RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus
Liberibacter asiaticus str. psy62]
(152 letters)
>d1ylia1 d.38.1.1 (A:11-152) Putative acyl-coa thioester hydrolase
HI0827 {Haemophilus influenzae [TaxId: 727]}
Length = 142
Score = 98.5 bits (245), Expect = 2e-22
Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 28 HSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEK 87
S GVL L+ MP+D N +G++FGGWIMSQ+D+ I A ++ RVVT AV + F K
Sbjct: 2 QSKGVLLLRTLAMPSDTNANGDIFGGWIMSQMDMGGAILAKEIAHGRVVTVAVESMNFIK 61
Query: 88 PIQVSDLVHIYTQIRKIGKTSVTIYCDVWTC-PRNASSDVLQKTCEATVVMVAVDEKGNP 146
PI V D+V Y Q K+G++S+ I +VW + +A VAVD G
Sbjct: 62 PISVGDVVCCYGQCLKVGRSSIKIKVEVWVKKVASEPIGERYCVTDAVFTFVAVDNNGRS 121
Query: 147 KSI 149
++I
Sbjct: 122 RTI 124
>d2gvha2 d.38.1.1 (A:147-262) Probable acyl-CoA hydrolase AGR_L_2016
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 116
Score = 93.5 bits (232), Expect = 6e-21
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 33 LTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVS 92
+T+ P N G +FGG ++ + A + AS+ C VV + + F + I++
Sbjct: 2 VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAASRYCGKLVVLASSERIDFARAIEIG 61
Query: 93 DLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSI 149
++V + ++G++S++I +W+ + T MVAVD+ P +I
Sbjct: 62 EIVEAQAHVERVGRSSMSIQTKLWSENL--LTGERHITATGHFTMVAVDKDHRPATI 116
>d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus
halodurans [TaxId: 86665]}
Length = 155
Score = 92.4 bits (229), Expect = 2e-20
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 40 MPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYT 99
+P D N G +FGG +++ ID + A + VVT ++ + F+ V D + +
Sbjct: 18 LPPDTNHLGTIFGGKVLAYIDEIAALTAMKHANSAVVTASIDSVDFKSSATVGDALELEG 77
Query: 100 QIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKSIR 150
+ G+TS+ +Y V + N + T E+ + MVAVDE G PK +
Sbjct: 78 FVTHTGRTSMEVYVRVHSN--NLLTGERTLTTESFLTMVAVDESGKPKPVP 126
>d2gvha1 d.38.1.1 (A:9-143) Probable acyl-CoA hydrolase AGR_L_2016
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 135
Score = 91.6 bits (227), Expect = 3e-20
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 27 MHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFE 86
H + + I P D N G +FGG ++ +D I A++ + VT + + F
Sbjct: 4 QHGATTRLIDI-VFPGDTNHHGTLFGGTGLALMDRVAFIAATRFGRTPFVTASCERIDFR 62
Query: 87 KPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNP 146
+P ++ +V + K G+ S+T+ ++ MVA+ E +
Sbjct: 63 QPARIGHIVEFTARPVKAGRRSLTVEVEMVAETII--GRQQHTCTRGIFHMVAIPEGEDA 120
Query: 147 KSI 149
S
Sbjct: 121 ASY 123
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus
cereus [TaxId: 1396]}
Length = 164
Score = 87.8 bits (217), Expect = 4e-19
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88
+ + + PTD+N +FGG I+S++D+ I AS+ + VT ++ + F P
Sbjct: 6 NESRVFKTSRVFPTDLNDHNTLFGGKILSEMDMVASISASRHSRKECVTASMDWVDFLHP 65
Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEKGNPKS 148
++ SD V + + G+TS+ ++ V + + + V VA+ ++ NP
Sbjct: 66 VRSSDCVSYESFVIWTGRTSMEVFVKVVSEYLISGEKR--IAATSFVTFVALSKENNPVP 123
Query: 149 IR 150
+
Sbjct: 124 VP 125
>d2hboa1 d.38.1.5 (A:12-153) Hypothetical protein CC3309
{Caulobacter crescentus [TaxId: 155892]}
Length = 142
Score = 50.0 bits (119), Expect = 8e-08
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90
G L + N GN GG +MS D+A G S VT + F +
Sbjct: 30 GQARLAFRVEEHHTNGLGNCHGGMLMSFADMAWGRIISLQKSYSWVTVRLM-CDFLSGAK 88
Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVW 116
+ D V ++ T+ +W
Sbjct: 89 LGDWVEGEGELISEEDMLFTVRGRIW 114
>d1ixla_ d.38.1.5 (A:) Hypothetical protein PH1136 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 130
Score = 44.6 bits (105), Expect = 3e-06
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 44 VNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRK 103
V+ G V GG+ D A + V E+ F KP++V D + +I +
Sbjct: 40 VDEKGLVHGGFTFGLADYAAMLA----VNEPTVVLGKAEVRFTKPVKVGDKLVAKAKIIE 95
Query: 104 IGKTSVTIYCDVWTCPRNASSDVLQKTCEATVVMVAVDEK 143
+ V+ + E +++
Sbjct: 96 DLGKKKIVEVKVY--------REEEVVLEGKFYCYVLEKH 127
>d1wlua1 d.38.1.5 (A:2-117) Phenylacetic acid degradation protein
PaaI {Thermus thermophilus [TaxId: 274]}
Length = 116
Score = 43.1 bits (101), Expect = 1e-05
Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 29 SSGVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKP 88
+ G + + +NL G GG++ + D A + ++ ++ + + +P
Sbjct: 16 APGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRGPAVALSCRMD---YFRP 72
Query: 89 IQVSDLVHIYTQIRKIGKTSVTIYCDVW 116
+ V + + + T +V
Sbjct: 73 LGAGARVEARAVEVNLSRRTATYRVEVV 100
>d2fs2a1 d.38.1.5 (A:1-131) Phenylacetic acid degradation protein
PaaI {Escherichia coli [TaxId: 562]}
Length = 131
Score = 41.6 bits (97), Expect = 3e-05
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 31 GVLTLKIQTMPTDVNLDGNVFGGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90
G + + +N + GG + S D A + + + + F +P
Sbjct: 32 GFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACN--SQGLAAVASACTIDFLRPGF 89
Query: 91 VSDLVHIYTQIRKIGKTSVTIYCDVWT 117
D + Q+R GK + ++
Sbjct: 90 AGDTLTATAQVRHQGKQTGVYDIEIVN 116
>d1bm8a_ d.34.1.1 (A:) DNA-binding domain of Mlu1-box binding
protein MBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 99
Score = 24.7 bits (54), Expect = 3.7
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 52 GGWIMSQIDIACGIRASQLCKCRVVTKAVTELLFEKPIQ 90
G IM + + A+ + K KA + EK +
Sbjct: 19 TGSIMKRKKDDW-VNATHILKAANFAKAKRTRILEKEVL 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.397
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 532,935
Number of extensions: 21491
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 14
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)