Query         gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 152
No_of_seqs    124 out of 1066
Neff          6.6 
Searched_HMMs 39220
Date          Mon May 30 02:43:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780992.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK10694 acyl-CoA thioester hy 100.0 1.5E-43       0  274.8  17.3  128   25-152     4-132 (133)
  2 COG1607 Acyl-CoA hydrolase [Li 100.0   3E-42       0  267.1  16.3  126   25-152     6-131 (157)
  3 cd03442 BFIT_BACH Brown fat-in 100.0 1.2E-35 3.1E-40  228.4  17.3  121   28-150     3-123 (123)
  4 KOG2763 consensus               99.9 7.9E-23   2E-27  153.3  11.5  123   26-149   193-315 (357)
  5 KOG2763 consensus               99.8 5.3E-19 1.4E-23  130.9   9.8  116   33-151    10-136 (357)
  6 COG2050 PaaI HGG motif-contain  99.5 3.2E-12 8.1E-17   91.2  15.7  107   28-142    31-139 (141)
  7 pfam03061 4HBT Thioesterase su  99.4 2.9E-12 7.3E-17   91.5  10.9   73   47-119     1-74  (79)
  8 cd03443 PaaI_thioesterase PaaI  99.4 1.1E-11 2.8E-16   88.0  13.7  102   28-138     9-112 (113)
  9 PRK11688 hypothetical protein;  99.2   2E-09 5.1E-14   74.8  13.8  101   29-138    35-152 (154)
 10 PRK10254 hypothetical protein;  99.1 1.4E-09 3.5E-14   75.8  12.3  125    6-140    10-136 (137)
 11 KOG3328 consensus               99.1 4.7E-10 1.2E-14   78.5   9.4   89   30-119    36-125 (148)
 12 TIGR02286 PaaD phenylacetic ac  99.1 3.1E-10 7.9E-15   79.6   7.8   87   28-116    11-97  (115)
 13 PRK10800 acyl-CoA thioester hy  99.1 5.8E-09 1.5E-13   72.1  13.9  109   36-152     6-124 (130)
 14 COG0824 FcbC Predicted thioest  99.1 1.3E-08 3.4E-13   70.0  15.4  112   32-152     5-126 (137)
 15 PRK10293 hypothetical protein;  98.9 2.7E-08   7E-13   68.2  11.3  101   29-138    32-134 (136)
 16 cd03440 hot_dog The hotdog fol  98.6 4.1E-06   1E-10   55.4  13.5   95   35-137     3-99  (100)
 17 cd00586 4HBT 4-hydroxybenzoyl-  98.5 1.1E-05 2.7E-10   53.0  15.1  100   34-141     2-110 (110)
 18 TIGR00369 unchar_dom_1 unchara  98.5 2.3E-06 5.9E-11   56.9  10.6  105   26-137    11-120 (122)
 19 PRK04424 fatty acid biosynthes  98.4 3.8E-05 9.8E-10   49.7  14.7  107   25-143    78-185 (185)
 20 TIGR02799 thio_ybgC tol-pal sy  98.1   5E-05 1.3E-09   49.0   9.9   88   58-152    34-123 (127)
 21 PRK00006 fabZ (3R)-hydroxymyri  98.0 0.00033 8.4E-09   44.3  12.9  118   16-142    17-149 (149)
 22 COG4109 Predicted transcriptio  97.8 0.00045 1.1E-08   43.5  10.1   83   36-119   336-418 (432)
 23 TIGR01750 fabZ beta-hydroxyacy  97.6   0.001 2.6E-08   41.4  10.2   79   52-138    57-141 (142)
 24 cd01288 FabZ FabZ is a 17kD be  97.6  0.0024 6.1E-08   39.2  11.8   82   50-139    44-130 (131)
 25 TIGR00051 TIGR00051 conserved   97.5  0.0007 1.8E-08   42.3   7.6  104   40-150     5-121 (121)
 26 KOG4781 consensus               97.4  0.0012 3.1E-08   40.9   8.1   88   31-119   125-213 (237)
 27 PRK13188 bifunctional UDP-3-O-  97.1   0.012 3.1E-07   35.1  11.0  121   15-143   330-464 (465)
 28 cd03455 SAV4209 SAV4209 is a S  97.1   0.023 5.7E-07   33.5  11.7   68   49-122    45-112 (123)
 29 cd00493 FabA_FabZ FabA/Z, beta  97.0   0.026 6.7E-07   33.1  13.5  102   29-138    17-130 (131)
 30 cd03445 Thioesterase_II_repeat  96.8   0.041 1.1E-06   32.0  11.0   66   46-116    14-79  (94)
 31 TIGR02447 yiiD_Cterm thioester  96.7   0.042 1.1E-06   32.0  10.8  101   30-140    21-140 (141)
 32 cd03451 FkbR2 FkbR2 is a Strep  96.7   0.015 3.7E-07   34.6   8.2   42   75-116    78-126 (146)
 33 cd03449 R_hydratase (R)-hydrat  96.6   0.049 1.3E-06   31.5  10.6   52   81-137    75-126 (128)
 34 cd00556 Thioesterase_II Thioes  96.4   0.042 1.1E-06   32.0   9.1   84   47-137    14-97  (99)
 35 pfam01575 MaoC_dehydratas MaoC  96.3   0.049 1.3E-06   31.5   9.0   64   49-115    52-115 (123)
 36 cd03446 MaoC_like MoaC_like     96.2   0.059 1.5E-06   31.1   8.7   54   49-106    52-108 (140)
 37 cd03452 MaoC_C MaoC_C  The C-t  95.9   0.061 1.6E-06   31.0   8.0   68   48-116    45-122 (142)
 38 cd03447 FAS_MaoC FAS_MaoC, the  95.9    0.13 3.2E-06   29.1  11.7   65   49-116    44-108 (126)
 39 COG0764 FabA 3-hydroxymyristoy  95.9    0.13 3.4E-06   29.0  12.1  119   16-142    14-146 (147)
 40 PRK10526 acyl-CoA thioesterase  95.8    0.14 3.6E-06   28.9  10.4   65   47-116    31-95  (286)
 41 cd03453 SAV4209_like SAV4209_l  95.8    0.14 3.6E-06   28.9  11.3   65   49-120    46-114 (127)
 42 pfam01643 Acyl-ACP_TE Acyl-ACP  95.7    0.15 3.8E-06   28.7  13.7  109   37-152     8-126 (247)
 43 COG5496 Predicted thioesterase  95.2    0.24   6E-06   27.5  11.9   86   49-142    30-116 (130)
 44 cd03441 R_hydratase_like (R)-h  95.1    0.24 6.1E-06   27.5   9.5   65   49-116    44-112 (127)
 45 cd03454 YdeM YdeM is a Bacillu  95.0    0.23 5.9E-06   27.6   8.3   31   75-105    75-105 (140)
 46 COG2030 MaoC Acyl dehydratase   94.8     0.2 5.1E-06   27.9   7.6   56   50-105    64-123 (159)
 47 PRK08190 bifunctional enoyl-Co  94.3    0.41   1E-05   26.2   9.6   87   49-143    54-145 (465)
 48 KOG3016 consensus               94.1    0.43 1.1E-05   26.0   8.3   90   36-138    25-115 (294)
 49 PRK07531 bifunctional 3-hydrox  93.8    0.41 1.1E-05   26.1   7.5  112   32-151   339-459 (489)
 50 COG1946 TesB Acyl-CoA thioeste  93.7     0.4   1E-05   26.2   7.2   88   39-139    22-110 (289)
 51 PRK13691 (3R)-hydroxyacyl-ACP   92.5    0.79   2E-05   24.5   8.9   61   81-148    89-154 (166)
 52 cd03450 NodN NodN (nodulation   92.2    0.86 2.2E-05   24.2   9.4   69   50-119    59-131 (149)
 53 PRK11563 bifunctional aldehyde  90.1     1.4 3.6E-05   23.0   6.6   64   75-139   609-675 (676)
 54 PRK13692 (3R)-hydroxyacyl-ACP   89.9     1.5 3.7E-05   22.9   8.7   60   80-146    88-152 (159)
 55 cd03448 HDE_HSD HDE_HSD  The R  86.4     2.5 6.3E-05   21.6   6.7   44   69-115    63-106 (122)
 56 PRK13693 (3R)-hydroxyacyl-ACP   85.4     2.8 7.1E-05   21.3   7.6   49   69-118    72-125 (142)
 57 pfam07977 FabA FabA-like domai  81.9     3.9 9.9E-05   20.4   9.2   67   51-117    50-124 (133)
 58 TIGR02278 PaaN-DH phenylacetic  57.9      14 0.00036   17.1   5.2   50   50-104   598-649 (690)
 59 TIGR02416 CO_dehy_Mo_lg carbon  53.0      11 0.00029   17.7   2.4   34    3-40    465-498 (775)
 60 PRK11281 potassium efflux prot  47.2      14 0.00036   17.1   2.2   34   82-119   931-964 (1107)
 61 pfam00167 FGF Fibroblast growt  46.5      14 0.00036   17.1   2.1   16  136-151    97-112 (123)
 62 smart00442 FGF Acidic and basi  43.4      17 0.00044   16.6   2.1   16  136-151    98-113 (126)
 63 pfam09458 H_lectin H-type lect  43.1      25 0.00063   15.7   9.5   60   70-142    13-72  (72)
 64 PHA00430 tail fiber protein     39.7     9.8 0.00025   18.1   0.4   27   36-62    442-468 (568)
 65 pfam07100 ASRT Anabaena sensor  37.5      30 0.00077   15.2   6.5   52  101-152    33-84  (120)
 66 PRK10929 hypothetical protein;  37.4      13 0.00033   17.4   0.7   34   82-119   929-962 (1109)
 67 COG1435 Tdk Thymidine kinase [  37.3      30 0.00077   15.2   4.8   71   34-105   110-183 (201)
 68 cd00058 FGF Acidic and basic f  34.4      25 0.00065   15.6   1.8   17  135-151    93-109 (123)
 69 COG3884 FatA Acyl-ACP thioeste  29.9      40   0.001   14.5   7.2   63   81-151    61-124 (250)
 70 pfam06256 Nucleo_LEF-12 Nucleo  28.1      16 0.00041   16.8  -0.1   31   60-91     45-75  (179)
 71 COG3264 Small-conductance mech  23.9      52  0.0013   13.8   4.1   19   81-99    653-671 (835)
 72 PTZ00085 40S ribosomal protein  23.3      43  0.0011   14.3   1.4   13   85-97     44-56  (67)
 73 pfam01200 Ribosomal_S28e Ribos  23.3      45  0.0011   14.2   1.5   14   84-97     43-56  (67)
 74 cd04457 S1_S28E S1_S28E: S28E,  22.6      47  0.0012   14.1   1.5   15   84-98     36-50  (60)
 75 PRK04007 rps28e 30S ribosomal   22.1      49  0.0012   14.0   1.5   13   85-97     45-57  (70)
 76 pfam10472 CReP_N eIF2-alpha ph  21.1      23 0.00059   15.9  -0.4   30   45-74     82-112 (411)
 77 COG2053 RPS28A Ribosomal prote  20.9      50  0.0013   13.9   1.3   11   86-96     45-55  (69)

No 1  
>PRK10694 acyl-CoA thioester hydrolase; Provisional
Probab=100.00  E-value=1.5e-43  Score=274.79  Aligned_cols=128  Identities=37%  Similarity=0.607  Sum_probs=120.3

Q ss_pred             ECCCCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEE
Q ss_conf             30589983489998483342747843089999999999999999973898325575203432146757389999999962
Q gi|254780992|r   25 CQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKI  104 (152)
Q Consensus        25 ~~~~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~  104 (152)
                      ++..|+|+++++.++||+|+|++|++|||+||+|||++|+++|+|||++++||+++|+++|++|+++||+|+++|+|+++
T Consensus         4 ~~~~~~~~l~l~~lv~P~d~N~~G~lfGG~lm~~mD~aa~i~A~r~~~~~~VTasvd~v~F~~Pv~vGdiv~~~a~V~~~   83 (133)
T PRK10694          4 THNVPQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKK   83 (133)
T ss_pred             CCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEECCCCCCCCEEEEEEEEEEE
T ss_conf             88699972599986173236868867499999999999999999973996699997618986763079899999999998


Q ss_pred             CCCEEEEEEEEEEECCCCC-CCEEEEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             1650799999999537788-86089999999999998789880227999
Q gi|254780992|r  105 GKTSVTIYCDVWTCPRNAS-SDVLQKTCEATVVMVAVDEKGNPKSIRTE  152 (152)
Q Consensus       105 G~tSm~V~V~V~~~~~~~~-~~~~~~v~~a~fTfVavDe~g~P~pip~e  152 (152)
                      |+|||+|+++||+++.... .++++++++|+|||||+|++|+|+|||+|
T Consensus        84 G~tSm~V~v~v~~~~~~~~~~g~~~~~~~a~ftfValDe~g~P~pvP~~  132 (133)
T PRK10694         84 GTTSISINIEVWVKKVASEPIGQRYKATEALFKYVAVDPEGKPRALPVE  132 (133)
T ss_pred             CCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCEECCCCC
T ss_conf             1663189999999864677777089999999999999999697579999


No 2  
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=100.00  E-value=3e-42  Score=267.07  Aligned_cols=126  Identities=35%  Similarity=0.623  Sum_probs=119.1

Q ss_pred             ECCCCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEE
Q ss_conf             30589983489998483342747843089999999999999999973898325575203432146757389999999962
Q gi|254780992|r   25 CQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKI  104 (152)
Q Consensus        25 ~~~~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~  104 (152)
                      ....|+++++++.++||+|+|++|++|||++|+|||++|+++|.++|++++||+++|.+.|++|+++||+|+++|+|+|+
T Consensus         6 ~~~~~~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~   85 (157)
T COG1607           6 TKELPEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYT   85 (157)
T ss_pred             CCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEEECCCCCCCCEEEEEEEEEEC
T ss_conf             67799862789999667766855664147999999999999999984990799995308872623049689999999544


Q ss_pred             CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             165079999999953778886089999999999998789880227999
Q gi|254780992|r  105 GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIRTE  152 (152)
Q Consensus       105 G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~g~P~pip~e  152 (152)
                      |||||+|.|+||+++...+.  .+++++|+|||||+|++|+|+|||++
T Consensus        86 GrTSm~V~Vev~~~~~~~~~--~~~~t~~~ft~VAvd~~gkP~~vp~~  131 (157)
T COG1607          86 GRTSMEVGVEVWAEDIRSGE--RRLATSAYFTFVAVDEDGKPTPVPRE  131 (157)
T ss_pred             CCCCEEEEEEEEEECCCCCC--CEEEEEEEEEEEEECCCCCCCCCCCC
T ss_conf             76428999999983266775--03744599999988899996468864


No 3  
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT).  Brain acyl-CoA hydrolase (BACH).  These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=100.00  E-value=1.2e-35  Score=228.37  Aligned_cols=121  Identities=29%  Similarity=0.475  Sum_probs=114.3

Q ss_pred             CCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC
Q ss_conf             89983489998483342747843089999999999999999973898325575203432146757389999999962165
Q gi|254780992|r   28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT  107 (152)
Q Consensus        28 ~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t  107 (152)
                      ..+..+.++.+++|+|+|.+|++|||+||+|||++|+++|++|++++++|+++|+++|++|+++||+|+++|+|+|+|++
T Consensus         3 ~~~~~~~~~~~~~P~~~N~~g~l~GG~ll~~~d~~a~~~a~~~~~~~~vt~~vd~i~F~~pv~~Gd~v~~~~~v~~~g~s   82 (123)
T cd03442           3 MEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGRT   82 (123)
T ss_pred             CCCCEEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCEEEEEEEEEEECCE
T ss_conf             66568999999882005868748689999999999999999970994699998868991235479799999999971561


Q ss_pred             EEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCCCCCC
Q ss_conf             0799999999537788860899999999999987898802279
Q gi|254780992|r  108 SVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIR  150 (152)
Q Consensus       108 Sm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~g~P~pip  150 (152)
                      ||+|+++|+++....+  +.+++++++||||++|++|||+|||
T Consensus        83 Smev~v~v~~~~~~~~--~~~~~~~~~ftfVa~d~~grp~~ip  123 (123)
T cd03442          83 SMEVGVEVEAEDPLTG--ERRLVTSAYFTFVALDEDGKPRPVP  123 (123)
T ss_pred             EEEEEEEEEEEECCCC--CEEEEEEEEEEEEEECCCCCCCCCC
T ss_conf             7999999999928999--6999999999999999994971799


No 4  
>KOG2763 consensus
Probab=99.89  E-value=7.9e-23  Score=153.33  Aligned_cols=123  Identities=18%  Similarity=0.291  Sum_probs=100.2

Q ss_pred             CCCCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEC
Q ss_conf             05899834899984833427478430899999999999999999738983255752034321467573899999999621
Q gi|254780992|r   26 QMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIG  105 (152)
Q Consensus        26 ~~~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G  105 (152)
                      .+..++.+.+-.+|+|+|.|.||++|||+||+|++|.|+++|++||++++.+.+||.|+|.+|+.+|++|.+.|.|+|+-
T Consensus       193 ~~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~~~p~~rsVD~i~F~~pVdvG~~L~f~s~V~yT~  272 (357)
T KOG2763         193 VWMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKGRPATRSVDDIEFQKPVDVGCVLTFSSFVTYTD  272 (357)
T ss_pred             EEEECCCEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCEEEEEEEEEEEEEEEC
T ss_conf             67404631378750676567667553689999999999999999738996378740433268613520999730788716


Q ss_pred             CCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf             65079999999953778886089999999999998789880227
Q gi|254780992|r  106 KTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSI  149 (152)
Q Consensus       106 ~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~g~P~pi  149 (152)
                      ..+..+.+++.++..+......+ ++..++.+..-++.+.-.+.
T Consensus       273 ~k~~~vqv~~~~~v~s~~~r~~~-i~~~F~~t~~~~~~~~~~~~  315 (357)
T KOG2763         273 NKSIYVQVKAVASVDSSQGRSRE-ITNAFHFTFSEERVGNLLPV  315 (357)
T ss_pred             CCCEEEEEEEECCCCCCCCCCCE-ECCCEEEECHHHHCCCCCCC
T ss_conf             88625898873220564224300-00322352115414455677


No 5  
>KOG2763 consensus
Probab=99.79  E-value=5.3e-19  Score=130.92  Aligned_cols=116  Identities=22%  Similarity=0.259  Sum_probs=97.6

Q ss_pred             EEEEEEECHHHCCCCCCEEHH-HHHHHHHHHHHHHHHHHCCC---------CCEEEEEEEEEEECCCCCC-CEEEEEEEE
Q ss_conf             489998483342747843089-99999999999999997389---------8325575203432146757-389999999
Q gi|254780992|r   33 LTLKIQTMPTDVNLDGNVFGG-WIMSQIDIACGIRASQLCKC---------RVVTKAVTELLFEKPIQVS-DLVHIYTQI  101 (152)
Q Consensus        33 ~~l~~~~~P~~~N~~G~lfGG-~ll~~~D~aa~~~A~~~~~~---------~~vt~~id~i~F~~Pv~~G-d~l~~~a~V  101 (152)
                      ...+. ..|.|+|..|+.||| ++++||++++.++.++||..         .+||+++|+++|.+|...| ..+.+.|+|
T Consensus        10 ~~~~~-~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~V   88 (357)
T KOG2763          10 ESKRE-VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKV   88 (357)
T ss_pred             HHCCC-CCCCCCCCCCCEECCHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEEEEEE
T ss_conf             33025-79986320033541047999999765444310014554468742378886678998305652364017999898


Q ss_pred             EEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCC
Q ss_conf             96216507999999995377888608999999999999878988022799
Q gi|254780992|r  102 RKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIRT  151 (152)
Q Consensus       102 ~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~g~P~pip~  151 (152)
                      +++|+||||+.++|..++..  .+....+++|.||||+.|....|.|++.
T Consensus        89 t~a~~sSMEv~i~V~q~~~~--~~~~~~~~kA~f~fVard~~~~~~~l~~  136 (357)
T KOG2763          89 TWAGKSSMEVSIYVMQEDLA--TGEKSLVLKATFTFVARDATNGKAPLNG  136 (357)
T ss_pred             EECCCCCEEEEEEEEEEHHC--CCHHHHHHEEEEEEEEECCCCCCCCCCC
T ss_conf             61101526999999973001--3224320135899998147777543577


No 6  
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]
Probab=99.49  E-value=3.2e-12  Score=91.23  Aligned_cols=107  Identities=20%  Similarity=0.272  Sum_probs=88.4

Q ss_pred             CCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCC--CEEEEEEEEEEECCCCCCCEEEEEEEEEEEC
Q ss_conf             89983489998483342747843089999999999999999973898--3255752034321467573899999999621
Q gi|254780992|r   28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCR--VVTKAVTELLFEKPIQVSDLVHIYTQIRKIG  105 (152)
Q Consensus        28 ~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~--~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G  105 (152)
                      -.++....+..+.|.+.|.+|.+|||.+++++|.++++++.......  .+|+.+ +++|++|++.|+ +.+.|++.+.|
T Consensus        31 ~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l-~i~flr~~~~g~-v~a~a~v~~~G  108 (141)
T COG2050          31 IEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLEL-NINFLRPVKEGD-VTAEARVLHLG  108 (141)
T ss_pred             ECCCEEEEEEECCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE-EEEEECCCCCCC-EEEEEEEEEEC
T ss_conf             6388289999868888188881539999999999999997202676520578999-999853777896-79999999827


Q ss_pred             CCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECC
Q ss_conf             6507999999995377888608999999999999878
Q gi|254780992|r  106 KTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDE  142 (152)
Q Consensus       106 ~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe  142 (152)
                      ++....+++++.      ++..++++.+.+||.-++.
T Consensus       109 ~~~~v~~i~v~~------~~~~~lva~~~~t~~v~~~  139 (141)
T COG2050         109 RRVAVVEIEVKN------DEGGRLVAKGTGTYAVLRK  139 (141)
T ss_pred             CEEEEEEEEEEE------CCCCEEEEEEEEEEEEECC
T ss_conf             579999999997------8896799999999998368


No 7  
>pfam03061 4HBT Thioesterase superfamily. This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (EC 3.1.2.23) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters.
Probab=99.42  E-value=2.9e-12  Score=91.50  Aligned_cols=73  Identities=25%  Similarity=0.393  Sum_probs=64.4

Q ss_pred             CCCEEHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEC
Q ss_conf             784308999999999999999997389-8325575203432146757389999999962165079999999953
Q gi|254780992|r   47 DGNVFGGWIMSQIDIACGIRASQLCKC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCP  119 (152)
Q Consensus        47 ~G~lfGG~ll~~~D~aa~~~A~~~~~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~  119 (152)
                      +|++|||.+++|+|++++.++.++... ...+....+++|++|++.||.|.+++++.+.|++++.++++++.+.
T Consensus         1 ~G~vhGG~~~~~~D~a~~~~~~~~~~~~~~~~t~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~i~~~~   74 (79)
T pfam03061         1 GGVVHGGVYLALADEAAGAAARSLGGSGQVVVVVELNIDFLRPARLGDVLTVEARVVRLGRTSAVVEVEVRDED   74 (79)
T ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEECC
T ss_conf             98485899999999999999997578897437999998999960579889999999986873999999999589


No 8  
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.41  E-value=1.1e-11  Score=88.04  Aligned_cols=102  Identities=20%  Similarity=0.257  Sum_probs=85.6

Q ss_pred             CCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEC
Q ss_conf             89983489998483342747843089999999999999999973--8983255752034321467573899999999621
Q gi|254780992|r   28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLC--KCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIG  105 (152)
Q Consensus        28 ~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~--~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G  105 (152)
                      ..++.+.++..+.|.+.|+.|.+|||.++.++|++++.++....  ....+|+.+ +++|++|++. +.+.++|++.+.|
T Consensus         9 ~~~g~~~~~~~~~~~~~n~~g~~HGG~~~~l~D~~~g~~~~~~~~~~~~~vt~~l-~i~fl~p~~~-~~l~~~a~v~~~g   86 (113)
T cd03443           9 VGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDL-NVNYLRPARG-GDLTARARVVKLG   86 (113)
T ss_pred             EECCEEEEEEECCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-EEEEECCCCC-CEEEEEEEEEEEC
T ss_conf             9799999999989899599994807887788878899999851566502076215-7999757899-7699999999958


Q ss_pred             CCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEE
Q ss_conf             650799999999537788860899999999999
Q gi|254780992|r  106 KTSVTIYCDVWTCPRNASSDVLQKTCEATVVMV  138 (152)
Q Consensus       106 ~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfV  138 (152)
                      ++...+++++|...     +  +.+.++.-||.
T Consensus        87 ~~~~~~~~~i~~~~-----g--~~~A~~~~~~~  112 (113)
T cd03443          87 RRLAVVEVEVTDED-----G--KLVATARGTFA  112 (113)
T ss_pred             CCEEEEEEEEEECC-----C--CEEEEEEEEEE
T ss_conf             88999999999599-----9--99999999998


No 9  
>PRK11688 hypothetical protein; Provisional
Probab=99.16  E-value=2e-09  Score=74.82  Aligned_cols=101  Identities=16%  Similarity=0.213  Sum_probs=79.2

Q ss_pred             CCCCEEEEEEECHHHCCC--CCCEEHHHHHHHHHHHHHHHHHHHCC---------------CCCEEEEEEEEEEECCCCC
Q ss_conf             998348999848334274--78430899999999999999999738---------------9832557520343214675
Q gi|254780992|r   29 SSGVLTLKIQTMPTDVNL--DGNVFGGWIMSQIDIACGIRASQLCK---------------CRVVTKAVTELLFEKPIQV   91 (152)
Q Consensus        29 ~~~~~~l~~~~~P~~~N~--~G~lfGG~ll~~~D~aa~~~A~~~~~---------------~~~vt~~id~i~F~~Pv~~   91 (152)
                      ..+.+.++.-..|+..|.  +|.+|||.+.+.+|.+++.++.....               .++.|+.+ +++|++|.+ 
T Consensus        35 ~~g~~~l~lp~r~elign~~~g~lHGGVi~allD~a~g~Aa~~~~~~~~~~~~~~~~~~~~~~~aTidl-~v~yLrpa~-  112 (154)
T PRK11688         35 EPEFVELRFKMQPELVGNIAQSILHGGVIASVLDVAGGLVAVGGILARHEDISEEELQQRLSRLGTIDL-RVDYLRPGR-  112 (154)
T ss_pred             ECCEEEEEEECCHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEE-EEEEECCCC-
T ss_conf             599799998688898389877778678899999998899999740320477544565420355304786-631104689-


Q ss_pred             CCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEE
Q ss_conf             73899999999621650799999999537788860899999999999
Q gi|254780992|r   92 SDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMV  138 (152)
Q Consensus        92 Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfV  138 (152)
                      |+.+..+|+|.+.||+-..+++++|.+     ++  +++.+|.-||.
T Consensus       113 g~~l~a~a~v~r~Gr~va~~~~~~~~~-----~g--~lvA~a~~tf~  152 (154)
T PRK11688        113 GERFTATASVLRAGNKVAVARMELHNE-----QG--THIASGTATYM  152 (154)
T ss_pred             CCEEEEEEEEEECCCCEEEEEEEEECC-----CC--CEEEEEEEEEE
T ss_conf             980899999997179799999999989-----99--88999999996


No 10 
>PRK10254 hypothetical protein; Provisional
Probab=99.14  E-value=1.4e-09  Score=75.76  Aligned_cols=125  Identities=12%  Similarity=0.133  Sum_probs=92.9

Q ss_pred             HHEEEEEEEECCCHHEEEEECCCCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCC-C-CCEEEEEEEE
Q ss_conf             0000487441161012233305899834899984833427478430899999999999999999738-9-8325575203
Q gi|254780992|r    6 KNINLLLINIITKKEVLMVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCK-C-RVVTKAVTEL   83 (152)
Q Consensus         6 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~-~-~~vt~~id~i   83 (152)
                      ++||.+--+.+...-.+...+. .++.++.++-+-|.+..++|.+|||....++|.+|+++|..+.. + .+|+..+ +.
T Consensus        10 ~~ln~~~~~tl~~~LGI~~t~~-~~~~v~a~mpV~~~~~QP~G~LHGGa~~aLAEt~~s~aa~~~~~~g~~~vgiei-n~   87 (137)
T PRK10254         10 DELNATSDNTMVAHLGIVYTRL-GDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTEL-NA   87 (137)
T ss_pred             HHHHHHCCCCHHHHCCEEEEEE-CCCEEEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHEECCCCCEEEEEEE-EE
T ss_conf             9995546354678569099995-399699999857001586437500135589999987750023289946999997-20


Q ss_pred             EEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEE
Q ss_conf             432146757389999999962165079999999953778886089999999999998
Q gi|254780992|r   84 LFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAV  140 (152)
Q Consensus        84 ~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVav  140 (152)
                      +|++|++.|. ++..|+..|.|||+.--+++++.+       +.++++.+.+|.--+
T Consensus        88 nhlr~v~~G~-v~a~A~~ih~GrttqvW~i~i~de-------~grl~~~~rlT~~Vl  136 (137)
T PRK10254         88 THHRPVSEGK-VRGVCQPLHLGRQNQSWEIVVFDE-------QGRRCCTCRLGTAVL  136 (137)
T ss_pred             EEEECCCCCE-EEEEEEEEECCCCEEEEEEEEECC-------CCCEEEEEEEEEEEE
T ss_conf             1751045877-999999985365359999999988-------999998668887662


No 11 
>KOG3328 consensus
Probab=99.13  E-value=4.7e-10  Score=78.52  Aligned_cols=89  Identities=12%  Similarity=0.192  Sum_probs=75.8

Q ss_pred             CCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCE
Q ss_conf             98348999848334274784308999999999999999997389-83255752034321467573899999999621650
Q gi|254780992|r   30 SGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTS  108 (152)
Q Consensus        30 ~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tS  108 (152)
                      .|.++.+..+.|.|+|+.|+||||..+.+.|..+..|+..-.+. +.|.+-+ .+.|+.|+++||.|.++|.++++|++-
T Consensus        36 ~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdL-svsyL~~AklGe~l~i~a~~vr~Gk~l  114 (148)
T KOG3328          36 PGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPGVSVDL-SVSYLSSAKLGEELEIEATVVRVGKTL  114 (148)
T ss_pred             CCEEEEEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE-EHHHCCCCCCCCEEEEEEEEEECCCEE
T ss_conf             8638999995879957646534661101898876678885268888149998-855516467997699998984058637


Q ss_pred             EEEEEEEEEEC
Q ss_conf             79999999953
Q gi|254780992|r  109 VTIYCDVWTCP  119 (152)
Q Consensus       109 m~V~V~V~~~~  119 (152)
                      --+.|+.|...
T Consensus       115 a~t~v~l~~K~  125 (148)
T KOG3328         115 AFTDVELRRKS  125 (148)
T ss_pred             EEEEEEEEECC
T ss_conf             89999999857


No 12 
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD; InterPro: IPR011973    This members of this family belong to the thioesterase superfamily IPR006683 from INTERPRO, and are nearly always found adjacent to other genes of the phenylacetic acid degradation pathway . Their function is currently unknown, but a role as thioesterases is suggested..
Probab=99.11  E-value=3.1e-10  Score=79.57  Aligned_cols=87  Identities=13%  Similarity=0.126  Sum_probs=75.3

Q ss_pred             CCCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC
Q ss_conf             89983489998483342747843089999999999999999973898325575203432146757389999999962165
Q gi|254780992|r   28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT  107 (152)
Q Consensus        28 ~~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t  107 (152)
                      -+.|...+++.|.-+++|.||+-|||+|.++.|.+-+.++  -+.+....++--.|+|++|.+.||.|+.+|+....+++
T Consensus        11 ~~pg~A~v~mtVr~dmlNgHgtaHGGflF~LAD~AFA~aC--Ns~~~~aVA~~~~idflrP~~~G~~L~A~A~ev~~~gr   88 (115)
T TIGR02286        11 LGPGEARVAMTVREDMLNGHGTAHGGFLFALADSAFAYAC--NSYGDAAVAAQCTIDFLRPARAGEVLVAEAVEVSRSGR   88 (115)
T ss_pred             CCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHEEE--CCCCCCEEHHHCCEEEECCCCCCCEEEEEEEEEECCCC
T ss_conf             0899458887876400043220115588888776631011--48751100100300010468999878998788414891


Q ss_pred             EEEEEEEEE
Q ss_conf             079999999
Q gi|254780992|r  108 SVTIYCDVW  116 (152)
Q Consensus       108 Sm~V~V~V~  116 (152)
                      +=.+.|+|.
T Consensus        89 tG~YDv~v~   97 (115)
T TIGR02286        89 TGVYDVEVR   97 (115)
T ss_pred             EEEEEEEEE
T ss_conf             105888998


No 13 
>PRK10800 acyl-CoA thioester hydrolase YbgC; Provisional
Probab=99.10  E-value=5.8e-09  Score=72.10  Aligned_cols=109  Identities=17%  Similarity=0.256  Sum_probs=87.3

Q ss_pred             EEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHH--------CCC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECC
Q ss_conf             99848334274784308999999999999999997--------389-832557520343214675738999999996216
Q gi|254780992|r   36 KIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQL--------CKC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK  106 (152)
Q Consensus        36 ~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~--------~~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~  106 (152)
                      ...+.-.|+..+|.+|=+.-++|+++|-.-.....        ..+ ..+.+.+ +++|++|++.||.|.+..++...|+
T Consensus         6 ~~rVr~~dtD~~G~V~~a~Yl~y~E~aR~e~l~~~g~~~~~l~~~~~~~vV~~~-~i~Y~~pa~~~D~l~I~~~i~~~~~   84 (130)
T PRK10800          6 PVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKM-TVEYYAPARLDDMLEVQTEITSMRG   84 (130)
T ss_pred             EEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEE-EEEECCCCCCCCEEEEEEEEEECCC
T ss_conf             789978437899888289999999999999999829879999867994899999-8694473437989999999996697


Q ss_pred             CEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCCCCCC
Q ss_conf             50799999999537788860899999999999987-89880227999
Q gi|254780992|r  107 TSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKSIRTE  152 (152)
Q Consensus       107 tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~pip~e  152 (152)
                      +|+++.-+++.     +++  +++++|..++|.+| +.++|+++|+|
T Consensus        85 ~s~~~~~~i~~-----~d~--~l~a~a~~~~V~vd~~~~kp~~lP~~  124 (130)
T PRK10800         85 TSLVFTQRIVN-----AEN--TLLNEAEVLIVCVDPLKMKPRALPKS  124 (130)
T ss_pred             EEEEEEEEEEC-----CCC--EEEEEEEEEEEEEECCCCEECCCCHH
T ss_conf             79999999992-----899--79999999999999999918459599


No 14 
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.09  E-value=1.3e-08  Score=70.01  Aligned_cols=112  Identities=18%  Similarity=0.250  Sum_probs=92.1

Q ss_pred             CEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHH-------CC-CC-CEEEEEEEEEEECCCCCCCEEEEEEEEE
Q ss_conf             348999848334274784308999999999999999997-------38-98-3255752034321467573899999999
Q gi|254780992|r   32 VLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQL-------CK-CR-VVTKAVTELLFEKPIQVSDLVHIYTQIR  102 (152)
Q Consensus        32 ~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~-------~~-~~-~vt~~id~i~F~~Pv~~Gd~l~~~a~V~  102 (152)
                      .-..+..+...|+...|.++=+..+.|+++|-.-.-...       .. +. .+++. -.++|++|++.||.+.++.++.
T Consensus         5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~-~~i~y~~p~~~~d~l~v~~~v~   83 (137)
T COG0824           5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVE-AEIDYLRPARLGDVLTVRTRVE   83 (137)
T ss_pred             CEEEEEECCHHHCCCCCEECHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEEEE-EEEEECCCCCCCCEEEEEEEEE
T ss_conf             259997616999289862762689999999999999975998688731764799999-9989975664898999999999


Q ss_pred             EECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCCCCCC
Q ss_conf             621650799999999537788860899999999999987-89880227999
Q gi|254780992|r  103 KIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKSIRTE  152 (152)
Q Consensus       103 ~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~pip~e  152 (152)
                      ..|++|+++.-+++.+.        +++++|..++|++| +.+||.++|+|
T Consensus        84 ~~~~~s~~~~~~i~~~~--------~l~a~~~~~~V~v~~~~~kp~~~P~~  126 (137)
T COG0824          84 ELGGKSLTLGYEIVNED--------ELLATGETTLVCVDLKTGKPVPLPPE  126 (137)
T ss_pred             EECCEEEEEEEEEEECC--------EEEEEEEEEEEEEECCCCCCCCCCHH
T ss_conf             70663999999999499--------99999999999998899956349999


No 15 
>PRK10293 hypothetical protein; Provisional
Probab=98.91  E-value=2.7e-08  Score=68.16  Aligned_cols=101  Identities=9%  Similarity=0.072  Sum_probs=82.8

Q ss_pred             CCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECC
Q ss_conf             998348999848334274784308999999999999999997389--832557520343214675738999999996216
Q gi|254780992|r   29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKC--RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK  106 (152)
Q Consensus        29 ~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~--~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~  106 (152)
                      .+..++.++.+.|.+..++|.+|||.-..+.|.+|++++...+.+  .++.+.+ +.+|++|++.|. ++..|...|.||
T Consensus        32 ~~d~v~a~mpV~~~~~QP~G~LHGGa~~aLAEt~gS~aa~~~~~~~~~~vGiei-n~nhlrsv~~G~-v~a~A~p~h~Gr  109 (136)
T PRK10293         32 GDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEI-NANHVRSAREGR-VRGVCKPLHLGS  109 (136)
T ss_pred             CCCEEEEEEEECHHHCCCCCEECCCEEEHHHHHHHHHHHHHCCCCCCEEEEEEE-ECCEEEECCCCE-EEEEEEEEECCC
T ss_conf             499799999957221497335100110036888776677622588847999998-722310024767-999999976355


Q ss_pred             CEEEEEEEEEEECCCCCCCEEEEEEEEEEEEE
Q ss_conf             50799999999537788860899999999999
Q gi|254780992|r  107 TSVTIYCDVWTCPRNASSDVLQKTCEATVVMV  138 (152)
Q Consensus       107 tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfV  138 (152)
                      ++.--+++++.+     +  .++++.+.+|.-
T Consensus       110 ttqvW~i~I~de-----~--g~l~a~~R~T~~  134 (136)
T PRK10293        110 RHQVWQIEIFDE-----K--GRLCCSSRLTTA  134 (136)
T ss_pred             CEEEEEEEEECC-----C--CCEEEEEEEEEE
T ss_conf             459999999989-----9--999999999999


No 16 
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold.  These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate.  This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=98.56  E-value=4.1e-06  Score=55.42  Aligned_cols=95  Identities=25%  Similarity=0.445  Sum_probs=76.9

Q ss_pred             EEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEE
Q ss_conf             9998483342747843089999999999999999973--89832557520343214675738999999996216507999
Q gi|254780992|r   35 LKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLC--KCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIY  112 (152)
Q Consensus        35 l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~--~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~  112 (152)
                      ....+.|.|.+..+.+|||.++.|+++++........  ....++..++ +.|++|++.||.+.+.+++...+++++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~~~~g~~i~~~~~~~~~~~~~~~~~   81 (100)
T cd03440           3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLD-VRFLRPVRPGDTLTVEAEVVRVGRSSVTVE   81 (100)
T ss_pred             EEEECCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-EEEEECCCCCCEEEEEEEEEECCCEEEEEE
T ss_conf             9999798994989859079999999999999999856899359999999-998005879909999999998897199999


Q ss_pred             EEEEEECCCCCCCEEEEEEEEEEEE
Q ss_conf             9999953778886089999999999
Q gi|254780992|r  113 CDVWTCPRNASSDVLQKTCEATVVM  137 (152)
Q Consensus       113 V~V~~~~~~~~~~~~~~v~~a~fTf  137 (152)
                      .+++..     ++  +.++.+..++
T Consensus        82 ~~~~~~-----~~--~~~~~~~~~~   99 (100)
T cd03440          82 VEVRNE-----DG--KLVATATATF   99 (100)
T ss_pred             EEEEEC-----CC--CEEEEEEEEE
T ss_conf             999989-----89--7999999998


No 17 
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites.  There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=98.55  E-value=1.1e-05  Score=53.03  Aligned_cols=100  Identities=21%  Similarity=0.296  Sum_probs=80.7

Q ss_pred             EEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHC--------CCC-CEEEEEEEEEEECCCCCCCEEEEEEEEEEE
Q ss_conf             89998483342747843089999999999999999973--------898-325575203432146757389999999962
Q gi|254780992|r   34 TLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLC--------KCR-VVTKAVTELLFEKPIQVSDLVHIYTQIRKI  104 (152)
Q Consensus        34 ~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~--------~~~-~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~  104 (152)
                      ..+..+.|.|+...|.++-+..++|++++......+..        .+. .+++. -.+.|++|++.||.+.+..++...
T Consensus         2 ~~~~~V~~~d~D~~ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~-~~~~y~~~~~~~d~i~i~~~i~~~   80 (110)
T cd00586           2 TLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVE-LEIDYLRPLRLGDRLTVETRVLRL   80 (110)
T ss_pred             EEEEEECHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEE-EEEEECCCCCCCCEEEEEEEEEEE
T ss_conf             3989949888888881127999999999999999983543778985795189787-588985577899699999999980


Q ss_pred             CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC
Q ss_conf             1650799999999537788860899999999999987
Q gi|254780992|r  105 GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD  141 (152)
Q Consensus       105 G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD  141 (152)
                      |++|+....+++..     ++  +.+++|..+.|.+|
T Consensus        81 ~~~~~~~~~~~~~~-----~g--~~~~~~~~~~v~~d  110 (110)
T cd00586          81 GRKSFTFEQEIFRE-----DG--ELLATAETVLVCVD  110 (110)
T ss_pred             CCEEEEEEEEEEEC-----CC--EEEEEEEEEEEEEC
T ss_conf             87899999999969-----98--59999999999989


No 18 
>TIGR00369 unchar_dom_1 uncharacterized domain 1; InterPro: IPR003736   This domain is found in the PAAI protein from Escherichia coli that may be involved in phenylacetic acid degradation and in a few others that may be transcription regulators . Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus..
Probab=98.49  E-value=2.3e-06  Score=56.90  Aligned_cols=105  Identities=13%  Similarity=0.135  Sum_probs=80.8

Q ss_pred             CCCCCCCE-EEEEEECHHHCCC--CCCEEHHHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEEEEECCCCCCCEEEEEEE
Q ss_conf             05899834-8999848334274--78430899999999999999999738--9832557520343214675738999999
Q gi|254780992|r   26 QMHSSGVL-TLKIQTMPTDVNL--DGNVFGGWIMSQIDIACGIRASQLCK--CRVVTKAVTELLFEKPIQVSDLVHIYTQ  100 (152)
Q Consensus        26 ~~~~~~~~-~l~~~~~P~~~N~--~G~lfGG~ll~~~D~aa~~~A~~~~~--~~~vt~~id~i~F~~Pv~~Gd~l~~~a~  100 (152)
                      ....++.. .+.+.+.++..|+  .|.+|||...+++|.+++.++...+.  +..++..--+++|++|+.-|+-+...++
T Consensus        11 ~~~~~~~~g~~~~p~~~~~~~~~p~g~~hGG~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~rp~~~g~~~~a~~~   90 (122)
T TIGR00369        11 EELGDGELGEAEMPVDERTLQPGPFGSLHGGVSAALADTAGGSAAGYLCLPGGAAVVGLELNVNYLRPAREGGKLRAIAE   90 (122)
T ss_pred             EECCCCEEEEEEEEEEHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEEECCCCCCCCCEEEEEEE
T ss_conf             20587601168875202103788641001006656677653355432035110101100000000222246971688778


Q ss_pred             EEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEE
Q ss_conf             9962165079999999953778886089999999999
Q gi|254780992|r  101 IRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVM  137 (152)
Q Consensus       101 V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTf  137 (152)
                      +++.|++.-..+++++.+       +.+..+.+..+.
T Consensus        91 ~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~  120 (122)
T TIGR00369        91 PVHLGRQTGVAEIEIVDE-------QGRLCALSRGTL  120 (122)
T ss_pred             EEEECCCEEEEEEEEECC-------CCCEEEEECEEE
T ss_conf             863066102688898876-------674786411022


No 19 
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=98.39  E-value=3.8e-05  Score=49.74  Aligned_cols=107  Identities=8%  Similarity=0.149  Sum_probs=80.6

Q ss_pred             ECCCCCCCEEEEEEECHHHC-CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf             30589983489998483342-74784308999999999999999997389832557520343214675738999999996
Q gi|254780992|r   25 CQMHSSGVLTLKIQTMPTDV-NLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRK  103 (152)
Q Consensus        25 ~~~~~~~~~~l~~~~~P~~~-N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~  103 (152)
                      ...+++..-+.-..+.+++. -..+.+.|-+|.+++.-.|-    -......+....-++.|++||++||.+.+.|+|..
T Consensus        78 idle~~~~aiSil~it~emvf~~t~iargh~lfAQAnSLAv----Avi~~~~~lt~~A~VrF~rPV~~Gd~vvAkA~V~~  153 (185)
T PRK04424         78 IDLELGRSAISILEITEEMVFSKTQIARGHHLFAQANSLAV----AVIDAELALTGKANIRFKRPVKLGERVVAKAEVVR  153 (185)
T ss_pred             EEECCCCEEEEEEECCHHHEECCCCEEEHHEEHHHHHHHHH----HHCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf             66327960888898566674333873211100777763688----61399549999878999310566989999999999


Q ss_pred             ECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCC
Q ss_conf             2165079999999953778886089999999999998789
Q gi|254780992|r  104 IGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK  143 (152)
Q Consensus       104 ~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~  143 (152)
                      ....--.|.|..++.     +   +.+..|.|.|+++|++
T Consensus       154 ~~gnk~~V~V~s~V~-----~---e~VF~G~F~~~~~~~~  185 (185)
T PRK04424        154 VTDNKYIVEVKSYVK-----D---ELVFKGKFIMYASSEE  185 (185)
T ss_pred             ECCCEEEEEEEEEEC-----C---EEEEEEEEEEEEECCC
T ss_conf             729999999999989-----9---9999999999991789


No 20 
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase; InterPro: IPR014166   The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert proton motive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism) ..
Probab=98.09  E-value=5e-05  Score=49.04  Aligned_cols=88  Identities=22%  Similarity=0.220  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHH-CCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEE
Q ss_conf             9999999999997-389832557520343214675738999999996216507999999995377888608999999999
Q gi|254780992|r   58 QIDIACGIRASQL-CKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVV  136 (152)
Q Consensus        58 ~~D~aa~~~A~~~-~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fT  136 (152)
                      |+=.+|.-- ... -.+-...+---.++|++|+++-|.|++.+++...++.|+.+.=+|+..   .++   +..++|.+.
T Consensus        34 wLR~lG~~Q-~l~~~~g~~FVVr~~~~dy~~PArlDD~L~V~t~~~~~~~Asl~f~Q~v~~~---Rg~---~~L~~A~V~  106 (127)
T TIGR02799        34 WLRALGFEQ-TLLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELKGASLVFAQEVRNK---RGD---TLLVEATVE  106 (127)
T ss_pred             HHHHCCCCC-HHHHCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCEEEEEEEEEEEC---CCC---EEEEEEEEE
T ss_conf             786357210-3575499499998987510587354861589999986447479999999967---898---888888799


Q ss_pred             EEEECC-CCCCCCCCCC
Q ss_conf             999878-9880227999
Q gi|254780992|r  137 MVAVDE-KGNPKSIRTE  152 (152)
Q Consensus       137 fVavDe-~g~P~pip~e  152 (152)
                      =++||. ++||+.+|.+
T Consensus       107 ~aCv~~~~~rP~~lP~~  123 (127)
T TIGR02799       107 VACVDASDMRPRRLPAE  123 (127)
T ss_pred             EEEEECCCCCCCCCCHH
T ss_conf             99972689897048978


No 21 
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.01  E-value=0.00033  Score=44.26  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=76.7

Q ss_pred             CCCHHEEEEECCC---CCCCEEEEEEEC------HHHCCCCCCEEHHH-HHHHHHHHHHHHHHHHCC----C-CCEEEEE
Q ss_conf             1610122333058---998348999848------33427478430899-999999999999999738----9-8325575
Q gi|254780992|r   16 ITKKEVLMVCQMH---SSGVLTLKIQTM------PTDVNLDGNVFGGW-IMSQIDIACGIRASQLCK----C-RVVTKAV   80 (152)
Q Consensus        16 ~~~~~~~~~~~~~---~~~~~~l~~~~~------P~~~N~~G~lfGG~-ll~~~D~aa~~~A~~~~~----~-~~vt~~i   80 (152)
                      .+|+-.+|.+++-   |....+-.-.+-      +.|--.+ -+.=|. +++-|-.+|+++.....+    + -....++
T Consensus        17 PhR~PfL~iD~i~~~~~g~~~~~~k~vs~nE~~f~GHFP~~-PimPGvLliEamaQ~~~~l~~~~~~~~~~~~~~~l~~i   95 (149)
T PRK00006         17 PHRYPFLLVDRVLELEPGKSIVAIKNVTINEPFFQGHFPGR-PVMPGVLIVEAMAQAGGVLAFKSLGKDAKGKLVYFAGI   95 (149)
T ss_pred             CCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf             99998699999999759988999996438977157758899-92864899999999999988333476779847999961


Q ss_pred             EEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECC
Q ss_conf             20343214675738999999996216507999999995377888608999999999999878
Q gi|254780992|r   81 TELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDE  142 (152)
Q Consensus        81 d~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe  142 (152)
                      +++.|++||.-||.|.+++++.+..+.......++++.      +  +.+++|.||++-+|+
T Consensus        96 ~~vkF~~~V~PGd~l~i~~~l~~~~~~~~~~~~~a~V~------g--~~v~~ae~~~~i~dk  149 (149)
T PRK00006         96 DKARFRRPVVPGDQLILEVEFLKKRRGIGKFKGVAKVD------G--KLVAEAELMFAIVDK  149 (149)
T ss_pred             EEEEECCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC------C--EEEEEEEEEEEEECC
T ss_conf             37898478799999999999999658999999999999------9--999999999999769


No 22 
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.77  E-value=0.00045  Score=43.48  Aligned_cols=83  Identities=18%  Similarity=0.326  Sum_probs=74.6

Q ss_pred             EEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEE
Q ss_conf             99848334274784308999999999999999997389832557520343214675738999999996216507999999
Q gi|254780992|r   36 KIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDV  115 (152)
Q Consensus        36 ~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V  115 (152)
                      ...+-|+.+|..|++--|.+-+.+-+++-..-.+..+++...-++. +.|++|+.+-+.|+++.++...||.+-.++|+.
T Consensus       336 t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~~niiIE~i~-iyflk~vqid~~l~I~prIl~~gR~~a~idvei  414 (432)
T COG4109         336 TVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKKRNIIIENIT-IYFLKPVQIDSVLEIYPRILEEGRKFAKIDVEI  414 (432)
T ss_pred             EEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE-EEEECCEECCCEEEEEEEEECCCCCCCEEEEEE
T ss_conf             8996664604445002788999999999999998507856878443-306522302448998410200154211467999


Q ss_pred             EEEC
Q ss_conf             9953
Q gi|254780992|r  116 WTCP  119 (152)
Q Consensus       116 ~~~~  119 (152)
                      |.+.
T Consensus       415 ~~~~  418 (432)
T COG4109         415 YHDG  418 (432)
T ss_pred             EECC
T ss_conf             6076


No 23 
>TIGR01750 fabZ beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; InterPro: IPR010084   Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes .   FabZ is the primary dehydratase involved in fatty-acid elongation in type II FAS. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. ; GO: 0016836 hydro-lyase activity, 0006633 fatty acid biosynthetic process, 0005737 cytoplasm.
Probab=97.62  E-value=0.001  Score=41.44  Aligned_cols=79  Identities=16%  Similarity=0.142  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCC------CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCC
Q ss_conf             899999999999999999738------98325575203432146757389999999962165079999999953778886
Q gi|254780992|r   52 GGWIMSQIDIACGIRASQLCK------CRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSD  125 (152)
Q Consensus        52 GG~ll~~~D~aa~~~A~~~~~------~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~  125 (152)
                      |=-+++-|-.+||+-+-..-+      .-+..+.||+..|++||--||.|.+++++...-++--.+..++.+.      +
T Consensus        57 GVLI~EAlAQaaGvl~~~~L~~~~~~g~~~~F~gid~akFr~pV~PGDqL~l~~e~~~~~~~i~k~~~~A~VD------G  130 (142)
T TIGR01750        57 GVLIVEALAQAAGVLAILSLGGKKGKGKLVYFAGIDKAKFRKPVVPGDQLILEVEFLKKRRKIGKFKGEAEVD------G  130 (142)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC------C
T ss_conf             0787888898888774205798778862899988627303566467822478788553412401578899889------9


Q ss_pred             EEEEEEEEEEEEE
Q ss_conf             0899999999999
Q gi|254780992|r  126 VLQKTCEATVVMV  138 (152)
Q Consensus       126 ~~~~v~~a~fTfV  138 (152)
                        +.+++|.++|.
T Consensus       131 --~vaAeaei~~a  141 (142)
T TIGR01750       131 --KVAAEAEITFA  141 (142)
T ss_pred             --EEEEEEEEEEE
T ss_conf             --89977888861


No 24 
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=97.60  E-value=0.0024  Score=39.23  Aligned_cols=82  Identities=16%  Similarity=0.220  Sum_probs=61.6

Q ss_pred             EEHHH-HHHHHHHHHHHHHHHHC---CC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCC
Q ss_conf             30899-99999999999999973---89-832557520343214675738999999996216507999999995377888
Q gi|254780992|r   50 VFGGW-IMSQIDIACGIRASQLC---KC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASS  124 (152)
Q Consensus        50 lfGG~-ll~~~D~aa~~~A~~~~---~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~  124 (152)
                      +.=|. +++-|-.+|++......   .+ .....+++++.|++||.-||.|++++++.+..+.......++++.      
T Consensus        44 vmPgvl~iEamaQ~~~~l~~~~~~~~~~~~~~l~~i~~~kF~~~V~PGd~l~i~~~~~~~~~~~~~~~~~~~v~------  117 (131)
T cd01288          44 IMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAYVD------  117 (131)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCCCCCCEEEEEEEEEEEECCEEEEEEEEEEC------
T ss_conf             47748999999999999971156778980899998148889478899999999999999769999999999999------


Q ss_pred             CEEEEEEEEEEEEEE
Q ss_conf             608999999999999
Q gi|254780992|r  125 DVLQKTCEATVVMVA  139 (152)
Q Consensus       125 ~~~~~v~~a~fTfVa  139 (152)
                      +  +.+++|.|+|+-
T Consensus       118 ~--~~v~~ae~~~~i  130 (131)
T cd01288         118 G--KLVAEAELMFAI  130 (131)
T ss_pred             C--EEEEEEEEEEEE
T ss_conf             9--999999999344


No 25 
>TIGR00051 TIGR00051 conserved hypothetical protein; InterPro: IPR006684 4-hydroxybenzoyl-CoA thioesterase (3.1.2.23 from EC) is an enzyme from Pseudomonas CBS-3, a soil-dwelling microbe that survives on 4-chlorobenzoate as its sole carbon source. This enzyme  catalyzes the last of the three steps in the pathway from 4-chlorobenzoate to hydroxybenzoate, the cleavage of the thioester bond of 4-hydroxybenzoyl-CoA to form hydroxybenzoate.  4-hydroxybenzoyl-CoA + H_2O = 4-hydroxybenzoate + CoA  4-hydroxybenzoyl-CoA thioesterase is a protein of 141 amino-acid residues that assemble as an homotetramer. An aspartate in the N-terminal domain is thought to participate in the catalytic mechanism. This enzyme is evolutionary related to a number of uncharacterised proteins.; GO: 0016787 hydrolase activity.
Probab=97.46  E-value=0.0007  Score=42.34  Aligned_cols=104  Identities=18%  Similarity=0.250  Sum_probs=75.8

Q ss_pred             CHHHCCCCCCEEHHHHHHHHHHHHHHHHH--H--H------C-CC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC
Q ss_conf             83342747843089999999999999999--9--7------3-89-8325575203432146757389999999962165
Q gi|254780992|r   40 MPTDVNLDGNVFGGWIMSQIDIACGIRAS--Q--L------C-KC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT  107 (152)
Q Consensus        40 ~P~~~N~~G~lfGG~ll~~~D~aa~~~A~--~--~------~-~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t  107 (152)
                      .=.|+-+.|.+|=-.-|+|+++|=+-.=.  -  |      . ++ ..+...+ .++|++|...||.|++++++...++.
T Consensus         5 ~y~dtDa~g~VyHA~YL~y~E~ARte~lr~~gi~F~q~~l~~~~~~~~vV~~~-~~~Y~~Pa~ldd~L~i~t~~~~l~g~   83 (121)
T TIGR00051         5 YYEDTDAQGIVYHANYLEYFERARTEFLRSLGIRFPQSVLEEEEGVAFVVVKI-NIEYKKPARLDDVLEIRTQIEELNGF   83 (121)
T ss_pred             EEEEECCCCEEEECCCEEEEEHHHHHHHHHCCCCCCHHHHHHHCCEEEEEEEE-EEEEECCCCCCCEEEEEEEEEECCCE
T ss_conf             68986798638802202533103356777369965757774608504899855-64210365348578998888750564


Q ss_pred             EEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCCCC
Q ss_conf             0799999999537788860899999999999987-898802279
Q gi|254780992|r  108 SVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKSIR  150 (152)
Q Consensus       108 Sm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~pip  150 (152)
                      |+....+++.....      .......++||.+| ++++|..+|
T Consensus        84 ~~~f~q~i~~~~~~------l~~~~~~~~fvC~d~~~~K~~a~~  121 (121)
T TIGR00051        84 SVVFSQEIFREDEA------LLKAATKIHFVCVDLKKFKPVALP  121 (121)
T ss_pred             EEEEEEEEECCCHH------EECCCEEEEEEEEECCCCCEEECC
T ss_conf             78999999806111------001455379999752437534439


No 26 
>KOG4781 consensus
Probab=97.39  E-value=0.0012  Score=40.94  Aligned_cols=88  Identities=19%  Similarity=0.203  Sum_probs=65.6

Q ss_pred             CCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEE
Q ss_conf             834899984833427478430899999999999999999738-9832557520343214675738999999996216507
Q gi|254780992|r   31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCK-CRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSV  109 (152)
Q Consensus        31 ~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~-~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm  109 (152)
                      ++++.-...-+.-.+.-|.+|||.|...+||+-++|+.-... ...+|+.. +++|..|++....+.+++....+-.+-.
T Consensus       125 ~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanL-sisy~~pip~~~f~vi~t~~~~~~Grk~  203 (237)
T KOG4781         125 REMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANL-SISYKRPIPTNHFVVIRTQLDKVEGRKC  203 (237)
T ss_pred             CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCEEEEC-CCCCCCCCCCCEEEEEECCHHHHCCCCC
T ss_conf             738999833500148877522179999999999986322577400023320-3346888633328998320233308622


Q ss_pred             EEEEEEEEEC
Q ss_conf             9999999953
Q gi|254780992|r  110 TIYCDVWTCP  119 (152)
Q Consensus       110 ~V~V~V~~~~  119 (152)
                      ..+.++....
T Consensus       204 ~~~g~l~~~~  213 (237)
T KOG4781         204 KTFGELNVQS  213 (237)
T ss_pred             CEEEEEEEEC
T ss_conf             1024788704


No 27 
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=97.14  E-value=0.012  Score=35.11  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=78.7

Q ss_pred             ECCCHHEEEEECCC---CCCCEEEE------EEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHC---CC-CCEEEEEE
Q ss_conf             11610122333058---99834899------98483342747843089999999999999999973---89-83255752
Q gi|254780992|r   15 IITKKEVLMVCQMH---SSGVLTLK------IQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLC---KC-RVVTKAVT   81 (152)
Q Consensus        15 ~~~~~~~~~~~~~~---~~~~~~l~------~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~---~~-~~vt~~id   81 (152)
                      +.+|+-.+|.+++.   |...++-.      ....+.|.-.+-.+=|=-+++-|..+|+++...-.   ++ .+...++|
T Consensus       330 lphR~Pfl~iD~v~~~~~~~~~~a~Knvt~nE~ff~GHFP~~pvmPGvl~iEamaQ~~~~l~l~~~~~~~~~~~y~~~i~  409 (465)
T PRK13188        330 LPHRYPFLLVDKIIEFKLDEKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNSVDNPENYSTYFMKID  409 (465)
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECC
T ss_conf             88989768999988506997899999357788221357899998971899999999988873204777788079999603


Q ss_pred             EEEEECCCCCCCEEEEEEEEEE-ECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCC
Q ss_conf             0343214675738999999996-2165079999999953778886089999999999998789
Q gi|254780992|r   82 ELLFEKPIQVSDLVHIYTQIRK-IGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK  143 (152)
Q Consensus        82 ~i~F~~Pv~~Gd~l~~~a~V~~-~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~  143 (152)
                      ++.|++||.-||.|.++.++.. ..+.--....++++.      +  +++|+|.|+|.-+|..
T Consensus       410 ~~kFr~~V~PGD~l~~~~~~l~~~k~~i~k~~g~a~V~------~--~~v~eae~~a~iv~~~  464 (465)
T PRK13188        410 KVKFRRPVVPGDTLIIEAELLTPIRRGICQMDGKAYVG------G--ELVCEAELMAQIVKKK  464 (465)
T ss_pred             CEEECCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEC------C--EEEEEEEEEEEEEECC
T ss_conf             11886886999899999999000479779999999999------9--9999999999998358


No 28 
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.  The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=97.06  E-value=0.023  Score=33.52  Aligned_cols=68  Identities=9%  Similarity=0.126  Sum_probs=48.8

Q ss_pred             CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             43089999999999999999973898325575203432146757389999999962165079999999953778
Q gi|254780992|r   49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNA  122 (152)
Q Consensus        49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~  122 (152)
                      .+||...+.|+..+..    .+.+........ ++.|.+|+..||.|++.++|+...... .+.+++|.++.+.
T Consensus        45 i~hG~l~~~~~~~~l~----~w~g~~~~l~~~-~~rf~~pv~~Gd~lt~~g~V~~~~~~~-~v~l~~~~~nq~G  112 (123)
T cd03455          45 YVNGPTLAGLVIRYVT----DWAGPDARVKSF-AFRLGAPLYAGDTLRFGGRVTAKRDDE-VVTVELWARNSEG  112 (123)
T ss_pred             EEEHHHHHHHHHHHHH----HHCCCCCEEEEE-EEEEECCEECCCEEEEEEEEEEECCCC-EEEEEEEEECCCC
T ss_conf             7737899999999999----764998459999-999767511899899999999976886-6999999998999


No 29 
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ.  FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis.  FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=97.00  E-value=0.026  Score=33.14  Aligned_cols=102  Identities=15%  Similarity=0.174  Sum_probs=71.3

Q ss_pred             CCCCEEEEEEECHHHCCCCCC-----EEHHH-HHHHHHHHHHHHHHHHCC------CCCEEEEEEEEEEECCCCCCCEEE
Q ss_conf             998348999848334274784-----30899-999999999999999738------983255752034321467573899
Q gi|254780992|r   29 SSGVLTLKIQTMPTDVNLDGN-----VFGGW-IMSQIDIACGIRASQLCK------CRVVTKAVTELLFEKPIQVSDLVH   96 (152)
Q Consensus        29 ~~~~~~l~~~~~P~~~N~~G~-----lfGG~-ll~~~D~aa~~~A~~~~~------~~~vt~~id~i~F~~Pv~~Gd~l~   96 (152)
                      |.+.+.-...+-|++--..|.     +.=|. ++++|-.++++.+.....      ......++++..|++|+.-||.|.
T Consensus        17 ~~~~~~~~k~v~~~~~ff~gHfp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~Pgd~l~   96 (131)
T cd00493          17 PGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLPGDTLT   96 (131)
T ss_pred             CCCEEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECEECCCCEEE
T ss_conf             99989999992799774772057999666037999999999999741133447788358999713889934047998999


Q ss_pred             EEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEE
Q ss_conf             999999621650799999999537788860899999999999
Q gi|254780992|r   97 IYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMV  138 (152)
Q Consensus        97 ~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfV  138 (152)
                      +++++...+.....+..+++..      +  +.++++.+++.
T Consensus        97 i~v~~~~~~~~~~~~~~~~~v~------~--~~v~~~~l~~~  130 (131)
T cd00493          97 LEVELLKVRRGLGKFDGRAYVD------G--KLVAEAELMAA  130 (131)
T ss_pred             EEEEEEEEECCEEEEEEEEEEC------C--EEEEEEEEEEE
T ss_conf             9999999889999999999999------9--99999999970


No 30 
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=96.75  E-value=0.041  Score=31.97  Aligned_cols=66  Identities=17%  Similarity=0.174  Sum_probs=53.0

Q ss_pred             CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEE
Q ss_conf             47843089999999999999999973898325575203432146757389999999962165079999999
Q gi|254780992|r   46 LDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVW  116 (152)
Q Consensus        46 ~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~  116 (152)
                      ....+|||+++.+.-.||...    .......-++. ..|..|...+.-+.++-+..+.||+..+..|+++
T Consensus        14 ~~r~~fGG~~~Aqa~~AA~~t----v~~~~~~~S~h-~~F~~~g~~~~pi~~~V~~lr~Grs~~tr~V~a~   79 (94)
T cd03445          14 QGRGVFGGQVLAQALVAAART----VPDDRVPHSLH-SYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAV   79 (94)
T ss_pred             CCCCCHHHHHHHHHHHHHHHH----CCCCCCCEEEE-EEEECCCCCCCCEEEEEEEEECCCCEEEEEEEEE
T ss_conf             765244279999999999953----89987635899-9980488899999999999867986798999999


No 31 
>TIGR02447 yiiD_Cterm thioesterase domain, putative; InterPro: IPR012660   This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from Shewanella oneidensis is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PF00583). The function of this protein is unknown. .
Probab=96.73  E-value=0.042  Score=31.96  Aligned_cols=101  Identities=19%  Similarity=0.279  Sum_probs=65.7

Q ss_pred             CCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHH-HH----CC-CCCEEEEEEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf             983489998483342747843089999999999999999-97----38-9832557520343214675738999999996
Q gi|254780992|r   30 SGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRAS-QL----CK-CRVVTKAVTELLFEKPIQVSDLVHIYTQIRK  103 (152)
Q Consensus        30 ~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~-~~----~~-~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~  103 (152)
                      +++++++-. .-...|+++|+|||-|...|--+||---+ +.    -+ +.+|.+. .+|.|..||. |+ ...++.+..
T Consensus        21 ~~~l~l~aP-L~~N~N~~~T~FgGSl~~~atL~gWGll~L~l~e~~~~~g~IVi~~-~~i~Y~~PV~-~~-~~A~c~~p~   96 (141)
T TIGR02447        21 GGELRLSAP-LAANLNHKGTMFGGSLYSLATLSGWGLLWLRLQELGIDDGDIVIAD-SQIRYLAPVT-GD-PVAECEVPD   96 (141)
T ss_pred             CCEEEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCCCCCCC-CC-CEEEEECCC
T ss_conf             878999802-2048885212037789999998766999999998178970499974-7102157857-67-235556565


Q ss_pred             E-------------CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEE
Q ss_conf             2-------------165079999999953778886089999999999998
Q gi|254780992|r  104 I-------------GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAV  140 (152)
Q Consensus       104 ~-------------G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVav  140 (152)
                      .             ||--+.+++++...    ++++  .+.+..=+||++
T Consensus        97 ~~~~~~fl~~l~~~gKAR~~l~a~i~~~----~~d~--~aa~F~G~yv~~  140 (141)
T TIGR02447        97 LESWEAFLATLQRGGKARVKLEAQISSD----GGDK--LAAKFSGEYVAL  140 (141)
T ss_pred             CCCCHHHHHHHHHCCCEEEEEEEEEEEC----CCCE--EEEEEEEEEEEE
T ss_conf             3360444568850587048999999746----8861--458861068864


No 32 
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2  has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.  The function of FkbR2 is unknown.
Probab=96.69  E-value=0.015  Score=34.62  Aligned_cols=42  Identities=17%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             CEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC-------EEEEEEEEE
Q ss_conf             325575203432146757389999999962165-------079999999
Q gi|254780992|r   75 VVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT-------SVTIYCDVW  116 (152)
Q Consensus        75 ~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t-------Sm~V~V~V~  116 (152)
                      ..-...+++.|.+||+.||.|.+.++|.....+       .+++..+++
T Consensus        78 ~a~lg~~~~rf~~PV~~GDtl~~~~eV~~~r~~~sr~~~Giv~~~~~~~  126 (146)
T cd03451          78 VANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGY  126 (146)
T ss_pred             EEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEE
T ss_conf             4657840359937776999999999999987458899857999999999


No 33 
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway.  (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.  The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer.  A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=96.62  E-value=0.049  Score=31.53  Aligned_cols=52  Identities=13%  Similarity=0.214  Sum_probs=34.6

Q ss_pred             EEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEE
Q ss_conf             203432146757389999999962165079999999953778886089999999999
Q gi|254780992|r   81 TELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVM  137 (152)
Q Consensus        81 d~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTf  137 (152)
                      .++.|.+|+..||.|++.++|+..-...-.+.++....+.   ++  +.+.++..+-
T Consensus        75 ~~~rF~~PV~~gDtl~~~~~V~~~~~~~~~v~~~~~~~nq---~g--~~V~~G~a~v  126 (128)
T cd03449          75 QSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQ---NG--EVVIEGEAVV  126 (128)
T ss_pred             EEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEC---CC--CEEEEEEEEE
T ss_conf             4799935679999999999999997899999999999968---99--9999989999


No 34 
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=96.41  E-value=0.042  Score=31.95  Aligned_cols=84  Identities=15%  Similarity=0.183  Sum_probs=62.6

Q ss_pred             CCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCE
Q ss_conf             78430899999999999999999738983255752034321467573899999999621650799999999537788860
Q gi|254780992|r   47 DGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDV  126 (152)
Q Consensus        47 ~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~  126 (152)
                      ...+|||.+..+.|.++...+.+..+......--..+.|+.|...++.+.++-+....|++.-...+++|-.     ++ 
T Consensus        14 ~~~~~~~~la~~sd~~~~~~~~~~~~~~~~~sld~~~~F~~~~~~~~w~~~~v~~~~~g~~~~~~~~~~~q~-----~G-   87 (99)
T cd00556          14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQR-----DG-   87 (99)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEEEECC-----CC-
T ss_conf             889999999999999998754332677877860145786589999988999998140207951899999948-----99-


Q ss_pred             EEEEEEEEEEE
Q ss_conf             89999999999
Q gi|254780992|r  127 LQKTCEATVVM  137 (152)
Q Consensus       127 ~~~v~~a~fTf  137 (152)
                       +++.++...|
T Consensus        88 -~lvas~~q~~   97 (99)
T cd00556          88 -KLVASATQSF   97 (99)
T ss_pred             -CEEEEEEEEE
T ss_conf             -7999998135


No 35 
>pfam01575 MaoC_dehydratas MaoC like domain. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase. The MaoC protein is found to share similarity with a wide variety of enzymes; estradiol 17 beta-dehydrogenase 4, peroxisomal hydratase-dehydrogenase-epimerase, fatty acid synthase beta subunit. Several bacterial proteins that are composed solely of this domain have (R)-specific enoyl-CoA hydratase activity. This domain is also present in the NodN nodulation protein N.
Probab=96.31  E-value=0.049  Score=31.53  Aligned_cols=64  Identities=9%  Similarity=-0.029  Sum_probs=39.2

Q ss_pred             CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEE
Q ss_conf             4308999999999999999997389832557520343214675738999999996216507999999
Q gi|254780992|r   49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDV  115 (152)
Q Consensus        49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V  115 (152)
                      .+||-+.++++..   +.+.....+...-...+++.|.+||+.||.|.++.+|+....+-..+.+++
T Consensus        52 iahG~~t~s~~~~---~~~~~~~~~~~~~~~~~~~rF~~PV~~GDtl~~~~ev~~~~~~k~~~~~~~  115 (123)
T pfam01575        52 IAHGMLTLAIARG---LVEEQGGDNVVARYGGWSVRFTGPVFPGDTLRTEVEVVGKRDGREIKVVET  115 (123)
T ss_pred             ECCCHHHHHHHHH---HHHHHCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEE
T ss_conf             2151779999999---988872777415555217787788788999999999999986877899999


No 36 
>cd03446 MaoC_like MoaC_like    Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=96.15  E-value=0.059  Score=31.09  Aligned_cols=54  Identities=17%  Similarity=0.146  Sum_probs=33.0

Q ss_pred             CEEHHHHHHHHHHHHHHHHHHHC-CCCCE--EEEEEEEEEECCCCCCCEEEEEEEEEEECC
Q ss_conf             43089999999999999999973-89832--557520343214675738999999996216
Q gi|254780992|r   49 NVFGGWIMSQIDIACGIRASQLC-KCRVV--TKAVTELLFEKPIQVSDLVHIYTQIRKIGK  106 (152)
Q Consensus        49 ~lfGG~ll~~~D~aa~~~A~~~~-~~~~v--t~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~  106 (152)
                      -+||...++++....   . +.. ....+  -...+++.|.+|+..||.|.++++|...-.
T Consensus        52 ia~G~~~~s~~~~l~---~-~~~~~~~~~~a~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~  108 (140)
T cd03446          52 IAHGLLTLSIATGLL---Q-RLGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEE  108 (140)
T ss_pred             CCCHHHHHHHHHHHH---H-CCCCCCCCEEEECCCEEEEECCCCCCCCEEEEEEEEEEEEE
T ss_conf             334478999998876---3-16777753365123104587488889999999999999541


No 37 
>cd03452 MaoC_C MaoC_C  The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.  MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=95.94  E-value=0.061  Score=30.98  Aligned_cols=68  Identities=13%  Similarity=0.174  Sum_probs=38.8

Q ss_pred             CCEEHHHHHHHHHHHHHHHHHHHC---CCC-CEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCE------EEEEEEEE
Q ss_conf             843089999999999999999973---898-3255752034321467573899999999621650------79999999
Q gi|254780992|r   48 GNVFGGWIMSQIDIACGIRASQLC---KCR-VVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTS------VTIYCDVW  116 (152)
Q Consensus        48 G~lfGG~ll~~~D~aa~~~A~~~~---~~~-~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tS------m~V~V~V~  116 (152)
                      ...|||.+..=+-.++. ++....   .+. .+...++++.|.+||+.||.|.++.+|...-.+|      +++..+++
T Consensus        45 ~s~fg~~ia~G~~~~~~-~~gl~~~~~~~~~~a~~g~~~lrf~~PV~~GDTi~~~~~V~e~~~~~~~~~Giv~~~~~~~  122 (142)
T cd03452          45 ASFFGKRVAHGYFVLSA-AAGLFVDPAPGPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVT  122 (142)
T ss_pred             HCCCCCCCCCHHHHHHH-HHHHEEECCCCCEEEECCCCEEEECCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEE
T ss_conf             28899814146899999-8754851788745772344256970898999999999999998516789967999999999


No 38 
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit.  Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=95.91  E-value=0.13  Score=29.12  Aligned_cols=65  Identities=6%  Similarity=-0.034  Sum_probs=40.1

Q ss_pred             CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEE
Q ss_conf             43089999999999999999973898325575203432146757389999999962165079999999
Q gi|254780992|r   49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVW  116 (152)
Q Consensus        49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~  116 (152)
                      .+||=+++.++-.   +.......+...-..--...|.+||..||.|+++.+++..-+....+.++++
T Consensus        44 I~HGm~~~a~~~~---~l~~~~~~g~~~~~~~~~~rF~~pV~~GD~lt~~v~v~~~~~~~~~v~~~~~  108 (126)
T cd03447          44 ITHGMYTSAAVRA---LVETWAADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEAR  108 (126)
T ss_pred             CHHHHHHHHHHHH---HHHHHCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCEEEEEEEE
T ss_conf             6247679999999---9997437999638999987981032599999999999999789179999999


No 39 
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=95.86  E-value=0.13  Score=28.98  Aligned_cols=119  Identities=12%  Similarity=0.121  Sum_probs=73.1

Q ss_pred             CCCHHEEEEECCCC---CC-CEEEEEEECHHHC-----CCCCCEEHHHHH-HHHHHHHHHHHHHHCC--C-CCEEEEEEE
Q ss_conf             16101223330589---98-3489998483342-----747843089999-9999999999999738--9-832557520
Q gi|254780992|r   16 ITKKEVLMVCQMHS---SG-VLTLKIQTMPTDV-----NLDGNVFGGWIM-SQIDIACGIRASQLCK--C-RVVTKAVTE   82 (152)
Q Consensus        16 ~~~~~~~~~~~~~~---~~-~~~l~~~~~P~~~-----N~~G~lfGG~ll-~~~D~aa~~~A~~~~~--~-~~vt~~id~   82 (152)
                      .+++-.+|.+|+..   ++ .+...--+-|.+-     .+..-++.|.|+ .+|-.+++..+.+...  + .....++|+
T Consensus        14 phryPfLmvDrv~~~~~~g~~i~a~k~Vt~nepfF~gHFP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~   93 (147)
T COG0764          14 PHRYPFLLVDRVLEIDEEGKRIVAIKNVTINEPFFTGHFPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDN   93 (147)
T ss_pred             CCCCCHHHEEEEEEECCCCCEEEEEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf             31378120001555406995899997558888871795999997653699999999999998334367861799998513


Q ss_pred             EEEECCCCCCCEEEEEEEEEEECCCEEEEEE-EEEEECCCCCCCEEEEEEEEEEEEEEECC
Q ss_conf             3432146757389999999962165079999-99995377888608999999999999878
Q gi|254780992|r   83 LLFEKPIQVSDLVHIYTQIRKIGKTSVTIYC-DVWTCPRNASSDVLQKTCEATVVMVAVDE  142 (152)
Q Consensus        83 i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V-~V~~~~~~~~~~~~~~v~~a~fTfVavDe  142 (152)
                      ..|++||.-||.+.++.++...++..+...- ++.    .  ++  +.+++|.+.++-++.
T Consensus        94 ~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~----V--dg--~~v~~a~~~~~~~~~  146 (147)
T COG0764          94 AKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVAT----V--DG--KVVAEAELLFAGVEK  146 (147)
T ss_pred             EEECCCCCCCCEEEEEEEEEEECCCCEEEEEEEEE----E--CC--EEEEEEEEEEEEEEC
T ss_conf             33537659998799999998723224489878999----8--99--999988779998506


No 40 
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=95.82  E-value=0.14  Score=28.89  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=52.4

Q ss_pred             CCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEE
Q ss_conf             7843089999999999999999973898325575203432146757389999999962165079999999
Q gi|254780992|r   47 DGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVW  116 (152)
Q Consensus        47 ~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~  116 (152)
                      .+.+|||+++.+.-.||..+    .......-++.. .|++|...+.-|..+-+.++-|||-.+=.|+++
T Consensus        31 ~~~vfGGqv~AQAL~AA~~T----v~~~~~~hSlH~-YFlr~G~~~~Pi~y~Ve~lrdGrSF~tR~V~A~   95 (286)
T PRK10526         31 LRQVFGGQVVGQALYAAKET----VPEERLVHSFHS-YFLRPGDSKKPIIYDVETLRDGNSFSARRVAAI   95 (286)
T ss_pred             CCCEECHHHHHHHHHHHHHH----CCCCCCCEEEEE-ECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEE
T ss_conf             98447069999999999953----799987146666-516888999998999788745986470268999


No 41 
>cd03453 SAV4209_like SAV4209_like.  Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=95.82  E-value=0.14  Score=28.88  Aligned_cols=65  Identities=14%  Similarity=0.122  Sum_probs=40.1

Q ss_pred             CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEE----CCCEEEEEEEEEEECC
Q ss_conf             43089999999999999999973898325575203432146757389999999962----1650799999999537
Q gi|254780992|r   49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKI----GKTSVTIYCDVWTCPR  120 (152)
Q Consensus        49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~----G~tSm~V~V~V~~~~~  120 (152)
                      .+||-+.+.|+..+.    ..+.+........ ++.|.+|++.||.|++.++|+..    |+..  +.+++++.+.
T Consensus        46 iahG~~~~a~~~~~~----~~~~g~~~~~~~~-~~rF~~pV~~Gdtl~~~~~V~~k~~~~~~~~--v~~~v~v~nq  114 (127)
T cd03453          46 IAHGMLTMGLLGRLV----TDWVGDPGRVVSF-GVRFTKPVPVPDTLTCTGIVVEKTVADGEDA--LTVTVDATDQ  114 (127)
T ss_pred             EECHHHHHHHHHHHH----HHHCCCCEEEEEE-ECEEECCCCCCCEEEEEEEEEEEEECCCCCE--EEEEEEEEEC
T ss_conf             080888899999987----6315997499992-0549486018999999999999898289978--9999999999


No 42 
>pfam01643 Acyl-ACP_TE Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.
Probab=95.75  E-value=0.15  Score=28.70  Aligned_cols=109  Identities=17%  Similarity=0.132  Sum_probs=80.0

Q ss_pred             EEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCC---------CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC
Q ss_conf             984833427478430899999999999999999738---------98325575203432146757389999999962165
Q gi|254780992|r   37 IQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCK---------CRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT  107 (152)
Q Consensus        37 ~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~---------~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t  107 (152)
                      ..+.-.++...|.+.=..|+.|+-++|+.-+....-         +..=.++=-.+.+.++.+.||.|++..+.....+-
T Consensus         8 ~~V~~~e~d~~g~l~l~~l~n~lqd~A~~hs~~lG~g~~~~l~~~~~~WVl~r~~i~i~r~P~~~e~i~v~Tw~~~~~~~   87 (247)
T pfam01643         8 FEIRYYEIDVNGTASIETLMNHLQEVALNQSESLGLSGDGFMEKRNLIWVVTRYEIEIDRYPAWGDVVEIETWVSSYGKF   87 (247)
T ss_pred             EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEEEEEEEECCCCCCEEEEEEEECCCCCC
T ss_conf             98857822899979999999999999999999839974788974794999999999997778889989999987226897


Q ss_pred             EEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCCCCCC
Q ss_conf             0799999999537788860899999999999987-89880227999
Q gi|254780992|r  108 SVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKSIRTE  152 (152)
Q Consensus       108 Sm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~pip~e  152 (152)
                      ...=.-.++    + .+++  .+..|.=+++-+| +..||..+|+|
T Consensus        88 ~~~R~f~i~----d-~~G~--~i~~a~S~Wvlid~~tRrp~ri~~e  126 (247)
T pfam01643        88 GCYRDFLVY----D-ETGE--KLIRATSVWVLMNQDTRRLSKIPDE  126 (247)
T ss_pred             EEEEEEEEE----C-CCCC--EEEEEEEEEEEEECCCCCCCCCCHH
T ss_conf             799989999----7-9999--9999999999999465954269978


No 43 
>COG5496 Predicted thioesterase [General function prediction only]
Probab=95.18  E-value=0.24  Score=27.55  Aligned_cols=86  Identities=13%  Similarity=-0.029  Sum_probs=67.8

Q ss_pred             CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-EEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEE
Q ss_conf             430899999999999999999738983255752-0343214675738999999996216507999999995377888608
Q gi|254780992|r   49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVT-ELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVL  127 (152)
Q Consensus        49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id-~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~  127 (152)
                      -+=-++|..||..++.-++.++-.....++..+ .+.-.+|++.|+.+.+.+++..+-..-..+.+++.    +.+    
T Consensus        30 VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~----~~~----  101 (130)
T COG5496          30 VLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAM----EGG----  101 (130)
T ss_pred             EEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEEEEECCEEEEEEEEE----ECC----
T ss_conf             230299999999999999875276776305589886441478999759999999998563889999993----088----


Q ss_pred             EEEEEEEEEEEEECC
Q ss_conf             999999999999878
Q gi|254780992|r  128 QKTCEATVVMVAVDE  142 (152)
Q Consensus       128 ~~v~~a~fTfVavDe  142 (152)
                      .++.++.+|=+-+|.
T Consensus       102 ~~Ig~g~h~R~iv~~  116 (130)
T COG5496         102 DKIGEGTHTRVIVPR  116 (130)
T ss_pred             CEEEEEEEEEEEECH
T ss_conf             587145799998569


No 44 
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase].  Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway.  The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold.  The active site lies within a substrate-binding tunnel formed by the homodimer.  Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE),  and the fatty acid synthase beta subunit.
Probab=95.15  E-value=0.24  Score=27.49  Aligned_cols=65  Identities=12%  Similarity=0.031  Sum_probs=42.7

Q ss_pred             CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCC----EEEEEEEEE
Q ss_conf             43089999999999999999973898325575203432146757389999999962165----079999999
Q gi|254780992|r   49 NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKT----SVTIYCDVW  116 (152)
Q Consensus        49 ~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~t----Sm~V~V~V~  116 (152)
                      -+||.+++.++-.+..   ..............++.|.+|++.||.|++.++|.....+    .+++.+.+.
T Consensus        44 ia~G~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~v~~~~~~~  112 (127)
T cd03441          44 IAHGMLTLSLASGLLV---QWLPGTDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEAR  112 (127)
T ss_pred             EECCHHHHHHHHHHHH---HHCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEE
T ss_conf             3155449999999998---87066551356564886504679999999999999999759970999999999


No 45 
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function.  YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase.   Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=95.00  E-value=0.23  Score=27.58  Aligned_cols=31  Identities=13%  Similarity=0.274  Sum_probs=26.0

Q ss_pred             CEEEEEEEEEEECCCCCCCEEEEEEEEEEEC
Q ss_conf             3255752034321467573899999999621
Q gi|254780992|r   75 VVTKAVTELLFEKPIQVSDLVHIYTQIRKIG  105 (152)
Q Consensus        75 ~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G  105 (152)
                      .....++++.|.+||+.||.|.++.+|....
T Consensus        75 ~a~~g~~~~rf~~PV~~GDTi~~~~eV~~~~  105 (140)
T cd03454          75 GGSPGIDELRWPRPVRPGDTLSVEVEVLDKR  105 (140)
T ss_pred             EEECCCCEEEECCCCCCCCEEEEEEEEEEEE
T ss_conf             1242521258837876899999999999936


No 46 
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=94.82  E-value=0.2  Score=27.95  Aligned_cols=56  Identities=16%  Similarity=0.052  Sum_probs=37.6

Q ss_pred             EEHHHHHHHHHHHHHHHHH--HHCCCC--CEEEEEEEEEEECCCCCCCEEEEEEEEEEEC
Q ss_conf             3089999999999999999--973898--3255752034321467573899999999621
Q gi|254780992|r   50 VFGGWIMSQIDIACGIRAS--QLCKCR--VVTKAVTELLFEKPIQVSDLVHIYTQIRKIG  105 (152)
Q Consensus        50 lfGG~ll~~~D~aa~~~A~--~~~~~~--~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G  105 (152)
                      .|||.+..=+-.++...+.  ......  ..-...+.+.|.+||+.||.|..+.++....
T Consensus        64 ~fg~~iahG~~t~a~~~~~~~~~~~~~~~~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~  123 (159)
T COG2030          64 GFGGPIAHGMLTLALAMGLVVAALGDPSVGANLGGDEVRFVKPVFPGDTLRARVEVLDKR  123 (159)
T ss_pred             CCCCEEECHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEEC
T ss_conf             799885054589999999998741467404431577779707877999999999996401


No 47 
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=94.26  E-value=0.41  Score=26.17  Aligned_cols=87  Identities=18%  Similarity=0.234  Sum_probs=51.7

Q ss_pred             CEEHHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEC--CCEEEEEEEEEEECCCCC
Q ss_conf             4308999999999999999---99738983255752034321467573899999999621--650799999999537788
Q gi|254780992|r   49 NVFGGWIMSQIDIACGIRA---SQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIG--KTSVTIYCDVWTCPRNAS  123 (152)
Q Consensus        49 ~lfGG~ll~~~D~aa~~~A---~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G--~tSm~V~V~V~~~~~~~~  123 (152)
                      +.|++.+.-=|-.++.+.|   .++.+...+-.+ -++.|.+|+++||.|+++.+|...-  +..+++.+.+.  +   .
T Consensus        54 t~F~~~IaHGm~~asLiSavLGt~LPGpGTiYl~-Q~L~F~~PV~iGDtvtatVtV~ek~~~k~~V~L~~~~~--n---q  127 (465)
T PRK08190         54 DGFHHVVAHGMWGGALISAVLGTRLPGPGTIYLS-QSLRFRRPVRIGDTITVTVTVREKRPEKRIVLLDCRCT--N---Q  127 (465)
T ss_pred             CCCCCCEEHHHHHHHHHHHHHHCCCCCCCEEEEE-EEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEE--C---C
T ss_conf             7888714307778999999974658999758765-14676678889998999999999717889899997999--0---6


Q ss_pred             CCEEEEEEEEEEEEEEECCC
Q ss_conf             86089999999999998789
Q gi|254780992|r  124 SDVLQKTCEATVVMVAVDEK  143 (152)
Q Consensus       124 ~~~~~~v~~a~fTfVavDe~  143 (152)
                      ++  +.+.+|.-+-.+=.+.
T Consensus       128 ~G--~~Vi~G~A~V~APt~k  145 (465)
T PRK08190        128 DG--EVVISGTAEVIAPTEK  145 (465)
T ss_pred             CC--CEEEEEEEEEECCCCC
T ss_conf             99--7999857999888544


No 48 
>KOG3016 consensus
Probab=94.13  E-value=0.43  Score=26.02  Aligned_cols=90  Identities=12%  Similarity=0.063  Sum_probs=64.6

Q ss_pred             EEEECHHHC-CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEE
Q ss_conf             998483342-7478430899999999999999999738983255752034321467573899999999621650799999
Q gi|254780992|r   36 KIQTMPTDV-NLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCD  114 (152)
Q Consensus        36 ~~~~~P~~~-N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~  114 (152)
                      +....+.-. ++++.+|||++.++.-.||.-.    .....+.-++. ..|.+.+..-.-+...-+-++-|++-.+-.|+
T Consensus        25 ~~~~l~~g~~~~~~~~fGG~i~sQaLaAA~~T----V~e~f~p~SlH-~YFI~~gd~~~pI~Y~V~rirdGr~F~~R~V~   99 (294)
T KOG3016          25 LTRHLPKGREIPSNHAYGGQIASQALAAASKT----VEEMFIPHSLH-CYFILVGDPNIPIIYDVKRIRDGRNFATRSVD   99 (294)
T ss_pred             ECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHC----CCCCCCCCEEE-EEEEECCCCCCCEEEEEEEECCCCEEEEEEEE
T ss_conf             11457645547887530414459999998702----66352522455-34321588788569883661278605899988


Q ss_pred             EEEECCCCCCCEEEEEEEEEEEEE
Q ss_conf             999537788860899999999999
Q gi|254780992|r  115 VWTCPRNASSDVLQKTCEATVVMV  138 (152)
Q Consensus       115 V~~~~~~~~~~~~~~v~~a~fTfV  138 (152)
                      ++-      .+  +.+..+.+.|=
T Consensus       100 AvQ------~~--k~If~~qiSF~  115 (294)
T KOG3016         100 AVQ------KG--KTIFTLQISFQ  115 (294)
T ss_pred             EEE------CC--EEEEEEEEEEC
T ss_conf             788------78--28999999972


No 49 
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.84  E-value=0.41  Score=26.12  Aligned_cols=112  Identities=12%  Similarity=0.129  Sum_probs=78.5

Q ss_pred             CEEEEEEECHHHCCCCCCEE--------HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf             34899984833427478430--------8999999999999999997389832557520343214675738999999996
Q gi|254780992|r   32 VLTLKIQTMPTDVNLDGNVF--------GGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRK  103 (152)
Q Consensus        32 ~~~l~~~~~P~~~N~~G~lf--------GG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~  103 (152)
                      -.+.+..+-|+=.-.+|.+-        +=..=.+|+..|.-.+++-++....|+- ..|.|++-++.|+.+.++.++..
T Consensus       339 ~~~~~~~vp~eWiDYNGHMnea~Y~~~F~~AtD~~~~~iG~d~~Y~~~g~S~fTvE-~Hiryl~Ev~~G~~i~v~t~ll~  417 (489)
T PRK07531        339 LRLVERKVPPAWVDYNGHMTEHRYLQVFGDTTDALLEHIGVDAAYIAAGHSYYTVE-THIRHLGEAKAGQALHVETQLLG  417 (489)
T ss_pred             CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEE-EEEHHHHHCCCCCEEEEEEEEEE
T ss_conf             37762254853031477523899999999999999998099999995489779885-22216665069984999999982


Q ss_pred             ECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCCCCC
Q ss_conf             21650799999999537788860899999999999987-8988022799
Q gi|254780992|r  104 IGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKSIRT  151 (152)
Q Consensus       104 ~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~pip~  151 (152)
                      ....-+.++-+.+.     +++  .++.++..-...|| +.+|..|.|.
T Consensus       418 ~d~Krlhl~h~m~~-----~dg--~l~AT~E~mllHVDl~~rrs~p~~~  459 (489)
T PRK07531        418 GDEKRLHLFHTLYD-----GDG--TLIATGEHMLLHVDLKTGKAVPAPA  459 (489)
T ss_pred             CCCEEEEEEEEEEC-----CCC--CEEHHHHHHHEEEECCCCCCCCCCH
T ss_conf             47616999999984-----898--4868750344067379987899999


No 50 
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=93.68  E-value=0.4  Score=26.20  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             ECHHHCCCCC-CEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEE
Q ss_conf             4833427478-430899999999999999999738983255752034321467573899999999621650799999999
Q gi|254780992|r   39 TMPTDVNLDG-NVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWT  117 (152)
Q Consensus        39 ~~P~~~N~~G-~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~  117 (152)
                      .-.+..+..+ .+|||+++.+.-.    +|.+.....-+.-++.. .|++|...-.-+.+..+..+-|++--+..|.++-
T Consensus        22 frG~s~~~g~~~vFGGqvvaQAL~----Aa~~TV~~~r~vhS~h~-yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~aiQ   96 (289)
T COG1946          22 FRGSSPDSGLRRVFGGQVVAQALV----AALRTVPEDRVVHSLHS-YFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAIQ   96 (289)
T ss_pred             EECCCCCCCCCCCCCCCHHHHHHH----HHHHHCCCCCCCCEEHH-HHCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEE
T ss_conf             434787868740255124999999----99841687777643426-4448998678669998862589735767999998


Q ss_pred             ECCCCCCCEEEEEEEEEEEEEE
Q ss_conf             5377888608999999999999
Q gi|254780992|r  118 CPRNASSDVLQKTCEATVVMVA  139 (152)
Q Consensus       118 ~~~~~~~~~~~~v~~a~fTfVa  139 (152)
                            .+  +.++++...|-.
T Consensus        97 ------~g--~~If~~~ASF~~  110 (289)
T COG1946          97 ------HG--KLIFSATASFQV  110 (289)
T ss_pred             ------CC--EEEEEEEEECCC
T ss_conf             ------99--999998700067


No 51 
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=92.52  E-value=0.79  Score=24.48  Aligned_cols=61  Identities=15%  Similarity=0.226  Sum_probs=43.9

Q ss_pred             EEEEEECCCCCCCEEEEEEEEEEE----CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCCCC
Q ss_conf             203432146757389999999962----1650799999999537788860899999999999987-8988022
Q gi|254780992|r   81 TELLFEKPIQVSDLVHIYTQIRKI----GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNPKS  148 (152)
Q Consensus        81 d~i~F~~Pv~~Gd~l~~~a~V~~~----G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P~p  148 (152)
                      -...|++|+..||.|.+...|..+    |+.-+++.-++.     ...+  +++.+++=|.|+-. +++....
T Consensus        89 Q~F~yhRPI~AGD~L~~~~~v~svr~~~G~diittr~~vt-----d~~G--e~V~t~~tTLv~R~gd~~~~~~  154 (166)
T PRK13691         89 QRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCT-----NDDG--EVVMEAYTTLMGQQGDNSASLK  154 (166)
T ss_pred             CEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEE-----CCCC--CEEEEEEEEEEEECCCCCCCEE
T ss_conf             0699988701699999999999831008931899988998-----8999--9999999999986377642010


No 52 
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.  Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division.  The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=92.20  E-value=0.86  Score=24.25  Aligned_cols=69  Identities=13%  Similarity=0.060  Sum_probs=40.4

Q ss_pred             EEHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEECC---CEEEEEEEEEEEC
Q ss_conf             308999999999999999997389-832557520343214675738999999996216---5079999999953
Q gi|254780992|r   50 VFGGWIMSQIDIACGIRASQLCKC-RVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGK---TSVTIYCDVWTCP  119 (152)
Q Consensus        50 lfGG~ll~~~D~aa~~~A~~~~~~-~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~---tSm~V~V~V~~~~  119 (152)
                      .||=..++++-....-+. ...+. ..+-...|++.|.+||++||.|+.+.++..+-.   ..+.+..++..+.
T Consensus        59 AHGfltLSl~~~~~~~~~-~~~~~~~~vNYG~dkvRF~~PV~vGs~vR~~~~l~~v~~~~~g~~~~~~~~tvEi  131 (149)
T cd03450          59 AHGFLTLSLLPALTPQLF-RVEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEI  131 (149)
T ss_pred             CCHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCEEECCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEE
T ss_conf             650669999998875266-7678433330033526706875679999999999998991898499999999999


No 53 
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=90.09  E-value=1.4  Score=23.01  Aligned_cols=64  Identities=13%  Similarity=0.177  Sum_probs=41.7

Q ss_pred             CEEE--EEEEEEEECCCCCCCEEEEEEEEEEEC-CCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEE
Q ss_conf             3255--752034321467573899999999621-6507999999995377888608999999999999
Q gi|254780992|r   75 VVTK--AVTELLFEKPIQVSDLVHIYTQIRKIG-KTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVA  139 (152)
Q Consensus        75 ~vt~--~id~i~F~~Pv~~Gd~l~~~a~V~~~G-~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVa  139 (152)
                      +|.+  .+|+..|.+||..||.|.++-.+...- |..-...+-.|......++++. ...--.+|||+
T Consensus       609 pvlan~g~~~lrf~~pv~~gd~i~v~lt~k~k~~r~~~~~g~v~w~~~v~nq~~~~-va~y~~lt~v~  675 (676)
T PRK11563        609 PVLANYGLDNLRFIEPVKPGDTIQVRLTCKRKTPRNQKSYGEVRWDVEVTNQHGEP-VATYDILTLVA  675 (676)
T ss_pred             CEEECCCCCEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCE-EEEEEEEEEEC
T ss_conf             66501274305861566899779999999980367789873699999998589987-89986540024


No 54 
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=89.92  E-value=1.5  Score=22.92  Aligned_cols=60  Identities=20%  Similarity=0.203  Sum_probs=42.0

Q ss_pred             EEEEEEECCCCCCCEEEEEEEEEEE----CCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEC-CCCCC
Q ss_conf             5203432146757389999999962----1650799999999537788860899999999999987-89880
Q gi|254780992|r   80 VTELLFEKPIQVSDLVHIYTQIRKI----GKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVD-EKGNP  146 (152)
Q Consensus        80 id~i~F~~Pv~~Gd~l~~~a~V~~~----G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavD-e~g~P  146 (152)
                      =-...|++|+..||.|.+...|..+    |+.-++...+++     ...+  +++.++.-|.|.-. +++.|
T Consensus        88 eQ~f~yhrPi~AGD~Lt~~~~I~~ir~~~G~d~v~~~~~vt-----~~~G--e~V~t~~sTLv~R~~~~~~~  152 (159)
T PRK13692         88 DQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVT-----NEAG--DVVQETYTTLAGRAGEDGEE  152 (159)
T ss_pred             CCEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEE-----CCCC--CEEEEEEEEEEEECCCCCCC
T ss_conf             72489989824898999999999865339916999999999-----8999--99999999999976777886


No 55 
>cd03448 HDE_HSD HDE_HSD  The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins.  Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=86.35  E-value=2.5  Score=21.57  Aligned_cols=44  Identities=11%  Similarity=0.111  Sum_probs=28.2

Q ss_pred             HHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEE
Q ss_conf             97389832557520343214675738999999996216507999999
Q gi|254780992|r   69 QLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDV  115 (152)
Q Consensus        69 ~~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V  115 (152)
                      .++.+...-..--...|.+||..||.|.+..|.  .|+ .+.+.+++
T Consensus        63 ~~~~g~~~~~~~~~~rF~~pV~pGd~l~v~iw~--~~~-~v~~~~~~  106 (122)
T cd03448          63 AFADGDPARFKAIKVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKV  106 (122)
T ss_pred             HHCCCCCEEEEEEEEEECCCCCCCCEEEEEEEE--ECC-EEEEEEEE
T ss_conf             675899603899998982653699989999999--799-99999999


No 56 
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=85.38  E-value=2.8  Score=21.28  Aligned_cols=49  Identities=6%  Similarity=0.052  Sum_probs=30.8

Q ss_pred             HHCCCCCEEEEEEEEEEECCCCC-----CCEEEEEEEEEEECCCEEEEEEEEEEE
Q ss_conf             97389832557520343214675-----738999999996216507999999995
Q gi|254780992|r   69 QLCKCRVVTKAVTELLFEKPIQV-----SDLVHIYTQIRKIGKTSVTIYCDVWTC  118 (152)
Q Consensus        69 ~~~~~~~vt~~id~i~F~~Pv~~-----Gd~l~~~a~V~~~G~tSm~V~V~V~~~  118 (152)
                      .+.++.-..... .+.|.+|+++     |+.+++.++|...-...-++.+...+.
T Consensus        72 ~w~g~pg~v~~~-~vrF~~pv~vp~~~~G~~v~~tg~V~~~d~~~~~v~l~l~~~  125 (142)
T PRK13693         72 SWVGDPGAVTEY-NVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTAT  125 (142)
T ss_pred             HHCCCCCEEEEE-EEEECCEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEEEEE
T ss_conf             745998558999-989753388169898759999999999717788899999999


No 57 
>pfam07977 FabA FabA-like domain. This enzyme domain has a HotDog fold.
Probab=81.86  E-value=3.9  Score=20.41  Aligned_cols=67  Identities=13%  Similarity=0.121  Sum_probs=42.5

Q ss_pred             EHHHH-HHHHHHHHHHHHHHHC---CCCCEEEEEEEEEEECCCCCCC-EEEEEEEEEEECC---CEEEEEEEEEE
Q ss_conf             08999-9999999999999973---8983255752034321467573-8999999996216---50799999999
Q gi|254780992|r   51 FGGWI-MSQIDIACGIRASQLC---KCRVVTKAVTELLFEKPIQVSD-LVHIYTQIRKIGK---TSVTIYCDVWT  117 (152)
Q Consensus        51 fGG~l-l~~~D~aa~~~A~~~~---~~~~vt~~id~i~F~~Pv~~Gd-~l~~~a~V~~~G~---tSm~V~V~V~~  117 (152)
                      .=|.| ++-|-.++++.+....   .......+++++.|+++|.-|| .|.++.++.+++.   .......++++
T Consensus        50 mPGvL~iEa~aQ~~~~~~~~~~~~~~~~~~~~~i~~~kFr~~V~PGD~~l~~ev~i~~i~~~~~~~~~~~g~a~V  124 (133)
T pfam07977        50 MPGVLGLEAMAQLGGFYLLWLGGGEGKGRARFGIDEVKFRGQVTPGDKQLRYEVEIKRIGPRRGVIGIADGRALV  124 (133)
T ss_pred             CCCHHHHHHHHHHHHHHHECCCCCCCCCCEECCCEEEEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf             883779999999999984505678885101045227899247659994999999999986168749999999999


No 58 
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN; InterPro: IPR011966    This enzyme is proposed to act in the ring-opening step of phenylacetic acid degradation  which follows ligation of the acid with coenzyme A (by PaaF) and hydroxylation by a multicomponent non-heme iron hydroxylase complex (PaaGHIJK). Gene symbols have been standardised in . This enzyme is related to aldehyde dehydrogenases..
Probab=57.88  E-value=14  Score=17.13  Aligned_cols=50  Identities=16%  Similarity=0.283  Sum_probs=33.1

Q ss_pred             EEHHHHHHHHHHHHHHHHHHHCCCCCEEEE--EEEEEEECCCCCCCEEEEEEEEEEE
Q ss_conf             308999999999999999997389832557--5203432146757389999999962
Q gi|254780992|r   50 VFGGWIMSQIDIACGIRASQLCKCRVVTKA--VTELLFEKPIQVSDLVHIYTQIRKI  104 (152)
Q Consensus        50 lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~--id~i~F~~Pv~~Gd~l~~~a~V~~~  104 (152)
                      .||=.+++|.   ||+-.-  +..-+|.+.  .+++.|+.||.-||.|.++=.|.+.
T Consensus       598 aHGYlvlS~A---AGLFVd--p~pGPvLANYGLe~LRFl~PV~~dDsi~V~LT~Krk  649 (690)
T TIGR02278       598 AHGYLVLSAA---AGLFVD--PAPGPVLANYGLENLRFLEPVKPDDSIQVRLTVKRK  649 (690)
T ss_pred             HHHHHHHHHH---HCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEEEC
T ss_conf             2688899998---605326--889854731367766303567998845899842203


No 59 
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit; InterPro: IPR012780   Carbon monoxide dehydrogenases catalyse the reversible oxidation of carbon monoxide to carbon dioxide as shown below , : CO + H(2)O + A == CO(2) + AH(2) A variety of electron acceptors can be used by these enzymes including ferredoxin, methyl viologen and benzyl viologen. Under anaerobic conditions, carbon monoxide is utilised by a number of methanogenic archaea and acetogenic, sulphate-reducing or phototrophic bacteria. Under aerobic conditions carbon monoxide can be used as sole carbon and energy source by the carboxidotrophic bacteria, a taxonomically diverse group of obligate or facultative chemolithoautotrophic species. The anaerobic dehydrogenases are mostly nickel-containing iron-sulphur enzymes, while the The aerobic enzymes categorised so far are molybdenum-containing iron-sulphur proteins.   This entry represents the large subunit of the molybdenum-containing carbon monoxide dehydrogenase found in aerobic bacteria. This enzyme is a dimer of heterotrimers, where each heterotrimer consists of a small iron-sulphur subunit, a medium FAD-containing flavoprotein subunit and a large molybdopterin-containign subunit which contains the active site , . The large subunit is divided into two domains. The N-terminal domain is composed of mainly of a five-and four-stranded mixed beta-sheet and interacts with the small and medium subunits. The C-terminal domain contains a region which interacts with its counterpart in the overall dimer, providing the main dimer contact, and a beta-sheet surrounded by alpha helices. The active site located in this subunit contains a novel dinuclear heterometal [CuSMo(=O)OH] cluster.; GO: 0005507 copper ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0030151 molybdenum ion binding.
Probab=53.03  E-value=11  Score=17.70  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=30.0

Q ss_pred             CCHHHEEEEEEEECCCHHEEEEECCCCCCCEEEEEEEC
Q ss_conf             61000004874411610122333058998348999848
Q gi|254780992|r    3 DISKNINLLLINIITKKEVLMVCQMHSSGVLTLKIQTM   40 (152)
Q Consensus         3 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   40 (152)
                      -|+|+.|+|=+.+++.-|.    |+||+|..+.|.-+.
T Consensus       465 GP~K~~DILGvgM~DscE~----RiHPTG~~i~R~g~~  498 (775)
T TIGR02416       465 GPSKDCDILGVGMFDSCEI----RIHPTGSAIARLGTK  498 (775)
T ss_pred             CCCCCCCEEECCCCCCCEE----EECCCCCEEEEEECC
T ss_conf             8987611420100154425----677788378986302


No 60 
>PRK11281 potassium efflux protein KefA; Provisional
Probab=47.23  E-value=14  Score=17.11  Aligned_cols=34  Identities=35%  Similarity=0.441  Sum_probs=21.9

Q ss_pred             EEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEC
Q ss_conf             03432146757389999999962165079999999953
Q gi|254780992|r   82 ELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCP  119 (152)
Q Consensus        82 ~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~  119 (152)
                      =+-|-+|+++||++++..   .+|.=| .+.+++....
T Consensus       931 IiLFErPiRiGD~vTi~~---~sGtVs-kIriRATTi~  964 (1107)
T PRK11281        931 IILFERPVRIGDTVTIGT---FSGTVS-KIRIRATTIT  964 (1107)
T ss_pred             HHHHCCCCCCCCEEEECC---CCCEEE-EEEEEEEEEE
T ss_conf             988416712476689878---454477-7886434434


No 61 
>pfam00167 FGF Fibroblast growth factor. Fibroblast growth factors are a family of proteins involved in growth and differentiation in a wide range of contexts. They are found in a wide range of organisms, from nematodes to humans. Most share an internal core region of high similarity, conserved residues in which are involved in binding with their receptors. On binding, they cause dimerization of their tyrosine kinase receptors leading to intracellular signalling. There are currently four known tyrosine kinase receptors for fibroblast growth factors. These receptors can each bind several different members of this family. Members of this family have a beta trefoil structure. Most have N-terminal signal peptides and are secreted. A few lack signal sequences but are secreted anyway; still others also lack the signal peptide but are found on the cell surface and within the extracellular matrix. A third group remain intracellular. They have central roles in development, regulating cell prolif
Probab=46.52  E-value=14  Score=17.11  Aligned_cols=16  Identities=25%  Similarity=0.457  Sum_probs=14.3

Q ss_pred             EEEEECCCCCCCCCCC
Q ss_conf             9999878988022799
Q gi|254780992|r  136 VMVAVDEKGNPKSIRT  151 (152)
Q Consensus       136 TfVavDe~g~P~pip~  151 (152)
                      +|||++.+|+|++.++
T Consensus        97 ~ylal~~~G~~k~g~~  112 (123)
T pfam00167        97 WYVALNKNGRPRRGNK  112 (123)
T ss_pred             EEEEECCCCCCCCCCC
T ss_conf             8999887998934775


No 62 
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=43.45  E-value=17  Score=16.63  Aligned_cols=16  Identities=31%  Similarity=0.532  Sum_probs=14.2

Q ss_pred             EEEEECCCCCCCCCCC
Q ss_conf             9999878988022799
Q gi|254780992|r  136 VMVAVDEKGNPKSIRT  151 (152)
Q Consensus       136 TfVavDe~g~P~pip~  151 (152)
                      +|||++.+|+|+.-++
T Consensus        98 wyval~~~G~~r~g~~  113 (126)
T smart00442       98 WYVALNKKGRPRRGQK  113 (126)
T ss_pred             EEEEECCCCCCCCCCC
T ss_conf             8999987998925876


No 63 
>pfam09458 H_lectin H-type lectin domain. The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates. It is sometimes found in association with the F5_F8_type_C domain pfam00754.
Probab=43.12  E-value=25  Score=15.73  Aligned_cols=60  Identities=18%  Similarity=0.238  Sum_probs=46.2

Q ss_pred             HCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECC
Q ss_conf             7389832557520343214675738999999996216507999999995377888608999999999999878
Q gi|254780992|r   70 LCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDE  142 (152)
Q Consensus        70 ~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe  142 (152)
                      +..-+.|.+++..+++    ..+.-+.+..++..+.++++++.++.|..         ..+.++.+.|+|+++
T Consensus        13 F~~~P~V~v~l~~ld~----~~~~~~~~~~~~~~Vt~~gF~i~~~~w~~---------t~~~~~~~~w~Ai~~   72 (72)
T pfam09458        13 FSNIPQVIVSLSSLDS----DSSQNIRFDLQAENITTTGFTIVFRTWGD---------TRIYRLRISWLAIDD   72 (72)
T ss_pred             CCCCCEEEEEEEEEEC----CCCCCEEEEEEEEEECCCCEEEEEEEECC---------CEEEEEEEEEEEECC
T ss_conf             1599989999889980----68842579999999866778999998069---------899998999999779


No 64 
>PHA00430 tail fiber protein
Probab=39.67  E-value=9.8  Score=18.08  Aligned_cols=27  Identities=30%  Similarity=0.425  Sum_probs=24.1

Q ss_pred             EEEECHHHCCCCCCEEHHHHHHHHHHH
Q ss_conf             998483342747843089999999999
Q gi|254780992|r   36 KIQTMPTDVNLDGNVFGGWIMSQIDIA   62 (152)
Q Consensus        36 ~~~~~P~~~N~~G~lfGG~ll~~~D~a   62 (152)
                      ...+.|.|-|++|...|+++..|.+.-
T Consensus       442 ~~~~~~~dGNL~g~kyg~~~d~W~~~~  468 (568)
T PHA00430        442 GQAVFPTDGNLQGTKWGGNLDKWLGAY  468 (568)
T ss_pred             CCEEECCCCCEEEEEECCHHHHHHHCC
T ss_conf             535765898568756033066554122


No 65 
>pfam07100 ASRT Anabaena sensory rhodopsin transducer. The family of bacterial Anabaena sensory rhodopsin transducers are likely to bind sugars or related metabolites. The entire protein is comprised of a single globular domain with an eight-stranded beta-sandwich fold. There are a few characteristics which define this beta-sandwich fold as being distinct from other so-named folds, and these are: 1) a well conserved tryptophan, usually following a polar residue, present at the start of the first strand; this tryptophan appears to be central to a hydrophobic interaction required to hold the two beta-sheets of the sandwich together, and 2) a nearly absolutely conserved asparagine located at the end of the second beta-strand, that hydrogen bonds with the backbone carbonyls of the residues 2 and 4 positions downstream from it, thereby stabilising the characteristic tight turn between strands 2 and 3 of the structure.
Probab=37.51  E-value=30  Score=15.21  Aligned_cols=52  Identities=12%  Similarity=0.134  Sum_probs=37.6

Q ss_pred             EEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf             9962165079999999953778886089999999999998789880227999
Q gi|254780992|r  101 IRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIRTE  152 (152)
Q Consensus       101 V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~g~P~pip~e  152 (152)
                      |.++|.....+.+.+|-+.++.-..-...+..-.---+.+|+--.|.+||++
T Consensus        33 ilN~~d~~A~i~it~~feDrdPvg~y~~~v~arRt~HlR~ndl~~~~~iP~~   84 (120)
T pfam07100        33 ILNTGDEDAHLKITVYFEDRDPVGPYEVTVPARRTRHLRFNDLIDPEPIPRD   84 (120)
T ss_pred             EEECCCCCEEEEEEEEECCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCC
T ss_conf             9757998617999999737988776678874755899982103377658889


No 66 
>PRK10929 hypothetical protein; Provisional
Probab=37.45  E-value=13  Score=17.35  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=22.2

Q ss_pred             EEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEC
Q ss_conf             03432146757389999999962165079999999953
Q gi|254780992|r   82 ELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCP  119 (152)
Q Consensus        82 ~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~  119 (152)
                      =+-|-+|+++||++++..-   +|.=| .+.+++....
T Consensus       929 IiLFErPiRiGD~VTi~~~---sGtVs-kIriRATTi~  962 (1109)
T PRK10929        929 IILFEKPIRIGDTVTIRDL---TGSVT-KINTRATTIS  962 (1109)
T ss_pred             HHHHCCCCCCCCEEEECCC---CCEEE-EEEEEEEEEE
T ss_conf             9883167124766898784---54477-7886434534


No 67 
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=37.35  E-value=30  Score=15.19  Aligned_cols=71  Identities=13%  Similarity=0.193  Sum_probs=45.1

Q ss_pred             EEEEEECHHHCCCCCCEEHH--HHHHHHHHHHHHHHHH-HCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEC
Q ss_conf             89998483342747843089--9999999999999999-738983255752034321467573899999999621
Q gi|254780992|r   34 TLKIQTMPTDVNLDGNVFGG--WIMSQIDIACGIRASQ-LCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIG  105 (152)
Q Consensus        34 ~l~~~~~P~~~N~~G~lfGG--~ll~~~D~aa~~~A~~-~~~~~~vt~~id~i~F~~Pv~~Gd~l~~~a~V~~~G  105 (152)
                      =.+.++---+.|..|.+|+|  +||+|.|..--+-|.. +|+.. .|-..--++=..++.-|+.+.+-|.-.|.-
T Consensus       110 gi~Vi~~GL~~DFrgepFe~s~~Lla~ADkv~kL~aIC~~Cg~~-At~~~Rl~~~~~a~~~~~~i~IGg~e~Y~a  183 (201)
T COG1435         110 GIPVICYGLDTDFRGEPFEGSKYLLAIADKVTKLKAICNVCGRK-ATRTLRLINGGPAVYEGPQILIGGNESYEA  183 (201)
T ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCEEEECCCCCCHH
T ss_conf             98899954465313287844899999987899988889875881-069988417988866798589879753000


No 68 
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=34.44  E-value=25  Score=15.64  Aligned_cols=17  Identities=24%  Similarity=0.403  Sum_probs=14.1

Q ss_pred             EEEEEECCCCCCCCCCC
Q ss_conf             99999878988022799
Q gi|254780992|r  135 VVMVAVDEKGNPKSIRT  151 (152)
Q Consensus       135 fTfVavDe~g~P~pip~  151 (152)
                      =+|||++.+|+|++-++
T Consensus        93 ~wylal~~~G~~r~g~~  109 (123)
T cd00058          93 RWYLALNKKGRPRRGQL  109 (123)
T ss_pred             CCEEEECCCCCCCCCCC
T ss_conf             72999987998922654


No 69 
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=29.88  E-value=40  Score=14.46  Aligned_cols=63  Identities=14%  Similarity=0.117  Sum_probs=31.2

Q ss_pred             EEEEEECCCCCCCEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCC-CCCCCCCC
Q ss_conf             203432146757389999999962165079999999953778886089999999999998789-88022799
Q gi|254780992|r   81 TELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK-GNPKSIRT  151 (152)
Q Consensus        81 d~i~F~~Pv~~Gd~l~~~a~V~~~G~tSm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~-g~P~pip~  151 (152)
                      -.+++.+|...|+.++++.++....+--..-.++..  .  . .+.   ..+..-+|+.+|.+ -+|..++.
T Consensus        61 ~~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~--~--~-gg~---Lie~~a~wilmn~dTrkp~ri~~  124 (250)
T COG3884          61 TEIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLD--G--R-GGG---LIEIEAFWILMNRDTRKPARITD  124 (250)
T ss_pred             EEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEEE--C--C-CCC---EEEEEEEEEEECCCCCCCEECCH
T ss_conf             988775031048753687742221206789999996--4--8-881---89998999998553366424358


No 70 
>pfam06256 Nucleo_LEF-12 Nucleopolyhedrovirus LEF-12 protein. This family consists of several Nucleopolyhedrovirus late expression factor-12 (LEF-12) proteins. The function of this family is unknown.
Probab=28.06  E-value=16  Score=16.80  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEEEEEEECCCCC
Q ss_conf             99999999997389832557520343214675
Q gi|254780992|r   60 DIACGIRASQLCKCRVVTKAVTELLFEKPIQV   91 (152)
Q Consensus        60 D~aa~~~A~~~~~~~~vt~~id~i~F~~Pv~~   91 (152)
                      |.|||+|+ |...++.|+-.+---.|.+|-++
T Consensus        45 DTAAWvCG-Ri~~cnfVSFRv~~~~F~~~~~~   75 (179)
T pfam06256        45 DTAAWVCG-RIDTCNFVSFRVKIAAFQHPSRA   75 (179)
T ss_pred             CCHHHHCC-CCCCCCEEEEEEEHHHHCCCHHH
T ss_conf             40677607-75678558999877663581689


No 71 
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=23.94  E-value=52  Score=13.82  Aligned_cols=19  Identities=47%  Similarity=0.721  Sum_probs=15.5

Q ss_pred             EEEEEECCCCCCCEEEEEE
Q ss_conf             2034321467573899999
Q gi|254780992|r   81 TELLFEKPIQVSDLVHIYT   99 (152)
Q Consensus        81 d~i~F~~Pv~~Gd~l~~~a   99 (152)
                      --+-|-+|+++||.+++-.
T Consensus       653 lIiL~ErpvkvGD~It~g~  671 (835)
T COG3264         653 LIILFERPVKVGDTVTIGT  671 (835)
T ss_pred             HHHEEECCCCCCCEEEECC
T ss_conf             3410355735677799878


No 72 
>PTZ00085 40S ribosomal protein S28; Provisional
Probab=23.32  E-value=43  Score=14.31  Aligned_cols=13  Identities=15%  Similarity=0.570  Sum_probs=6.3

Q ss_pred             EECCCCCCCEEEE
Q ss_conf             3214675738999
Q gi|254780992|r   85 FEKPIQVSDLVHI   97 (152)
Q Consensus        85 F~~Pv~~Gd~l~~   97 (152)
                      -+.|++.||+|.+
T Consensus        44 VkGPVr~GDIL~L   56 (67)
T PTZ00085         44 VKGPVREGDILAL   56 (67)
T ss_pred             CCCCCCCCCEEEE
T ss_conf             4277335649875


No 73 
>pfam01200 Ribosomal_S28e Ribosomal protein S28e.
Probab=23.29  E-value=45  Score=14.20  Aligned_cols=14  Identities=21%  Similarity=0.572  Sum_probs=7.4

Q ss_pred             EEECCCCCCCEEEE
Q ss_conf             43214675738999
Q gi|254780992|r   84 LFEKPIQVSDLVHI   97 (152)
Q Consensus        84 ~F~~Pv~~Gd~l~~   97 (152)
                      +-+.|++.||+|.+
T Consensus        43 NVkGPVr~GDiL~L   56 (67)
T pfam01200        43 NVKGPVRVGDILML   56 (67)
T ss_pred             ECCCCCCCCCEEEE
T ss_conf             14388456659987


No 74 
>cd04457 S1_S28E S1_S28E: S28E, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. S28E protein is a component of the 30S ribosomal subunit. S28E is highly conserved among archaea and eukaryotes. S28E may control precursor RNA splicing and turnover in mRNA maturation process but its function in the ribosome is largely unknown. The structure contains an OB-fold found in many oligosaccharide and nucleic acid binding proteins. This implies that S28E might be involved in protein synthesis.
Probab=22.62  E-value=47  Score=14.07  Aligned_cols=15  Identities=13%  Similarity=0.417  Sum_probs=8.8

Q ss_pred             EEECCCCCCCEEEEE
Q ss_conf             432146757389999
Q gi|254780992|r   84 LFEKPIQVSDLVHIY   98 (152)
Q Consensus        84 ~F~~Pv~~Gd~l~~~   98 (152)
                      +-+.|++.||+|.+.
T Consensus        36 NVkGPVr~GDil~L~   50 (60)
T cd04457          36 NVKGPVREGDILMLL   50 (60)
T ss_pred             ECCCCCCCCCEEEEE
T ss_conf             143884547599882


No 75 
>PRK04007 rps28e 30S ribosomal protein S28e; Validated
Probab=22.07  E-value=49  Score=13.98  Aligned_cols=13  Identities=23%  Similarity=0.692  Sum_probs=5.8

Q ss_pred             EECCCCCCCEEEE
Q ss_conf             3214675738999
Q gi|254780992|r   85 FEKPIQVSDLVHI   97 (152)
Q Consensus        85 F~~Pv~~Gd~l~~   97 (152)
                      -+.|+++||+|.+
T Consensus        45 VkGPVr~GDIl~L   57 (70)
T PRK04007         45 VKGPVRVGDILML   57 (70)
T ss_pred             CCCCCCCCCEEEE
T ss_conf             3388444769987


No 76 
>pfam10472 CReP_N eIF2-alpha phosphatase phosphorylation constitutive repressor. This is the conserved N-terminal domain of CReP, constitutive repressor of eIF2-alpha phosphorylation/protein phosphatase 1, catalytic subunit. It functions in the dephosphorylation of eIF2-alpha under basal conditions in the absence of stress. In response to translation inhibition, there is reduced synthesis of the labile CReP that contributes to elevated levels of eIF2-alpha phosphorylation. The C-terminus, family PP1c, is shared with the apoptosis-associated protein Gadd34 and herpes simplex virus.
Probab=21.10  E-value=23  Score=15.88  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=23.4

Q ss_pred             CCCCCEEHHHHH-HHHHHHHHHHHHHHCCCC
Q ss_conf             747843089999-999999999999973898
Q gi|254780992|r   45 NLDGNVFGGWIM-SQIDIACGIRASQLCKCR   74 (152)
Q Consensus        45 N~~G~lfGG~ll-~~~D~aa~~~A~~~~~~~   74 (152)
                      -.-+.+|||.+= +|+|-+|+..|-|.-+++
T Consensus        82 L~WsqLfgGmiPtRWldfa~~y~aLral~gr  112 (411)
T pfam10472        82 LIWSQLFGGLFPTRWLDFAASYSALRALKGR  112 (411)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             9999986476605566532017777665146


No 77 
>COG2053 RPS28A Ribosomal protein S28E/S33 [Translation, ribosomal structure and biogenesis]
Probab=20.88  E-value=50  Score=13.94  Aligned_cols=11  Identities=27%  Similarity=0.730  Sum_probs=4.4

Q ss_pred             ECCCCCCCEEE
Q ss_conf             21467573899
Q gi|254780992|r   86 EKPIQVSDLVH   96 (152)
Q Consensus        86 ~~Pv~~Gd~l~   96 (152)
                      +.||++||+|.
T Consensus        45 ~GPVrvgDIl~   55 (69)
T COG2053          45 KGPVRVGDILM   55 (69)
T ss_pred             CCCCCCCCEEE
T ss_conf             37711055886


Done!