HHsearch results for GI: 254780992 and protein with PDBid: 1vh5_A
>1vh5_A Hypothetical protein YDII; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.34A {Escherichia coli} SCOP: d.38.1.5 PDB: 1vi8_A 1sbk_A
Probab=99.51 E-value=1.1e-12 Score=92.61 Aligned_cols=108 Identities=6% Similarity=0.062 Sum_probs=89.1
Q ss_pred CCCCEEEEEEECHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-EEEEECCCCCCCEEEEEEEEEEECCC
Q ss_conf 99834899984833427478430899999999999999999738983255752-03432146757389999999962165
Q gi|254780992|r 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVT-ELLFEKPIQVSDLVHIYTQIRKIGKT 107 (152)
Q Consensus 29 ~~~~~~l~~~~~P~~~N~~G~lfGG~ll~~~D~aa~~~A~~~~~~~~vt~~id-~i~F~~Pv~~Gd~l~~~a~V~~~G~t 107 (152)
.++.++++..+.|+++|+.|.+|||.+++++|.+++.++.........++.+| .++|++|++.|+ +.++|++++.||+
T Consensus 34 ~~g~~~~~~~v~~~~~n~~g~lHGG~iatl~D~~~~~a~~~~~~~~~~~~t~~l~i~flr~a~~g~-~~~~a~vv~~Gr~ 112 (148)
T 1vh5_A 34 GDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGR-VRGVCKPLHLGSR 112 (148)
T ss_dssp CSSCEEEEEECSTTTBCTTSSBCHHHHHHHHHHHHHHHHHHTSCTTCEEEEEEEEEEECSCCCSSE-EEEEEEEEEECSS
T ss_pred ECCEEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCE-EEEEEEEEEECCC
T ss_conf 699999999949899699993718999999886444677653036833786666899974688871-8999999991896
Q ss_pred EEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEECCCC
Q ss_conf 0799999999537788860899999999999987898
Q gi|254780992|r 108 SVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKG 144 (152)
Q Consensus 108 Sm~V~V~V~~~~~~~~~~~~~~v~~a~fTfVavDe~g 144 (152)
...++++++. .++ ++++.+..||.-++.+-
T Consensus 113 ~~~~~~~i~d-----~~g--klvA~a~~T~~vl~~~~ 142 (148)
T 1vh5_A 113 HQVWQIEIFD-----EKG--RLCCSSRLTTAILEGGS 142 (148)
T ss_dssp EEEEEEEEEC-----TTS--CEEEEEEEEEEEEC---
T ss_pred EEEEEEEEEE-----CCC--CEEEEEEEEEEEECCCC
T ss_conf 9999999990-----899--89999989999991887