.+|=+.-++|+++|-.-..... ..+ ..+.+.+ +++|++|++.||.|.+..++...|+ T Consensus 6 ~~rVr~~dtD~~G~V~~a~Yl~y~E~aR~e~l~~~g~~~~~l~~~~~~~vV~~~-~i~Y~~pa~~~D~l~I~~~i~~~~~ 84 (130) T PRK10800 6 PVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKM-TVEYYAPARLDDMLEVQTEITSMRG 84 (130) T ss_pred EEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEE-EEEECCCCCCCCEEEEEEEEEECCC T ss_conf 789978437899888289999999999999999829879999867994899999-8694473437989999999996697 Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCCCCCC Q ss_conf 50799999999537788860899999999999987-89880227999 Q gi|254780992|r 107 TSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKSIRTE 152 (152) Q Consensus 107 tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~pip~e 152 (152) +|+++.-+++. +++ +++++|..++|.+| +.++|+++|+| T Consensus 85 ~s~~~~~~i~~-----~d~--~l~a~a~~~~V~vd~~~~kp~~lP~~ 124 (130) T PRK10800 85 TSLVFTQRIVN-----AEN--TLLNEAEVLIVCVDPLKMKPRALPKS 124 (130) T ss_pred EEEEEEEEEEC-----CCC--EEEEEEEEEEEEEECCCCEECCCCHH T ss_conf 79999999992-----899--79999999999999999918459599 No 14 >COG0824 FcbC Predicted thioesterase [General function prediction only] Probab=99.09 E-value=1.3e-08 Score=70.01 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=92.1 Q ss_pred CEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHH-------CC-CC-CEEEEEEEEEEECCCCCCCEEEEEEEEE Q ss_conf 348999848334274784308999999999999999997-------38-98-3255752034321467573899999999 Q gi|254780992|r 32 VLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQL-------CK-CR-VVTKAVTELLFEKPIQVSDLVHIYTQIR 102 (152) Q Consensus 32 ~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~-------~~-~~-~vt~~id~i~F~~Pv~~Gd~l~~~a~V~ 102 (152) .-..+..+...|+...|.++=+..+.|+++|-.-.-... .. +. .+++. -.++|++|++.||.+.++.++. T Consensus 5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~-~~i~y~~p~~~~d~l~v~~~v~ 83 (137) T COG0824 5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVE-AEIDYLRPARLGDVLTVRTRVE 83 (137) T ss_pred CEEEEEECCHHHCCCCCEECHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEEEE-EEEEECCCCCCCCEEEEEEEEE T ss_conf 259997616999289862762689999999999999975998688731764799999-9989975664898999999999 Q ss_pred EECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCCCCCC Q ss_conf 621650799999999537788860899999999999987-89880227999 Q gi|254780992|r 103 KIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKSIRTE 152 (152) Q Consensus 103 ~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~pip~e 152 (152) ..|++|+++.-+++.+. +++++|..++|++| +.+||.++|+| T Consensus 84 ~~~~~s~~~~~~i~~~~--------~l~a~~~~~~V~v~~~~~kp~~~P~~ 126 (137) T COG0824 84 ELGGKSLTLGYEIVNED--------ELLATGETTLVCVDLKTGKPVPLPPE 126 (137) T ss_pred EECCEEEEEEEEEEECC--------EEEEEEEEEEEEEECCCCCCCCCCHH T ss_conf 70663999999999499--------99999999999998899956349999 No 15 >PRK10293 hypothetical protein; Provisional Probab=98.91 E-value=2.7e-08 Score=68.16 Aligned_cols=101 Identities=9% Similarity=0.072 Sum_probs=82.8 Q ss_pred CCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECC Q ss_conf 998348999848334274784308999999999999999997389--832557520343214675738999999996216 Q gi|254780992|r 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKC--RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK 106 (152) Q Consensus 29 ~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~--~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~ 106 (152) .+..++.++.+.|.+..++|.+|||.-..+.|.+|++++...+.+ .++.+.+ +.+|++|++.|. ++..|...|.|| T Consensus 32 ~~d~v~a~mpV~~~~~QP~G~LHGGa~~aLAEt~gS~aa~~~~~~~~~~vGiei-n~nhlrsv~~G~-v~a~A~p~h~Gr 109 (136) T PRK10293 32 GDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEI-NANHVRSAREGR-VRGVCKPLHLGS 109 (136) T ss_pred CCCEEEEEEEECHHHCCCCCEECCCEEEHHHHHHHHHHHHHCCCCCCEEEEEEE-ECCEEEECCCCE-EEEEEEEEECCC T ss_conf 499799999957221497335100110036888776677622588847999998-722310024767-999999976355 Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEEEEEE Q ss_conf 50799999999537788860899999999999 Q gi|254780992|r 107 TSVTIYCDVWTCPRNASSDVLQKTCEATVVMV 138 (152) Q Consensus 107 tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfV 138 (152) ++.--+++++.+ + .++++.+.+|.- T Consensus 110 ttqvW~i~I~de-----~--g~l~a~~R~T~~ 134 (136) T PRK10293 110 RHQVWQIEIFDE-----K--GRLCCSSRLTTA 134 (136) T ss_pred CEEEEEEEEECC-----C--CCEEEEEEEEEE T ss_conf 459999999989-----9--999999999999 No 16 >cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis. Probab=98.56 E-value=4.1e-06 Score=55.42 Aligned_cols=95 Identities=25% Similarity=0.445 Sum_probs=76.9 Q ss_pred EEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEE Q ss_conf 9998483342747843089999999999999999973--89832557520343214675738999999996216507999 Q gi|254780992|r 35 LKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLC--KCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIY 112 (152) Q Consensus 35 l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~--~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~ 112 (152) ....+.|.|.+..+.+|||.++.|+++++........ ....++..++ +.|++|++.||.+.+.+++...+++++.+. T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~~~~g~~i~~~~~~~~~~~~~~~~~ 81 (100) T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLD-VRFLRPVRPGDTLTVEAEVVRVGRSSVTVE 81 (100) T ss_pred EEEECCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-EEEEECCCCCCEEEEEEEEEECCCEEEEEE T ss_conf 9999798994989859079999999999999999856899359999999-998005879909999999998897199999 Q ss_pred EEEEEECCCCCCCEEEEEEEEEEEE Q ss_conf 9999953778886089999999999 Q gi|254780992|r 113 CDVWTCPRNASSDVLQKTCEATVVM 137 (152) Q Consensus 113 V~V~~~~~~~~~~~~~~v~~a~fTf 137 (152) .+++.. ++ +.++.+..++ T Consensus 82 ~~~~~~-----~~--~~~~~~~~~~ 99 (100) T cd03440 82 VEVRNE-----DG--KLVATATATF 99 (100) T ss_pred EEEEEC-----CC--CEEEEEEEEE T ss_conf 999989-----89--7999999998 No 17 >cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII). Probab=98.55 E-value=1.1e-05 Score=53.03 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=80.7 Q ss_pred EEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHC--------CCC-CEEEEEEEEEEECCCCCCCEEEEEEEEEEE Q ss_conf 89998483342747843089999999999999999973--------898-325575203432146757389999999962 Q gi|254780992|r 34 TLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLC--------KCR-VVTKAVTELLFEKPIQVSDLVHIYTQIRKI 104 (152) Q Consensus 34 ~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~--------~~~-~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~ 104 (152) ..+..+.|.|+...|.++-+..++|++++......+.. .+. .+++. -.+.|++|++.||.+.+..++... T Consensus 2 ~~~~~V~~~d~D~~ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~-~~~~y~~~~~~~d~i~i~~~i~~~ 80 (110) T cd00586 2 TLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVE-LEIDYLRPLRLGDRLTVETRVLRL 80 (110) T ss_pred EEEEEECHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEE-EEEEECCCCCCCCEEEEEEEEEEE T ss_conf 3989949888888881127999999999999999983543778985795189787-588985577899699999999980 Q ss_pred CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC Q ss_conf 1650799999999537788860899999999999987 Q gi|254780992|r 105 GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD 141 (152) Q Consensus 105 G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD 141 (152) |++|+....+++.. ++ +.+++|..+.|.+| T Consensus 81 ~~~~~~~~~~~~~~-----~g--~~~~~~~~~~v~~d 110 (110) T cd00586 81 GRKSFTFEQEIFRE-----DG--ELLATAETVLVCVD 110 (110) T ss_pred CCEEEEEEEEEEEC-----CC--EEEEEEEEEEEEEC T ss_conf 87899999999969-----98--59999999999989 No 18 >TIGR00369 unchar_dom_1 uncharacterized domain 1; InterPro: IPR003736 This domain is found in the PAAI protein from Escherichia coli that may be involved in phenylacetic acid degradation and in a few others that may be transcription regulators . Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus.. Probab=98.49 E-value=2.3e-06 Score=56.90 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=80.8 Q ss_pred CCCCCCCE-EEEEEECHHHCCC--CCCEEHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEEEEECCCCCCCEEEEEEE Q ss_conf 05899834-8999848334274--78430899999999999999999738--9832557520343214675738999999 Q gi|254780992|r 26 QMHSSGVL-TLKIQTMPTDVNL--DGNVFGGWIMSQIDIACGIRASQLCK--CRVVTKAVTELLFEKPIQVSDLVHIYTQ 100 (152) Q Consensus 26 ~~~~~~~~-~l~~~~~P~~~N~--~G~lfGG~ll~~~D~aa~~~A~~~~~--~~~vt~~id~i~F~~Pv~~Gd~l~~~a~ 100 (152) ....++.. .+.+.+.++..|+ .|.+|||...+++|.+++.++...+. +..++..--+++|++|+.-|+-+...++ T Consensus 11 ~~~~~~~~g~~~~p~~~~~~~~~p~g~~hGG~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~rp~~~g~~~~a~~~ 90 (122) T TIGR00369 11 EELGDGELGEAEMPVDERTLQPGPFGSLHGGVSAALADTAGGSAAGYLCLPGGAAVVGLELNVNYLRPAREGGKLRAIAE 90 (122) T ss_pred EECCCCEEEEEEEEEEHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEEECCCCCCCCCEEEEEEE T ss_conf 20587601168875202103788641001006656677653355432035110101100000000222246971688778 Q ss_pred EEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEE Q ss_conf 9962165079999999953778886089999999999 Q gi|254780992|r 101 IRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVM 137 (152) Q Consensus 101 V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTf 137 (152) +++.|++.-..+++++.+ +.+..+.+..+. T Consensus 91 ~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~ 120 (122) T TIGR00369 91 PVHLGRQTGVAEIEIVDE-------QGRLCALSRGTL 120 (122) T ss_pred EEEECCCEEEEEEEEECC-------CCCEEEEECEEE T ss_conf 863066102688898876-------674786411022 No 19 >PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional Probab=98.39 E-value=3.8e-05 Score=49.74 Aligned_cols=107 Identities=8% Similarity=0.149 Sum_probs=80.6 Q ss_pred ECCCCCCCEEEEEEECHHHC-CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEE Q ss_conf 30589983489998483342-74784308999999999999999997389832557520343214675738999999996 Q gi|254780992|r 25 CQMHSSGVLTLKIQTMPTDV-NLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRK 103 (152) Q Consensus 25 ~~~~~~~~~~l~~~~~P~~~-N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~ 103 (152) ...+++..-+.-..+.+++. -..+.+.|-+|.+++.-.|- -......+....-++.|++||++||.+.+.|+|.. T Consensus 78 idle~~~~aiSil~it~emvf~~t~iargh~lfAQAnSLAv----Avi~~~~~lt~~A~VrF~rPV~~Gd~vvAkA~V~~ 153 (185) T PRK04424 78 IDLELGRSAISILEITEEMVFSKTQIARGHHLFAQANSLAV----AVIDAELALTGKANIRFKRPVKLGERVVAKAEVVR 153 (185) T ss_pred EEECCCCEEEEEEECCHHHEECCCCEEEHHEEHHHHHHHHH----HHCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEE T ss_conf 66327960888898566674333873211100777763688----61399549999878999310566989999999999 Q ss_pred ECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCC Q ss_conf 2165079999999953778886089999999999998789 Q gi|254780992|r 104 IGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK 143 (152) Q Consensus 104 ~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~ 143 (152) ....--.|.|..++. + +.+..|.|.|+++|++ T Consensus 154 ~~gnk~~V~V~s~V~-----~---e~VF~G~F~~~~~~~~ 185 (185) T PRK04424 154 VTDNKYIVEVKSYVK-----D---ELVFKGKFIMYASSEE 185 (185) T ss_pred ECCCEEEEEEEEEEC-----C---EEEEEEEEEEEEECCC T ss_conf 729999999999989-----9---9999999999991789 No 20 >TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase; InterPro: IPR014166 The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert proton motive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism) .. Probab=98.09 E-value=5e-05 Score=49.04 Aligned_cols=88 Identities=22% Similarity=0.220 Sum_probs=65.4 Q ss_pred HHHHHHHHHHHHH-CCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEE Q ss_conf 9999999999997-389832557520343214675738999999996216507999999995377888608999999999 Q gi|254780992|r 58 QIDIACGIRASQL-CKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVV 136 (152) Q Consensus 58 ~~D~aa~~~A~~~-~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fT 136 (152) |+=.+|.-- ... -.+-...+---.++|++|+++-|.|++.+++...++.|+.+.=+|+.. .++ +..++|.+. T Consensus 34 wLR~lG~~Q-~l~~~~g~~FVVr~~~~dy~~PArlDD~L~V~t~~~~~~~Asl~f~Q~v~~~---Rg~---~~L~~A~V~ 106 (127) T TIGR02799 34 WLRALGFEQ-TLLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELKGASLVFAQEVRNK---RGD---TLLVEATVE 106 (127) T ss_pred HHHHCCCCC-HHHHCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCEEEEEEEEEEEC---CCC---EEEEEEEEE T ss_conf 786357210-3575499499998987510587354861589999986447479999999967---898---888888799 Q ss_pred EEEECC-CCCCCCCCCC Q ss_conf 999878-9880227999 Q gi|254780992|r 137 MVAVDE-KGNPKSIRTE 152 (152) Q Consensus 137 fVavDe-~g~P~pip~e 152 (152) =++||. ++||+.+|.+ T Consensus 107 ~aCv~~~~~rP~~lP~~ 123 (127) T TIGR02799 107 VACVDASDMRPRRLPAE 123 (127) T ss_pred EEEEECCCCCCCCCCHH T ss_conf 99972689897048978 No 21 >PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed Probab=98.01 E-value=0.00033 Score=44.26 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=76.7 Q ss_pred CCCHHEEEEECCC---CCCCEEEEEEEC------HHHCCCCCCEEHHH-HHHHHHHHHHHHHHHHCC----C-CCEEEEE Q ss_conf 1610122333058---998348999848------33427478430899-999999999999999738----9-8325575 Q gi|254780992|r 16 ITKKEVLMVCQMH---SSGVLTLKIQTM------PTDVNLDGNVFGGW-IMSQIDIACGIRASQLCK----C-RVVTKAV 80 (152) Q Consensus 16 ~~~~~~~~~~~~~---~~~~~~l~~~~~------P~~~N~~G~lfGG~-ll~~~D~aa~~~A~~~~~----~-~~vt~~i 80 (152) .+|+-.+|.+++- |....+-.-.+- +.|--.+ -+.=|. +++-|-.+|+++.....+ + -....++ T Consensus 17 PhR~PfL~iD~i~~~~~g~~~~~~k~vs~nE~~f~GHFP~~-PimPGvLliEamaQ~~~~l~~~~~~~~~~~~~~~l~~i 95 (149) T PRK00006 17 PHRYPFLLVDRVLELEPGKSIVAIKNVTINEPFFQGHFPGR-PVMPGVLIVEAMAQAGGVLAFKSLGKDAKGKLVYFAGI 95 (149) T ss_pred CCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE T ss_conf 99998699999999759988999996438977157758899-92864899999999999988333476779847999961 Q ss_pred EEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECC Q ss_conf 20343214675738999999996216507999999995377888608999999999999878 Q gi|254780992|r 81 TELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDE 142 (152) Q Consensus 81 d~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe 142 (152) +++.|++||.-||.|.+++++.+..+.......++++. + +.+++|.||++-+|+ T Consensus 96 ~~vkF~~~V~PGd~l~i~~~l~~~~~~~~~~~~~a~V~------g--~~v~~ae~~~~i~dk 149 (149) T PRK00006 96 DKARFRRPVVPGDQLILEVEFLKKRRGIGKFKGVAKVD------G--KLVAEAELMFAIVDK 149 (149) T ss_pred EEEEECCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC------C--EEEEEEEEEEEEECC T ss_conf 37898478799999999999999658999999999999------9--999999999999769 No 22 >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] Probab=97.77 E-value=0.00045 Score=43.48 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=74.6 Q ss_pred EEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEE Q ss_conf 99848334274784308999999999999999997389832557520343214675738999999996216507999999 Q gi|254780992|r 36 KIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDV 115 (152) Q Consensus 36 ~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V 115 (152) ...+-|+.+|..|++--|.+-+.+-+++-..-.+..+++...-++. +.|++|+.+-+.|+++.++...||.+-.++|+. T Consensus 336 t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~~niiIE~i~-iyflk~vqid~~l~I~prIl~~gR~~a~idvei 414 (432) T COG4109 336 TVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKKRNIIIENIT-IYFLKPVQIDSVLEIYPRILEEGRKFAKIDVEI 414 (432) T ss_pred EEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE-EEEECCEECCCEEEEEEEEECCCCCCCEEEEEE T ss_conf 8996664604445002788999999999999998507856878443-306522302448998410200154211467999 Q ss_pred EEEC Q ss_conf 9953 Q gi|254780992|r 116 WTCP 119 (152) Q Consensus 116 ~~~~ 119 (152) |.+. T Consensus 415 ~~~~ 418 (432) T COG4109 415 YHDG 418 (432) T ss_pred EECC T ss_conf 6076 No 23 >TIGR01750 fabZ beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; InterPro: IPR010084 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes . FabZ is the primary dehydratase involved in fatty-acid elongation in type II FAS. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. ; GO: 0016836 hydro-lyase activity, 0006633 fatty acid biosynthetic process, 0005737 cytoplasm. Probab=97.62 E-value=0.001 Score=41.44 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=62.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCC------CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC Q ss_conf 899999999999999999738------98325575203432146757389999999962165079999999953778886 Q gi|254780992|r 52 GGWIMSQIDIACGIRASQLCK------CRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSD 125 (152) Q Consensus 52 GG~ll~~~D~aa~~~A~~~~~------~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~ 125 (152) |=-+++-|-.+||+-+-..-+ .-+..+.||+..|++||--||.|.+++++...-++--.+..++.+. + T Consensus 57 GVLI~EAlAQaaGvl~~~~L~~~~~~g~~~~F~gid~akFr~pV~PGDqL~l~~e~~~~~~~i~k~~~~A~VD------G 130 (142) T TIGR01750 57 GVLIVEALAQAAGVLAILSLGGKKGKGKLVYFAGIDKAKFRKPVVPGDQLILEVEFLKKRRKIGKFKGEAEVD------G 130 (142) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC------C T ss_conf 0787888898888774205798778862899988627303566467822478788553412401578899889------9 Q ss_pred EEEEEEEEEEEEE Q ss_conf 0899999999999 Q gi|254780992|r 126 VLQKTCEATVVMV 138 (152) Q Consensus 126 ~~~~v~~a~fTfV 138 (152) +.+++|.++|. T Consensus 131 --~vaAeaei~~a 141 (142) T TIGR01750 131 --KVAAEAEITFA 141 (142) T ss_pred --EEEEEEEEEEE T ss_conf --89977888861 No 24 >cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway. Probab=97.60 E-value=0.0024 Score=39.23 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=61.6 Q ss_pred EEHHH-HHHHHHHHHHHHHHHHC---CC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCC Q ss_conf 30899-99999999999999973---89-832557520343214675738999999996216507999999995377888 Q gi|254780992|r 50 VFGGW-IMSQIDIACGIRASQLC---KC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASS 124 (152) Q Consensus 50 lfGG~-ll~~~D~aa~~~A~~~~---~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~ 124 (152) +.=|. +++-|-.+|++...... .+ .....+++++.|++||.-||.|++++++.+..+.......++++. T Consensus 44 vmPgvl~iEamaQ~~~~l~~~~~~~~~~~~~~l~~i~~~kF~~~V~PGd~l~i~~~~~~~~~~~~~~~~~~~v~------ 117 (131) T cd01288 44 IMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAYVD------ 117 (131) T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC------ T ss_conf 47748999999999999971156778980899998148889478899999999999999769999999999999------ Q ss_pred CEEEEEEEEEEEEEE Q ss_conf 608999999999999 Q gi|254780992|r 125 DVLQKTCEATVVMVA 139 (152) Q Consensus 125 ~~~~~v~~a~fTfVa 139 (152) + +.+++|.|+|+- T Consensus 118 ~--~~v~~ae~~~~i 130 (131) T cd01288 118 G--KLVAEAELMFAI 130 (131) T ss_pred C--EEEEEEEEEEEE T ss_conf 9--999999999344 No 25 >TIGR00051 TIGR00051 conserved hypothetical protein; InterPro: IPR006684 4-hydroxybenzoyl-CoA thioesterase (3.1.2.23 from EC) is an enzyme from Pseudomonas CBS-3, a soil-dwelling microbe that survives on 4-chlorobenzoate as its sole carbon source. This enzyme catalyzes the last of the three steps in the pathway from 4-chlorobenzoate to hydroxybenzoate, the cleavage of the thioester bond of 4-hydroxybenzoyl-CoA to form hydroxybenzoate.4-hydroxybenzoyl-CoA + H_2O = 4-hydroxybenzoate + CoA 4-hydroxybenzoyl-CoA thioesterase is a protein of 141 amino-acid residues that assemble as an homotetramer. An aspartate in the N-terminal domain is thought to participate in the catalytic mechanism. This enzyme is evolutionary related to a number of uncharacterised proteins.; GO: 0016787 hydrolase activity. Probab=97.46 E-value=0.0007 Score=42.34 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=75.8 Q ss_pred CHHHCCCCCCEEHHHHHHHHHHHHHHHHH--H--H------C-CC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC Q ss_conf 83342747843089999999999999999--9--7------3-89-8325575203432146757389999999962165 Q gi|254780992|r 40 MPTDVNLDGNVFGGWIMSQIDIACGIRAS--Q--L------C-KC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT 107 (152) Q Consensus 40 ~P~~~N~~G~lfGG~ll~~~D~aa~~~A~--~--~------~-~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t 107 (152) .=.|+-+.|.+|=-.-|+|+++|=+-.=. - | . ++ ..+...+ .++|++|...||.|++++++...++. T Consensus 5 ~y~dtDa~g~VyHA~YL~y~E~ARte~lr~~gi~F~q~~l~~~~~~~~vV~~~-~~~Y~~Pa~ldd~L~i~t~~~~l~g~ 83 (121) T TIGR00051 5 YYEDTDAQGIVYHANYLEYFERARTEFLRSLGIRFPQSVLEEEEGVAFVVVKI-NIEYKKPARLDDVLEIRTQIEELNGF 83 (121) T ss_pred EEEEECCCCEEEECCCEEEEEHHHHHHHHHCCCCCCHHHHHHHCCEEEEEEEE-EEEEECCCCCCCEEEEEEEEEECCCE T ss_conf 68986798638802202533103356777369965757774608504899855-64210365348578998888750564 Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCCCC Q ss_conf 0799999999537788860899999999999987-898802279 Q gi|254780992|r 108 SVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKSIR 150 (152) Q Consensus 108 Sm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~pip 150 (152) |+....+++..... .......++||.+| ++++|..+| T Consensus 84 ~~~f~q~i~~~~~~------l~~~~~~~~fvC~d~~~~K~~a~~ 121 (121) T TIGR00051 84 SVVFSQEIFREDEA------LLKAATKIHFVCVDLKKFKPVALP 121 (121) T ss_pred EEEEEEEEECCCHH------EECCCEEEEEEEEECCCCCEEECC T ss_conf 78999999806111------001455379999752437534439 No 26 >KOG4781 consensus Probab=97.39 E-value=0.0012 Score=40.94 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=65.6 Q ss_pred CCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEE Q ss_conf 834899984833427478430899999999999999999738-9832557520343214675738999999996216507 Q gi|254780992|r 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCK-CRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSV 109 (152) Q Consensus 31 ~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~-~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm 109 (152) ++++.-...-+.-.+.-|.+|||.|...+||+-++|+.-... ...+|+.. +++|..|++....+.+++....+-.+-. T Consensus 125 ~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanL-sisy~~pip~~~f~vi~t~~~~~~Grk~ 203 (237) T KOG4781 125 REMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANL-SISYKRPIPTNHFVVIRTQLDKVEGRKC 203 (237) T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCEEEEC-CCCCCCCCCCCEEEEEECCHHHHCCCCC T ss_conf 738999833500148877522179999999999986322577400023320-3346888633328998320233308622 Q ss_pred EEEEEEEEEC Q ss_conf 9999999953 Q gi|254780992|r 110 TIYCDVWTCP 119 (152) Q Consensus 110 ~V~V~V~~~~ 119 (152) ..+.++.... T Consensus 204 ~~~g~l~~~~ 213 (237) T KOG4781 204 KTFGELNVQS 213 (237) T ss_pred CEEEEEEEEC T ss_conf 1024788704 No 27 >PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed Probab=97.14 E-value=0.012 Score=35.11 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=78.7 Q ss_pred ECCCHHEEEEECCC---CCCCEEEE------EEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHC---CC-CCEEEEEE Q ss_conf 11610122333058---99834899------98483342747843089999999999999999973---89-83255752 Q gi|254780992|r 15 IITKKEVLMVCQMH---SSGVLTLK------IQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLC---KC-RVVTKAVT 81 (152) Q Consensus 15 ~~~~~~~~~~~~~~---~~~~~~l~------~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~---~~-~~vt~~id 81 (152) +.+|+-.+|.+++. |...++-. ....+.|.-.+-.+=|=-+++-|..+|+++...-. ++ .+...++| T Consensus 330 lphR~Pfl~iD~v~~~~~~~~~~a~Knvt~nE~ff~GHFP~~pvmPGvl~iEamaQ~~~~l~l~~~~~~~~~~~y~~~i~ 409 (465) T PRK13188 330 LPHRYPFLLVDKIIEFKLDEKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNSVDNPENYSTYFMKID 409 (465) T ss_pred CCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECC T ss_conf 88989768999988506997899999357788221357899998971899999999988873204777788079999603 Q ss_pred EEEEECCCCCCCEEEEEEEEEE-ECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCC Q ss_conf 0343214675738999999996-2165079999999953778886089999999999998789 Q gi|254780992|r 82 ELLFEKPIQVSDLVHIYTQIRK-IGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK 143 (152) Q Consensus 82 ~i~F~~Pv~~Gd~l~~~a~V~~-~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~ 143 (152) ++.|++||.-||.|.++.++.. ..+.--....++++. + +++|+|.|+|.-+|.. T Consensus 410 ~~kFr~~V~PGD~l~~~~~~l~~~k~~i~k~~g~a~V~------~--~~v~eae~~a~iv~~~ 464 (465) T PRK13188 410 KVKFRRPVVPGDTLIIEAELLTPIRRGICQMDGKAYVG------G--ELVCEAELMAQIVKKK 464 (465) T ss_pred CEEECCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEC------C--EEEEEEEEEEEEEECC T ss_conf 11886886999899999999000479779999999999------9--9999999999998358 No 28 >cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension. Probab=97.06 E-value=0.023 Score=33.52 Aligned_cols=68 Identities=9% Similarity=0.126 Sum_probs=48.8 Q ss_pred CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCC Q ss_conf 43089999999999999999973898325575203432146757389999999962165079999999953778 Q gi|254780992|r 49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNA 122 (152) Q Consensus 49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~ 122 (152) .+||...+.|+..+.. .+.+........ ++.|.+|+..||.|++.++|+...... .+.+++|.++.+. T Consensus 45 i~hG~l~~~~~~~~l~----~w~g~~~~l~~~-~~rf~~pv~~Gd~lt~~g~V~~~~~~~-~v~l~~~~~nq~G 112 (123) T cd03455 45 YVNGPTLAGLVIRYVT----DWAGPDARVKSF-AFRLGAPLYAGDTLRFGGRVTAKRDDE-VVTVELWARNSEG 112 (123) T ss_pred EEEHHHHHHHHHHHHH----HHCCCCCEEEEE-EEEEECCEECCCEEEEEEEEEEECCCC-EEEEEEEEECCCC T ss_conf 7737899999999999----764998459999-999767511899899999999976886-6999999998999 No 29 >cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface. Probab=97.00 E-value=0.026 Score=33.14 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=71.3 Q ss_pred CCCCEEEEEEECHHHCCCCCC-----EEHHH-HHHHHHHHHHHHHHHHCC------CCCEEEEEEEEEEECCCCCCCEEE Q ss_conf 998348999848334274784-----30899-999999999999999738------983255752034321467573899 Q gi|254780992|r 29 SSGVLTLKIQTMPTDVNLDGN-----VFGGW-IMSQIDIACGIRASQLCK------CRVVTKAVTELLFEKPIQVSDLVH 96 (152) Q Consensus 29 ~~~~~~l~~~~~P~~~N~~G~-----lfGG~-ll~~~D~aa~~~A~~~~~------~~~vt~~id~i~F~~Pv~~Gd~l~ 96 (152) |.+.+.-...+-|++--..|. +.=|. ++++|-.++++.+..... ......++++..|++|+.-||.|. T Consensus 17 ~~~~~~~~k~v~~~~~ff~gHfp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~Pgd~l~ 96 (131) T cd00493 17 PGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLPGDTLT 96 (131) T ss_pred CCCEEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECEECCCCEEE T ss_conf 99989999992799774772057999666037999999999999741133447788358999713889934047998999 Q ss_pred EEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEE Q ss_conf 999999621650799999999537788860899999999999 Q gi|254780992|r 97 IYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMV 138 (152) Q Consensus 97 ~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfV 138 (152) +++++...+.....+..+++.. + +.++++.+++. T Consensus 97 i~v~~~~~~~~~~~~~~~~~v~------~--~~v~~~~l~~~ 130 (131) T cd00493 97 LEVELLKVRRGLGKFDGRAYVD------G--KLVAEAELMAA 130 (131) T ss_pred EEEEEEEEECCEEEEEEEEEEC------C--EEEEEEEEEEE T ss_conf 9999999889999999999999------9--99999999970 No 30 >cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene. Probab=96.75 E-value=0.041 Score=31.97 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=53.0 Q ss_pred CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEE Q ss_conf 47843089999999999999999973898325575203432146757389999999962165079999999 Q gi|254780992|r 46 LDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVW 116 (152) Q Consensus 46 ~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~ 116 (152) ....+|||+++.+.-.||... .......-++. ..|..|...+.-+.++-+..+.||+..+..|+++ T Consensus 14 ~~r~~fGG~~~Aqa~~AA~~t----v~~~~~~~S~h-~~F~~~g~~~~pi~~~V~~lr~Grs~~tr~V~a~ 79 (94) T cd03445 14 QGRGVFGGQVLAQALVAAART----VPDDRVPHSLH-SYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAV 79 (94) T ss_pred CCCCCHHHHHHHHHHHHHHHH----CCCCCCCEEEE-EEEECCCCCCCCEEEEEEEEECCCCEEEEEEEEE T ss_conf 765244279999999999953----89987635899-9980488899999999999867986798999999 No 31 >TIGR02447 yiiD_Cterm thioesterase domain, putative; InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from Shewanella oneidensis is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PF00583). The function of this protein is unknown. . Probab=96.73 E-value=0.042 Score=31.96 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=65.7 Q ss_pred CCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHH-HH----CC-CCCEEEEEEEEEEECCCCCCCEEEEEEEEEE Q ss_conf 983489998483342747843089999999999999999-97----38-9832557520343214675738999999996 Q gi|254780992|r 30 SGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRAS-QL----CK-CRVVTKAVTELLFEKPIQVSDLVHIYTQIRK 103 (152) Q Consensus 30 ~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~-~~----~~-~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~ 103 (152) +++++++-. .-...|+++|+|||-|...|--+||---+ +. -+ +.+|.+. .+|.|..||. |+ ...++.+.. T Consensus 21 ~~~l~l~aP-L~~N~N~~~T~FgGSl~~~atL~gWGll~L~l~e~~~~~g~IVi~~-~~i~Y~~PV~-~~-~~A~c~~p~ 96 (141) T TIGR02447 21 GGELRLSAP-LAANLNHKGTMFGGSLYSLATLSGWGLLWLRLQELGIDDGDIVIAD-SQIRYLAPVT-GD-PVAECEVPD 96 (141) T ss_pred CCEEEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCCCCCCC-CC-CEEEEECCC T ss_conf 878999802-2048885212037789999998766999999998178970499974-7102157857-67-235556565 Q ss_pred E-------------CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEE Q ss_conf 2-------------165079999999953778886089999999999998 Q gi|254780992|r 104 I-------------GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAV 140 (152) Q Consensus 104 ~-------------G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVav 140 (152) . ||--+.+++++... ++++ .+.+..=+||++ T Consensus 97 ~~~~~~fl~~l~~~gKAR~~l~a~i~~~----~~d~--~aa~F~G~yv~~ 140 (141) T TIGR02447 97 LESWEAFLATLQRGGKARVKLEAQISSD----GGDK--LAAKFSGEYVAL 140 (141) T ss_pred CCCCHHHHHHHHHCCCEEEEEEEEEEEC----CCCE--EEEEEEEEEEEE T ss_conf 3360444568850587048999999746----8861--458861068864 No 32 >cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown. Probab=96.69 E-value=0.015 Score=34.62 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=31.3 Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC-------EEEEEEEEE Q ss_conf 325575203432146757389999999962165-------079999999 Q gi|254780992|r 75 VVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT-------SVTIYCDVW 116 (152) Q Consensus 75 ~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t-------Sm~V~V~V~ 116 (152) ..-...+++.|.+||+.||.|.+.++|.....+ .+++..+++ T Consensus 78 ~a~lg~~~~rf~~PV~~GDtl~~~~eV~~~r~~~sr~~~Giv~~~~~~~ 126 (146) T cd03451 78 VANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGY 126 (146) T ss_pred EEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEE T ss_conf 4657840359937776999999999999987458899857999999999 No 33 >cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain. Probab=96.62 E-value=0.049 Score=31.53 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=34.6 Q ss_pred EEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEE Q ss_conf 203432146757389999999962165079999999953778886089999999999 Q gi|254780992|r 81 TELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVM 137 (152) Q Consensus 81 d~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTf 137 (152) .++.|.+|+..||.|++.++|+..-...-.+.++....+. ++ +.+.++..+- T Consensus 75 ~~~rF~~PV~~gDtl~~~~~V~~~~~~~~~v~~~~~~~nq---~g--~~V~~G~a~v 126 (128) T cd03449 75 QSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQ---NG--EVVIEGEAVV 126 (128) T ss_pred EEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEC---CC--CEEEEEEEEE T ss_conf 4799935679999999999999997899999999999968---99--9999989999 No 34 >cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene. Probab=96.41 E-value=0.042 Score=31.95 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=62.6 Q ss_pred CCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCE Q ss_conf 78430899999999999999999738983255752034321467573899999999621650799999999537788860 Q gi|254780992|r 47 DGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDV 126 (152) Q Consensus 47 ~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~ 126 (152) ...+|||.+..+.|.++...+.+..+......--..+.|+.|...++.+.++-+....|++.-...+++|-. ++ T Consensus 14 ~~~~~~~~la~~sd~~~~~~~~~~~~~~~~~sld~~~~F~~~~~~~~w~~~~v~~~~~g~~~~~~~~~~~q~-----~G- 87 (99) T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQR-----DG- 87 (99) T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEEECC-----CC- T ss_conf 889999999999999998754332677877860145786589999988999998140207951899999948-----99- Q ss_pred EEEEEEEEEEE Q ss_conf 89999999999 Q gi|254780992|r 127 LQKTCEATVVM 137 (152) Q Consensus 127 ~~~v~~a~fTf 137 (152) +++.++...| T Consensus 88 -~lvas~~q~~ 97 (99) T cd00556 88 -KLVASATQSF 97 (99) T ss_pred -CEEEEEEEEE T ss_conf -7999998135 No 35 >pfam01575 MaoC_dehydratas MaoC like domain. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase. The MaoC protein is found to share similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 4, peroxisomal hydratase-dehydrogenase-epimerase, fatty acid synthase beta subunit. Several bacterial proteins that are composed solely of this domain have (R)-specific enoyl-CoA hydratase activity. This domain is also present in the NodN nodulation protein N. Probab=96.31 E-value=0.049 Score=31.53 Aligned_cols=64 Identities=9% Similarity=-0.029 Sum_probs=39.2 Q ss_pred CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEE Q ss_conf 4308999999999999999997389832557520343214675738999999996216507999999 Q gi|254780992|r 49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDV 115 (152) Q Consensus 49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V 115 (152) .+||-+.++++.. +.+.....+...-...+++.|.+||+.||.|.++.+|+....+-..+.+++ T Consensus 52 iahG~~t~s~~~~---~~~~~~~~~~~~~~~~~~~rF~~PV~~GDtl~~~~ev~~~~~~k~~~~~~~ 115 (123) T pfam01575 52 IAHGMLTLAIARG---LVEEQGGDNVVARYGGWSVRFTGPVFPGDTLRTEVEVVGKRDGREIKVVET 115 (123) T ss_pred ECCCHHHHHHHHH---HHHHHCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEE T ss_conf 2151779999999---988872777415555217787788788999999999999986877899999 No 36 >cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Probab=96.15 E-value=0.059 Score=31.09 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=33.0 Q ss_pred CEEHHHHHHHHHHHHHHHHHHHC-CCCCE--EEEEEEEEEECCCCCCCEEEEEEEEEEECC Q ss_conf 43089999999999999999973-89832--557520343214675738999999996216 Q gi|254780992|r 49 NVFGGWIMSQIDIACGIRASQLC-KCRVV--TKAVTELLFEKPIQVSDLVHIYTQIRKIGK 106 (152) Q Consensus 49 ~lfGG~ll~~~D~aa~~~A~~~~-~~~~v--t~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~ 106 (152) -+||...++++.... . +.. ....+ -...+++.|.+|+..||.|.++++|...-. T Consensus 52 ia~G~~~~s~~~~l~---~-~~~~~~~~~~a~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~ 108 (140) T cd03446 52 IAHGLLTLSIATGLL---Q-RLGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEE 108 (140) T ss_pred CCCHHHHHHHHHHHH---H-CCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEEEEEEEE T ss_conf 334478999998876---3-16777753365123104587488889999999999999541 No 37 >cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family. Probab=95.94 E-value=0.061 Score=30.98 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=38.8 Q ss_pred CCEEHHHHHHHHHHHHHHHHHHHC---CCC-CEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCE------EEEEEEEE Q ss_conf 843089999999999999999973---898-3255752034321467573899999999621650------79999999 Q gi|254780992|r 48 GNVFGGWIMSQIDIACGIRASQLC---KCR-VVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTS------VTIYCDVW 116 (152) Q Consensus 48 G~lfGG~ll~~~D~aa~~~A~~~~---~~~-~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tS------m~V~V~V~ 116 (152) ...|||.+..=+-.++. ++.... .+. .+...++++.|.+||+.||.|.++.+|...-.+| +++..+++ T Consensus 45 ~s~fg~~ia~G~~~~~~-~~gl~~~~~~~~~~a~~g~~~lrf~~PV~~GDTi~~~~~V~e~~~~~~~~~Giv~~~~~~~ 122 (142) T cd03452 45 ASFFGKRVAHGYFVLSA-AAGLFVDPAPGPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVT 122 (142) T ss_pred HCCCCCCCCCHHHHHHH-HHHHEEECCCCCEEEECCCCEEEECCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEE T ss_conf 28899814146899999-8754851788745772344256970898999999999999998516789967999999999 No 38 >cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD). Probab=95.91 E-value=0.13 Score=29.12 Aligned_cols=65 Identities=6% Similarity=-0.034 Sum_probs=40.1 Q ss_pred CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEE Q ss_conf 43089999999999999999973898325575203432146757389999999962165079999999 Q gi|254780992|r 49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVW 116 (152) Q Consensus 49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~ 116 (152) .+||=+++.++-. +.......+...-..--...|.+||..||.|+++.+++..-+....+.++++ T Consensus 44 I~HGm~~~a~~~~---~l~~~~~~g~~~~~~~~~~rF~~pV~~GD~lt~~v~v~~~~~~~~~v~~~~~ 108 (126) T cd03447 44 ITHGMYTSAAVRA---LVETWAADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEAR 108 (126) T ss_pred CHHHHHHHHHHHH---HHHHHCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEEEE T ss_conf 6247679999999---9997437999638999987981032599999999999999789179999999 No 39 >COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism] Probab=95.86 E-value=0.13 Score=28.98 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=73.1 Q ss_pred CCCHHEEEEECCCC---CC-CEEEEEEECHHHC-----CCCCCEEHHHHH-HHHHHHHHHHHHHHCC--C-CCEEEEEEE Q ss_conf 16101223330589---98-3489998483342-----747843089999-9999999999999738--9-832557520 Q gi|254780992|r 16 ITKKEVLMVCQMHS---SG-VLTLKIQTMPTDV-----NLDGNVFGGWIM-SQIDIACGIRASQLCK--C-RVVTKAVTE 82 (152) Q Consensus 16 ~~~~~~~~~~~~~~---~~-~~~l~~~~~P~~~-----N~~G~lfGG~ll-~~~D~aa~~~A~~~~~--~-~~vt~~id~ 82 (152) .+++-.+|.+|+.. ++ .+...--+-|.+- .+..-++.|.|+ .+|-.+++..+.+... + .....++|+ T Consensus 14 phryPfLmvDrv~~~~~~g~~i~a~k~Vt~nepfF~gHFP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~ 93 (147) T COG0764 14 PHRYPFLLVDRVLEIDEEGKRIVAIKNVTINEPFFTGHFPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDN 93 (147) T ss_pred CCCCCHHHEEEEEEECCCCCEEEEEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC T ss_conf 31378120001555406995899997558888871795999997653699999999999998334367861799998513 Q ss_pred EEEECCCCCCCEEEEEEEEEEECCCEEEEEE-EEEEECCCCCCCEEEEEEEEEEEEEEECC Q ss_conf 3432146757389999999962165079999-99995377888608999999999999878 Q gi|254780992|r 83 LLFEKPIQVSDLVHIYTQIRKIGKTSVTIYC-DVWTCPRNASSDVLQKTCEATVVMVAVDE 142 (152) Q Consensus 83 i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V-~V~~~~~~~~~~~~~~v~~a~fTfVavDe 142 (152) ..|++||.-||.+.++.++...++..+...- ++. . ++ +.+++|.+.++-++. T Consensus 94 ~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~----V--dg--~~v~~a~~~~~~~~~ 146 (147) T COG0764 94 AKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVAT----V--DG--KVVAEAELLFAGVEK 146 (147) T ss_pred EEECCCCCCCCEEEEEEEEEEECCCCEEEEEEEEE----E--CC--EEEEEEEEEEEEEEC T ss_conf 33537659998799999998723224489878999----8--99--999988779998506 No 40 >PRK10526 acyl-CoA thioesterase II; Provisional Probab=95.82 E-value=0.14 Score=28.89 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=52.4 Q ss_pred CCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEE Q ss_conf 7843089999999999999999973898325575203432146757389999999962165079999999 Q gi|254780992|r 47 DGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVW 116 (152) Q Consensus 47 ~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~ 116 (152) .+.+|||+++.+.-.||..+ .......-++.. .|++|...+.-|..+-+.++-|||-.+=.|+++ T Consensus 31 ~~~vfGGqv~AQAL~AA~~T----v~~~~~~hSlH~-YFlr~G~~~~Pi~y~Ve~lrdGrSF~tR~V~A~ 95 (286) T PRK10526 31 LRQVFGGQVVGQALYAAKET----VPEERLVHSFHS-YFLRPGDSKKPIIYDVETLRDGNSFSARRVAAI 95 (286) T ss_pred CCCEECHHHHHHHHHHHHHH----CCCCCCCEEEEE-ECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEE T ss_conf 98447069999999999953----799987146666-516888999998999788745986470268999 No 41 >cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Probab=95.82 E-value=0.14 Score=28.88 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=40.1 Q ss_pred CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEE----CCCEEEEEEEEEEECC Q ss_conf 43089999999999999999973898325575203432146757389999999962----1650799999999537 Q gi|254780992|r 49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKI----GKTSVTIYCDVWTCPR 120 (152) Q Consensus 49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~----G~tSm~V~V~V~~~~~ 120 (152) .+||-+.+.|+..+. ..+.+........ ++.|.+|++.||.|++.++|+.. |+.. +.+++++.+. T Consensus 46 iahG~~~~a~~~~~~----~~~~g~~~~~~~~-~~rF~~pV~~Gdtl~~~~~V~~k~~~~~~~~--v~~~v~v~nq 114 (127) T cd03453 46 IAHGMLTMGLLGRLV----TDWVGDPGRVVSF-GVRFTKPVPVPDTLTCTGIVVEKTVADGEDA--LTVTVDATDQ 114 (127) T ss_pred EECHHHHHHHHHHHH----HHHCCCCEEEEEE-ECEEECCCCCCCEEEEEEEEEEEEECCCCCE--EEEEEEEEEC T ss_conf 080888899999987----6315997499992-0549486018999999999999898289978--9999999999 No 42 >pfam01643 Acyl-ACP_TE Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid. Probab=95.75 E-value=0.15 Score=28.70 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=80.0 Q ss_pred EEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCC---------CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC Q ss_conf 984833427478430899999999999999999738---------98325575203432146757389999999962165 Q gi|254780992|r 37 IQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCK---------CRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT 107 (152) Q Consensus 37 ~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~---------~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t 107 (152) ..+.-.++...|.+.=..|+.|+-++|+.-+....- +..=.++=-.+.+.++.+.||.|++..+.....+- T Consensus 8 ~~V~~~e~d~~g~l~l~~l~n~lqd~A~~hs~~lG~g~~~~l~~~~~~WVl~r~~i~i~r~P~~~e~i~v~Tw~~~~~~~ 87 (247) T pfam01643 8 FEIRYYEIDVNGTASIETLMNHLQEVALNQSESLGLSGDGFMEKRNLIWVVTRYEIEIDRYPAWGDVVEIETWVSSYGKF 87 (247) T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEEEEEEEECCCCCCEEEEEEEECCCCCC T ss_conf 98857822899979999999999999999999839974788974794999999999997778889989999987226897 Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCCCCCC Q ss_conf 0799999999537788860899999999999987-89880227999 Q gi|254780992|r 108 SVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKSIRTE 152 (152) Q Consensus 108 Sm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~pip~e 152 (152) ...=.-.++ + .+++ .+..|.=+++-+| +..||..+|+| T Consensus 88 ~~~R~f~i~----d-~~G~--~i~~a~S~Wvlid~~tRrp~ri~~e 126 (247) T pfam01643 88 GCYRDFLVY----D-ETGE--KLIRATSVWVLMNQDTRRLSKIPDE 126 (247) T ss_pred EEEEEEEEE----C-CCCC--EEEEEEEEEEEEECCCCCCCCCCHH T ss_conf 799989999----7-9999--9999999999999465954269978 No 43 >COG5496 Predicted thioesterase [General function prediction only] Probab=95.18 E-value=0.24 Score=27.55 Aligned_cols=86 Identities=13% Similarity=-0.029 Sum_probs=67.8 Q ss_pred CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-EEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEE Q ss_conf 430899999999999999999738983255752-0343214675738999999996216507999999995377888608 Q gi|254780992|r 49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVT-ELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVL 127 (152) Q Consensus 49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id-~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~ 127 (152) -+=-++|..||..++.-++.++-.....++..+ .+.-.+|++.|+.+.+.+++..+-..-..+.+++. +.+ T Consensus 30 VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~----~~~---- 101 (130) T COG5496 30 VLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAM----EGG---- 101 (130) T ss_pred EEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEEEEECCEEEEEEEEE----ECC---- T ss_conf 230299999999999999875276776305589886441478999759999999998563889999993----088---- Q ss_pred EEEEEEEEEEEEECC Q ss_conf 999999999999878 Q gi|254780992|r 128 QKTCEATVVMVAVDE 142 (152) Q Consensus 128 ~~v~~a~fTfVavDe 142 (152) .++.++.+|=+-+|. T Consensus 102 ~~Ig~g~h~R~iv~~ 116 (130) T COG5496 102 DKIGEGTHTRVIVPR 116 (130) T ss_pred CEEEEEEEEEEEECH T ss_conf 587145799998569 No 44 >cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. Probab=95.15 E-value=0.24 Score=27.49 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=42.7 Q ss_pred CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC----EEEEEEEEE Q ss_conf 43089999999999999999973898325575203432146757389999999962165----079999999 Q gi|254780992|r 49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT----SVTIYCDVW 116 (152) Q Consensus 49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t----Sm~V~V~V~ 116 (152) -+||.+++.++-.+.. ..............++.|.+|++.||.|++.++|.....+ .+++.+.+. T Consensus 44 ia~G~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~v~~~~~~~ 112 (127) T cd03441 44 IAHGMLTLSLASGLLV---QWLPGTDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEAR 112 (127) T ss_pred EECCHHHHHHHHHHHH---HHCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEE T ss_conf 3155449999999998---87066551356564886504679999999999999999759970999999999 No 45 >cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Probab=95.00 E-value=0.23 Score=27.58 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=26.0 Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEEEEC Q ss_conf 3255752034321467573899999999621 Q gi|254780992|r 75 VVTKAVTELLFEKPIQVSDLVHIYTQIRKIG 105 (152) Q Consensus 75 ~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G 105 (152) .....++++.|.+||+.||.|.++.+|.... T Consensus 75 ~a~~g~~~~rf~~PV~~GDTi~~~~eV~~~~ 105 (140) T cd03454 75 GGSPGIDELRWPRPVRPGDTLSVEVEVLDKR 105 (140) T ss_pred EEECCCCEEEECCCCCCCCEEEEEEEEEEEE T ss_conf 1242521258837876899999999999936 No 46 >COG2030 MaoC Acyl dehydratase [Lipid metabolism] Probab=94.82 E-value=0.2 Score=27.95 Aligned_cols=56 Identities=16% Similarity=0.052 Sum_probs=37.6 Q ss_pred EEHHHHHHHHHHHHHHHHH--HHCCCC--CEEEEEEEEEEECCCCCCCEEEEEEEEEEEC Q ss_conf 3089999999999999999--973898--3255752034321467573899999999621 Q gi|254780992|r 50 VFGGWIMSQIDIACGIRAS--QLCKCR--VVTKAVTELLFEKPIQVSDLVHIYTQIRKIG 105 (152) Q Consensus 50 lfGG~ll~~~D~aa~~~A~--~~~~~~--~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G 105 (152) .|||.+..=+-.++...+. ...... ..-...+.+.|.+||+.||.|..+.++.... T Consensus 64 ~fg~~iahG~~t~a~~~~~~~~~~~~~~~~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~ 123 (159) T COG2030 64 GFGGPIAHGMLTLALAMGLVVAALGDPSVGANLGGDEVRFVKPVFPGDTLRARVEVLDKR 123 (159) T ss_pred CCCCEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEEC T ss_conf 799885054589999999998741467404431577779707877999999999996401 No 47 >PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated Probab=94.26 E-value=0.41 Score=26.17 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=51.7 Q ss_pred CEEHHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEC--CCEEEEEEEEEEECCCCC Q ss_conf 4308999999999999999---99738983255752034321467573899999999621--650799999999537788 Q gi|254780992|r 49 NVFGGWIMSQIDIACGIRA---SQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIG--KTSVTIYCDVWTCPRNAS 123 (152) Q Consensus 49 ~lfGG~ll~~~D~aa~~~A---~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G--~tSm~V~V~V~~~~~~~~ 123 (152) +.|++.+.-=|-.++.+.| .++.+...+-.+ -++.|.+|+++||.|+++.+|...- +..+++.+.+. + . T Consensus 54 t~F~~~IaHGm~~asLiSavLGt~LPGpGTiYl~-Q~L~F~~PV~iGDtvtatVtV~ek~~~k~~V~L~~~~~--n---q 127 (465) T PRK08190 54 DGFHHVVAHGMWGGALISAVLGTRLPGPGTIYLS-QSLRFRRPVRIGDTITVTVTVREKRPEKRIVLLDCRCT--N---Q 127 (465) T ss_pred CCCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEEE-EEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEE--C---C T ss_conf 7888714307778999999974658999758765-14676678889998999999999717889899997999--0---6 Q ss_pred CCEEEEEEEEEEEEEEECCC Q ss_conf 86089999999999998789 Q gi|254780992|r 124 SDVLQKTCEATVVMVAVDEK 143 (152) Q Consensus 124 ~~~~~~v~~a~fTfVavDe~ 143 (152) ++ +.+.+|.-+-.+=.+. T Consensus 128 ~G--~~Vi~G~A~V~APt~k 145 (465) T PRK08190 128 DG--EVVISGTAEVIAPTEK 145 (465) T ss_pred CC--CEEEEEEEEEECCCCC T ss_conf 99--7999857999888544 No 48 >KOG3016 consensus Probab=94.13 E-value=0.43 Score=26.02 Aligned_cols=90 Identities=12% Similarity=0.063 Sum_probs=64.6 Q ss_pred EEEECHHHC-CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEE Q ss_conf 998483342-7478430899999999999999999738983255752034321467573899999999621650799999 Q gi|254780992|r 36 KIQTMPTDV-NLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCD 114 (152) Q Consensus 36 ~~~~~P~~~-N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~ 114 (152) +....+.-. ++++.+|||++.++.-.||.-. .....+.-++. ..|.+.+..-.-+...-+-++-|++-.+-.|+ T Consensus 25 ~~~~l~~g~~~~~~~~fGG~i~sQaLaAA~~T----V~e~f~p~SlH-~YFI~~gd~~~pI~Y~V~rirdGr~F~~R~V~ 99 (294) T KOG3016 25 LTRHLPKGREIPSNHAYGGQIASQALAAASKT----VEEMFIPHSLH-CYFILVGDPNIPIIYDVKRIRDGRNFATRSVD 99 (294) T ss_pred ECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHC----CCCCCCCCEEE-EEEEECCCCCCCEEEEEEEECCCCEEEEEEEE T ss_conf 11457645547887530414459999998702----66352522455-34321588788569883661278605899988 Q ss_pred EEEECCCCCCCEEEEEEEEEEEEE Q ss_conf 999537788860899999999999 Q gi|254780992|r 115 VWTCPRNASSDVLQKTCEATVVMV 138 (152) Q Consensus 115 V~~~~~~~~~~~~~~v~~a~fTfV 138 (152) ++- .+ +.+..+.+.|= T Consensus 100 AvQ------~~--k~If~~qiSF~ 115 (294) T KOG3016 100 AVQ------KG--KTIFTLQISFQ 115 (294) T ss_pred EEE------CC--EEEEEEEEEEC T ss_conf 788------78--28999999972 No 49 >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated Probab=93.84 E-value=0.41 Score=26.12 Aligned_cols=112 Identities=12% Similarity=0.129 Sum_probs=78.5 Q ss_pred CEEEEEEECHHHCCCCCCEE--------HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEE Q ss_conf 34899984833427478430--------8999999999999999997389832557520343214675738999999996 Q gi|254780992|r 32 VLTLKIQTMPTDVNLDGNVF--------GGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRK 103 (152) Q Consensus 32 ~~~l~~~~~P~~~N~~G~lf--------GG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~ 103 (152) -.+.+..+-|+=.-.+|.+- +=..=.+|+..|.-.+++-++....|+- ..|.|++-++.|+.+.++.++.. T Consensus 339 ~~~~~~~vp~eWiDYNGHMnea~Y~~~F~~AtD~~~~~iG~d~~Y~~~g~S~fTvE-~Hiryl~Ev~~G~~i~v~t~ll~ 417 (489) T PRK07531 339 LRLVERKVPPAWVDYNGHMTEHRYLQVFGDTTDALLEHIGVDAAYIAAGHSYYTVE-THIRHLGEAKAGQALHVETQLLG 417 (489) T ss_pred CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEE-EEEHHHHHCCCCCEEEEEEEEEE T ss_conf 37762254853031477523899999999999999998099999995489779885-22216665069984999999982 Q ss_pred ECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCCCCC Q ss_conf 21650799999999537788860899999999999987-8988022799 Q gi|254780992|r 104 IGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKSIRT 151 (152) Q Consensus 104 ~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~pip~ 151 (152) ....-+.++-+.+. +++ .++.++..-...|| +.+|..|.|. T Consensus 418 ~d~Krlhl~h~m~~-----~dg--~l~AT~E~mllHVDl~~rrs~p~~~ 459 (489) T PRK07531 418 GDEKRLHLFHTLYD-----GDG--TLIATGEHMLLHVDLKTGKAVPAPA 459 (489) T ss_pred CCCEEEEEEEEEEC-----CCC--CEEHHHHHHHEEEECCCCCCCCCCH T ss_conf 47616999999984-----898--4868750344067379987899999 No 50 >COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism] Probab=93.68 E-value=0.4 Score=26.20 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=60.1 Q ss_pred ECHHHCCCCC-CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEE Q ss_conf 4833427478-430899999999999999999738983255752034321467573899999999621650799999999 Q gi|254780992|r 39 TMPTDVNLDG-NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWT 117 (152) Q Consensus 39 ~~P~~~N~~G-~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~ 117 (152) .-.+..+..+ .+|||+++.+.-. +|.+.....-+.-++.. .|++|...-.-+.+..+..+-|++--+..|.++- T Consensus 22 frG~s~~~g~~~vFGGqvvaQAL~----Aa~~TV~~~r~vhS~h~-yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~aiQ 96 (289) T COG1946 22 FRGSSPDSGLRRVFGGQVVAQALV----AALRTVPEDRVVHSLHS-YFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAIQ 96 (289) T ss_pred EECCCCCCCCCCCCCCCHHHHHHH----HHHHHCCCCCCCCEEHH-HHCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEE T ss_conf 434787868740255124999999----99841687777643426-4448998678669998862589735767999998 Q ss_pred ECCCCCCCEEEEEEEEEEEEEE Q ss_conf 5377888608999999999999 Q gi|254780992|r 118 CPRNASSDVLQKTCEATVVMVA 139 (152) Q Consensus 118 ~~~~~~~~~~~~v~~a~fTfVa 139 (152) .+ +.++++...|-. T Consensus 97 ------~g--~~If~~~ASF~~ 110 (289) T COG1946 97 ------HG--KLIFSATASFQV 110 (289) T ss_pred ------CC--EEEEEEEEECCC T ss_conf ------99--999998700067 No 51 >PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional Probab=92.52 E-value=0.79 Score=24.48 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=43.9 Q ss_pred EEEEEECCCCCCCEEEEEEEEEEE----CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCC Q ss_conf 203432146757389999999962----1650799999999537788860899999999999987-8988022 Q gi|254780992|r 81 TELLFEKPIQVSDLVHIYTQIRKI----GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKS 148 (152) Q Consensus 81 d~i~F~~Pv~~Gd~l~~~a~V~~~----G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~p 148 (152) -...|++|+..||.|.+...|..+ |+.-+++.-++. ...+ +++.+++=|.|+-. +++.... T Consensus 89 Q~F~yhRPI~AGD~L~~~~~v~svr~~~G~diittr~~vt-----d~~G--e~V~t~~tTLv~R~gd~~~~~~ 154 (166) T PRK13691 89 QRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCT-----NDDG--EVVMEAYTTLMGQQGDNSASLK 154 (166) T ss_pred CEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEE-----CCCC--CEEEEEEEEEEEECCCCCCCEE T ss_conf 0699988701699999999999831008931899988998-----8999--9999999999986377642010 No 52 >cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear. Probab=92.20 E-value=0.86 Score=24.25 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=40.4 Q ss_pred EEHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECC---CEEEEEEEEEEEC Q ss_conf 308999999999999999997389-832557520343214675738999999996216---5079999999953 Q gi|254780992|r 50 VFGGWIMSQIDIACGIRASQLCKC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK---TSVTIYCDVWTCP 119 (152) Q Consensus 50 lfGG~ll~~~D~aa~~~A~~~~~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~---tSm~V~V~V~~~~ 119 (152) .||=..++++-....-+. ...+. ..+-...|++.|.+||++||.|+.+.++..+-. ..+.+..++..+. T Consensus 59 AHGfltLSl~~~~~~~~~-~~~~~~~~vNYG~dkvRF~~PV~vGs~vR~~~~l~~v~~~~~g~~~~~~~~tvEi 131 (149) T cd03450 59 AHGFLTLSLLPALTPQLF-RVEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEI 131 (149) T ss_pred CCHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCEEECCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEE T ss_conf 650669999998875266-7678433330033526706875679999999999998991898499999999999 No 53 >PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional Probab=90.09 E-value=1.4 Score=23.01 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=41.7 Q ss_pred CEEE--EEEEEEEECCCCCCCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEE Q ss_conf 3255--752034321467573899999999621-6507999999995377888608999999999999 Q gi|254780992|r 75 VVTK--AVTELLFEKPIQVSDLVHIYTQIRKIG-KTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVA 139 (152) Q Consensus 75 ~vt~--~id~i~F~~Pv~~Gd~l~~~a~V~~~G-~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVa 139 (152) +|.+ .+|+..|.+||..||.|.++-.+...- |..-...+-.|......++++. ...--.+|||+ T Consensus 609 pvlan~g~~~lrf~~pv~~gd~i~v~lt~k~k~~r~~~~~g~v~w~~~v~nq~~~~-va~y~~lt~v~ 675 (676) T PRK11563 609 PVLANYGLDNLRFIEPVKPGDTIQVRLTCKRKTPRNQKSYGEVRWDVEVTNQHGEP-VATYDILTLVA 675 (676) T ss_pred CEEECCCCCEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCE-EEEEEEEEEEC T ss_conf 66501274305861566899779999999980367789873699999998589987-89986540024 No 54 >PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional Probab=89.92 E-value=1.5 Score=22.92 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=42.0 Q ss_pred EEEEEEECCCCCCCEEEEEEEEEEE----CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCC Q ss_conf 5203432146757389999999962----1650799999999537788860899999999999987-89880 Q gi|254780992|r 80 VTELLFEKPIQVSDLVHIYTQIRKI----GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNP 146 (152) Q Consensus 80 id~i~F~~Pv~~Gd~l~~~a~V~~~----G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P 146 (152) =-...|++|+..||.|.+...|..+ |+.-++...+++ ...+ +++.++.-|.|.-. +++.| T Consensus 88 eQ~f~yhrPi~AGD~Lt~~~~I~~ir~~~G~d~v~~~~~vt-----~~~G--e~V~t~~sTLv~R~~~~~~~ 152 (159) T PRK13692 88 DQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVT-----NEAG--DVVQETYTTLAGRAGEDGEE 152 (159) T ss_pred CCEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEE-----CCCC--CEEEEEEEEEEEECCCCCCC T ss_conf 72489989824898999999999865339916999999999-----8999--99999999999976777886 No 55 >cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit. Probab=86.35 E-value=2.5 Score=21.57 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=28.2 Q ss_pred HHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEE Q ss_conf 97389832557520343214675738999999996216507999999 Q gi|254780992|r 69 QLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDV 115 (152) Q Consensus 69 ~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V 115 (152) .++.+...-..--...|.+||..||.|.+..|. .|+ .+.+.+++ T Consensus 63 ~~~~g~~~~~~~~~~rF~~pV~pGd~l~v~iw~--~~~-~v~~~~~~ 106 (122) T cd03448 63 AFADGDPARFKAIKVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKV 106 (122) T ss_pred HHCCCCCEEEEEEEEEECCCCCCCCEEEEEEEE--ECC-EEEEEEEE T ss_conf 675899603899998982653699989999999--799-99999999 No 56 >PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional Probab=85.38 E-value=2.8 Score=21.28 Aligned_cols=49 Identities=6% Similarity=0.052 Sum_probs=30.8 Q ss_pred HHCCCCCEEEEEEEEEEECCCCC-----CCEEEEEEEEEEECCCEEEEEEEEEEE Q ss_conf 97389832557520343214675-----738999999996216507999999995 Q gi|254780992|r 69 QLCKCRVVTKAVTELLFEKPIQV-----SDLVHIYTQIRKIGKTSVTIYCDVWTC 118 (152) Q Consensus 69 ~~~~~~~vt~~id~i~F~~Pv~~-----Gd~l~~~a~V~~~G~tSm~V~V~V~~~ 118 (152) .+.++.-..... .+.|.+|+++ |+.+++.++|...-...-++.+...+. T Consensus 72 ~w~g~pg~v~~~-~vrF~~pv~vp~~~~G~~v~~tg~V~~~d~~~~~v~l~l~~~ 125 (142) T PRK13693 72 SWVGDPGAVTEY-NVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTAT 125 (142) T ss_pred HHCCCCCEEEEE-EEEECCEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEEEEE T ss_conf 745998558999-989753388169898759999999999717788899999999 No 57 >pfam07977 FabA FabA-like domain. This enzyme domain has a HotDog fold. Probab=81.86 E-value=3.9 Score=20.41 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=42.5 Q ss_pred EHHHH-HHHHHHHHHHHHHHHC---CCCCEEEEEEEEEEECCCCCCC-EEEEEEEEEEECC---CEEEEEEEEEE Q ss_conf 08999-9999999999999973---8983255752034321467573-8999999996216---50799999999 Q gi|254780992|r 51 FGGWI-MSQIDIACGIRASQLC---KCRVVTKAVTELLFEKPIQVSD-LVHIYTQIRKIGK---TSVTIYCDVWT 117 (152) Q Consensus 51 fGG~l-l~~~D~aa~~~A~~~~---~~~~vt~~id~i~F~~Pv~~Gd-~l~~~a~V~~~G~---tSm~V~V~V~~ 117 (152) .=|.| ++-|-.++++.+.... .......+++++.|+++|.-|| .|.++.++.+++. .......++++ T Consensus 50 mPGvL~iEa~aQ~~~~~~~~~~~~~~~~~~~~~i~~~kFr~~V~PGD~~l~~ev~i~~i~~~~~~~~~~~g~a~V 124 (133) T pfam07977 50 MPGVLGLEAMAQLGGFYLLWLGGGEGKGRARFGIDEVKFRGQVTPGDKQLRYEVEIKRIGPRRGVIGIADGRALV 124 (133) T ss_pred CCCHHHHHHHHHHHHHHHECCCCCCCCCCEECCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEEEEEEE T ss_conf 883779999999999984505678885101045227899247659994999999999986168749999999999 No 58 >TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN; InterPro: IPR011966 This enzyme is proposed to act in the ring-opening step of phenylacetic acid degradation which follows ligation of the acid with coenzyme A (by PaaF) and hydroxylation by a multicomponent non-heme iron hydroxylase complex (PaaGHIJK). Gene symbols have been standardised in . This enzyme is related to aldehyde dehydrogenases.. Probab=57.88 E-value=14 Score=17.13 Aligned_cols=50 Identities=16% Similarity=0.283 Sum_probs=33.1 Q ss_pred EEHHHHHHHHHHHHHHHHHHHCCCCCEEEE--EEEEEEECCCCCCCEEEEEEEEEEE Q ss_conf 308999999999999999997389832557--5203432146757389999999962 Q gi|254780992|r 50 VFGGWIMSQIDIACGIRASQLCKCRVVTKA--VTELLFEKPIQVSDLVHIYTQIRKI 104 (152) Q Consensus 50 lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~--id~i~F~~Pv~~Gd~l~~~a~V~~~ 104 (152) .||=.+++|. ||+-.- +..-+|.+. .+++.|+.||.-||.|.++=.|.+. T Consensus 598 aHGYlvlS~A---AGLFVd--p~pGPvLANYGLe~LRFl~PV~~dDsi~V~LT~Krk 649 (690) T TIGR02278 598 AHGYLVLSAA---AGLFVD--PAPGPVLANYGLENLRFLEPVKPDDSIQVRLTVKRK 649 (690) T ss_pred HHHHHHHHHH---HCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC T ss_conf 2688899998---605326--889854731367766303567998845899842203 No 59 >TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit; InterPro: IPR012780 Carbon monoxide dehydrogenases catalyse the reversible oxidation of carbon monoxide to carbon dioxide as shown below , :CO + H(2)O + A == CO(2) + AH(2) A variety of electron acceptors can be used by these enzymes including ferredoxin, methyl viologen and benzyl viologen. Under anaerobic conditions, carbon monoxide is utilised by a number of methanogenic archaea and acetogenic, sulphate-reducing or phototrophic bacteria. Under aerobic conditions carbon monoxide can be used as sole carbon and energy source by the carboxidotrophic bacteria, a taxonomically diverse group of obligate or facultative chemolithoautotrophic species. The anaerobic dehydrogenases are mostly nickel-containing iron-sulphur enzymes, while the The aerobic enzymes categorised so far are molybdenum-containing iron-sulphur proteins. This entry represents the large subunit of the molybdenum-containing carbon monoxide dehydrogenase found in aerobic bacteria. This enzyme is a dimer of heterotrimers, where each heterotrimer consists of a small iron-sulphur subunit, a medium FAD-containing flavoprotein subunit and a large molybdopterin-containign subunit which contains the active site , . The large subunit is divided into two domains. The N-terminal domain is composed of mainly of a five-and four-stranded mixed beta-sheet and interacts with the small and medium subunits. The C-terminal domain contains a region which interacts with its counterpart in the overall dimer, providing the main dimer contact, and a beta-sheet surrounded by alpha helices. The active site located in this subunit contains a novel dinuclear heterometal [CuSMo(=O)OH] cluster.; GO: 0005507 copper ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0030151 molybdenum ion binding. Probab=53.03 E-value=11 Score=17.70 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=30.0 Q ss_pred CCHHHEEEEEEEECCCHHEEEEECCCCCCCEEEEEEEC Q ss_conf 61000004874411610122333058998348999848 Q gi|254780992|r 3 DISKNINLLLINIITKKEVLMVCQMHSSGVLTLKIQTM 40 (152) Q Consensus 3 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 40 (152) -|+|+.|+|=+.+++.-|. |+||+|..+.|.-+. T Consensus 465 GP~K~~DILGvgM~DscE~----RiHPTG~~i~R~g~~ 498 (775) T TIGR02416 465 GPSKDCDILGVGMFDSCEI----RIHPTGSAIARLGTK 498 (775) T ss_pred CCCCCCCEEECCCCCCCEE----EECCCCCEEEEEECC T ss_conf 8987611420100154425----677788378986302 No 60 >PRK11281 potassium efflux protein KefA; Provisional Probab=47.23 E-value=14 Score=17.11 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=21.9 Q ss_pred EEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEC Q ss_conf 03432146757389999999962165079999999953 Q gi|254780992|r 82 ELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCP 119 (152) Q Consensus 82 ~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~ 119 (152) =+-|-+|+++||++++.. .+|.=| .+.+++.... T Consensus 931 IiLFErPiRiGD~vTi~~---~sGtVs-kIriRATTi~ 964 (1107) T PRK11281 931 IILFERPVRIGDTVTIGT---FSGTVS-KIRIRATTIT 964 (1107) T ss_pred HHHHCCCCCCCCEEEECC---CCCEEE-EEEEEEEEEE T ss_conf 988416712476689878---454477-7886434434 No 61 >pfam00167 FGF Fibroblast growth factor. Fibroblast growth factors are a family of proteins involved in growth and differentiation in a wide range of contexts. They are found in a wide range of organisms, from nematodes to humans. Most share an internal core region of high similarity, conserved residues in which are involved in binding with their receptors. On binding, they cause dimerization of their tyrosine kinase receptors leading to intracellular signalling. There are currently four known tyrosine kinase receptors for fibroblast growth factors. These receptors can each bind several different members of this family. Members of this family have a beta trefoil structure. Most have N-terminal signal peptides and are secreted. A few lack signal sequences but are secreted anyway; still others also lack the signal peptide but are found on the cell surface and within the extracellular matrix. A third group remain intracellular. They have central roles in development, regulating cell prolif Probab=46.52 E-value=14 Score=17.11 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=14.3 Q ss_pred EEEEECCCCCCCCCCC Q ss_conf 9999878988022799 Q gi|254780992|r 136 VMVAVDEKGNPKSIRT 151 (152) Q Consensus 136 TfVavDe~g~P~pip~ 151 (152) +|||++.+|+|++.++ T Consensus 97 ~ylal~~~G~~k~g~~ 112 (123) T pfam00167 97 WYVALNKNGRPRRGNK 112 (123) T ss_pred EEEEECCCCCCCCCCC T ss_conf 8999887998934775 No 62 >smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities. Probab=43.45 E-value=17 Score=16.63 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=14.2 Q ss_pred EEEEECCCCCCCCCCC Q ss_conf 9999878988022799 Q gi|254780992|r 136 VMVAVDEKGNPKSIRT 151 (152) Q Consensus 136 TfVavDe~g~P~pip~ 151 (152) +|||++.+|+|+.-++ T Consensus 98 wyval~~~G~~r~g~~ 113 (126) T smart00442 98 WYVALNKKGRPRRGQK 113 (126) T ss_pred EEEEECCCCCCCCCCC T ss_conf 8999987998925876 No 63 >pfam09458 H_lectin H-type lectin domain. The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates. It is sometimes found in association with the F5_F8_type_C domain pfam00754. Probab=43.12 E-value=25 Score=15.73 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=46.2 Q ss_pred HCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECC Q ss_conf 7389832557520343214675738999999996216507999999995377888608999999999999878 Q gi|254780992|r 70 LCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDE 142 (152) Q Consensus 70 ~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe 142 (152) +..-+.|.+++..+++ ..+.-+.+..++..+.++++++.++.|.. ..+.++.+.|+|+++ T Consensus 13 F~~~P~V~v~l~~ld~----~~~~~~~~~~~~~~Vt~~gF~i~~~~w~~---------t~~~~~~~~w~Ai~~ 72 (72) T pfam09458 13 FSNIPQVIVSLSSLDS----DSSQNIRFDLQAENITTTGFTIVFRTWGD---------TRIYRLRISWLAIDD 72 (72) T ss_pred CCCCCEEEEEEEEEEC----CCCCCEEEEEEEEEECCCCEEEEEEEECC---------CEEEEEEEEEEEECC T ss_conf 1599989999889980----68842579999999866778999998069---------899998999999779 No 64 >PHA00430 tail fiber protein Probab=39.67 E-value=9.8 Score=18.08 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=24.1 Q ss_pred EEEECHHHCCCCCCEEHHHHHHHHHHH Q ss_conf 998483342747843089999999999 Q gi|254780992|r 36 KIQTMPTDVNLDGNVFGGWIMSQIDIA 62 (152) Q Consensus 36 ~~~~~P~~~N~~G~lfGG~ll~~~D~a 62 (152) ...+.|.|-|++|...|+++..|.+.- T Consensus 442 ~~~~~~~dGNL~g~kyg~~~d~W~~~~ 468 (568) T PHA00430 442 GQAVFPTDGNLQGTKWGGNLDKWLGAY 468 (568) T ss_pred CCEEECCCCCEEEEEECCHHHHHHHCC T ss_conf 535765898568756033066554122 No 65 >pfam07100 ASRT Anabaena sensory rhodopsin transducer. The family of bacterial Anabaena sensory rhodopsin transducers are likely to bind sugars or related metabolites. The entire protein is comprised of a single globular domain with an eight-stranded beta-sandwich fold. There are a few characteristics which define this beta-sandwich fold as being distinct from other so-named folds, and these are: 1) a well conserved tryptophan, usually following a polar residue, present at the start of the first strand; this tryptophan appears to be central to a hydrophobic interaction required to hold the two beta-sheets of the sandwich together, and 2) a nearly absolutely conserved asparagine located at the end of the second beta-strand, that hydrogen bonds with the backbone carbonyls of the residues 2 and 4 positions downstream from it, thereby stabilising the characteristic tight turn between strands 2 and 3 of the structure. Probab=37.51 E-value=30 Score=15.21 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=37.6 Q ss_pred EEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCC Q ss_conf 9962165079999999953778886089999999999998789880227999 Q gi|254780992|r 101 IRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIRTE 152 (152) Q Consensus 101 V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~g~P~pip~e 152 (152) |.++|.....+.+.+|-+.++.-..-...+..-.---+.+|+--.|.+||++ T Consensus 33 ilN~~d~~A~i~it~~feDrdPvg~y~~~v~arRt~HlR~ndl~~~~~iP~~ 84 (120) T pfam07100 33 ILNTGDEDAHLKITVYFEDRDPVGPYEVTVPARRTRHLRFNDLIDPEPIPRD 84 (120) T ss_pred EEECCCCCEEEEEEEEECCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCC T ss_conf 9757998617999999737988776678874755899982103377658889 No 66 >PRK10929 hypothetical protein; Provisional Probab=37.45 E-value=13 Score=17.35 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=22.2 Q ss_pred EEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEC Q ss_conf 03432146757389999999962165079999999953 Q gi|254780992|r 82 ELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCP 119 (152) Q Consensus 82 ~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~ 119 (152) =+-|-+|+++||++++..- +|.=| .+.+++.... T Consensus 929 IiLFErPiRiGD~VTi~~~---sGtVs-kIriRATTi~ 962 (1109) T PRK10929 929 IILFEKPIRIGDTVTIRDL---TGSVT-KINTRATTIS 962 (1109) T ss_pred HHHHCCCCCCCCEEEECCC---CCEEE-EEEEEEEEEE T ss_conf 9883167124766898784---54477-7886434534 No 67 >COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Probab=37.35 E-value=30 Score=15.19 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=45.1 Q ss_pred EEEEEECHHHCCCCCCEEHH--HHHHHHHHHHHHHHHH-HCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEC Q ss_conf 89998483342747843089--9999999999999999-738983255752034321467573899999999621 Q gi|254780992|r 34 TLKIQTMPTDVNLDGNVFGG--WIMSQIDIACGIRASQ-LCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIG 105 (152) Q Consensus 34 ~l~~~~~P~~~N~~G~lfGG--~ll~~~D~aa~~~A~~-~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G 105 (152) =.+.++---+.|..|.+|+| +||+|.|..--+-|.. +|+.. .|-..--++=..++.-|+.+.+-|.-.|.- T Consensus 110 gi~Vi~~GL~~DFrgepFe~s~~Lla~ADkv~kL~aIC~~Cg~~-At~~~Rl~~~~~a~~~~~~i~IGg~e~Y~a 183 (201) T COG1435 110 GIPVICYGLDTDFRGEPFEGSKYLLAIADKVTKLKAICNVCGRK-ATRTLRLINGGPAVYEGPQILIGGNESYEA 183 (201) T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCEEEECCCCCCHH T ss_conf 98899954465313287844899999987899988889875881-069988417988866798589879753000 No 68 >cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology). Probab=34.44 E-value=25 Score=15.64 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.1 Q ss_pred EEEEEECCCCCCCCCCC Q ss_conf 99999878988022799 Q gi|254780992|r 135 VVMVAVDEKGNPKSIRT 151 (152) Q Consensus 135 fTfVavDe~g~P~pip~ 151 (152) =+|||++.+|+|++-++ T Consensus 93 ~wylal~~~G~~r~g~~ 109 (123) T cd00058 93 RWYLALNKKGRPRRGQL 109 (123) T ss_pred CCEEEECCCCCCCCCCC T ss_conf 72999987998922654 No 69 >COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism] Probab=29.88 E-value=40 Score=14.46 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=31.2 Q ss_pred EEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCC-CCCCCCCC Q ss_conf 203432146757389999999962165079999999953778886089999999999998789-88022799 Q gi|254780992|r 81 TELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK-GNPKSIRT 151 (152) Q Consensus 81 d~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~-g~P~pip~ 151 (152) -.+++.+|...|+.++++.++....+--..-.++.. . . .+. ..+..-+|+.+|.+ -+|..++. T Consensus 61 ~~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~--~--~-gg~---Lie~~a~wilmn~dTrkp~ri~~ 124 (250) T COG3884 61 TEIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLD--G--R-GGG---LIEIEAFWILMNRDTRKPARITD 124 (250) T ss_pred EEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEEE--C--C-CCC---EEEEEEEEEEECCCCCCCEECCH T ss_conf 988775031048753687742221206789999996--4--8-881---89998999998553366424358 No 70 >pfam06256 Nucleo_LEF-12 Nucleopolyhedrovirus LEF-12 protein. This family consists of several Nucleopolyhedrovirus late expression factor-12 (LEF-12) proteins. The function of this family is unknown. Probab=28.06 E-value=16 Score=16.80 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEEEEECCCCC Q ss_conf 99999999997389832557520343214675 Q gi|254780992|r 60 DIACGIRASQLCKCRVVTKAVTELLFEKPIQV 91 (152) Q Consensus 60 D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~ 91 (152) |.|||+|+ |...++.|+-.+---.|.+|-++ T Consensus 45 DTAAWvCG-Ri~~cnfVSFRv~~~~F~~~~~~ 75 (179) T pfam06256 45 DTAAWVCG-RIDTCNFVSFRVKIAAFQHPSRA 75 (179) T ss_pred CCHHHHCC-CCCCCCEEEEEEEHHHHCCCHHH T ss_conf 40677607-75678558999877663581689 No 71 >COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Probab=23.94 E-value=52 Score=13.82 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=15.5 Q ss_pred EEEEEECCCCCCCEEEEEE Q ss_conf 2034321467573899999 Q gi|254780992|r 81 TELLFEKPIQVSDLVHIYT 99 (152) Q Consensus 81 d~i~F~~Pv~~Gd~l~~~a 99 (152) --+-|-+|+++||.+++-. T Consensus 653 lIiL~ErpvkvGD~It~g~ 671 (835) T COG3264 653 LIILFERPVKVGDTVTIGT 671 (835) T ss_pred HHHEEECCCCCCCEEEECC T ss_conf 3410355735677799878 No 72 >PTZ00085 40S ribosomal protein S28; Provisional Probab=23.32 E-value=43 Score=14.31 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=6.3 Q ss_pred EECCCCCCCEEEE Q ss_conf 3214675738999 Q gi|254780992|r 85 FEKPIQVSDLVHI 97 (152) Q Consensus 85 F~~Pv~~Gd~l~~ 97 (152) -+.|++.||+|.+ T Consensus 44 VkGPVr~GDIL~L 56 (67) T PTZ00085 44 VKGPVREGDILAL 56 (67) T ss_pred CCCCCCCCCEEEE T ss_conf 4277335649875 No 73 >pfam01200 Ribosomal_S28e Ribosomal protein S28e. Probab=23.29 E-value=45 Score=14.20 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=7.4 Q ss_pred EEECCCCCCCEEEE Q ss_conf 43214675738999 Q gi|254780992|r 84 LFEKPIQVSDLVHI 97 (152) Q Consensus 84 ~F~~Pv~~Gd~l~~ 97 (152) +-+.|++.||+|.+ T Consensus 43 NVkGPVr~GDiL~L 56 (67) T pfam01200 43 NVKGPVRVGDILML 56 (67) T ss_pred ECCCCCCCCCEEEE T ss_conf 14388456659987 No 74 >cd04457 S1_S28E S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control precursor RNA splicing and turnover in mRNA maturation process but its function in the ribosome is largely unknown. The structure contains an OB-fold found in many oligosaccharide and nucleic acid binding proteins. This implies that S28E might be involved in protein synthesis. Probab=22.62 E-value=47 Score=14.07 Aligned_cols=15 Identities=13% Similarity=0.417 Sum_probs=8.8 Q ss_pred EEECCCCCCCEEEEE Q ss_conf 432146757389999 Q gi|254780992|r 84 LFEKPIQVSDLVHIY 98 (152) Q Consensus 84 ~F~~Pv~~Gd~l~~~ 98 (152) +-+.|++.||+|.+. T Consensus 36 NVkGPVr~GDil~L~ 50 (60) T cd04457 36 NVKGPVREGDILMLL 50 (60) T ss_pred ECCCCCCCCCEEEEE T ss_conf 143884547599882 No 75 >PRK04007 rps28e 30S ribosomal protein S28e; Validated Probab=22.07 E-value=49 Score=13.98 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=5.8 Q ss_pred EECCCCCCCEEEE Q ss_conf 3214675738999 Q gi|254780992|r 85 FEKPIQVSDLVHI 97 (152) Q Consensus 85 F~~Pv~~Gd~l~~ 97 (152) -+.|+++||+|.+ T Consensus 45 VkGPVr~GDIl~L 57 (70) T PRK04007 45 VKGPVRVGDILML 57 (70) T ss_pred CCCCCCCCCEEEE T ss_conf 3388444769987 No 76 >pfam10472 CReP_N eIF2-alpha phosphatase phosphorylation constitutive repressor. This is the conserved N-terminal domain of CReP, constitutive repressor of eIF2-alpha phosphorylation/protein phosphatase 1, catalytic subunit. It functions in the dephosphorylation of eIF2-alpha under basal conditions in the absence of stress. In response to translation inhibition, there is reduced synthesis of the labile CReP that contributes to elevated levels of eIF2-alpha phosphorylation. The C-terminus, family PP1c, is shared with the apoptosis-associated protein Gadd34 and herpes simplex virus. Probab=21.10 E-value=23 Score=15.88 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=23.4 Q ss_pred CCCCCEEHHHHH-HHHHHHHHHHHHHHCCCC Q ss_conf 747843089999-999999999999973898 Q gi|254780992|r 45 NLDGNVFGGWIM-SQIDIACGIRASQLCKCR 74 (152) Q Consensus 45 N~~G~lfGG~ll-~~~D~aa~~~A~~~~~~~ 74 (152) -.-+.+|||.+= +|+|-+|+..|-|.-+++ T Consensus 82 L~WsqLfgGmiPtRWldfa~~y~aLral~gr 112 (411) T pfam10472 82 LIWSQLFGGLFPTRWLDFAASYSALRALKGR 112 (411) T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 9999986476605566532017777665146 No 77 >COG2053 RPS28A Ribosomal protein S28E/S33 [Translation, ribosomal structure and biogenesis] Probab=20.88 E-value=50 Score=13.94 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=4.4 Q ss_pred ECCCCCCCEEE Q ss_conf 21467573899 Q gi|254780992|r 86 EKPIQVSDLVH 96 (152) Q Consensus 86 ~~Pv~~Gd~l~ 96 (152) +.||++||+|. T Consensus 45 ~GPVrvgDIl~ 55 (69) T COG2053 45 KGPVRVGDILM 55 (69) T ss_pred CCCCCCCCEEE T ss_conf 37711055886 Done!