BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus
Liberibacter asiaticus str. psy62]
         (152 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780992|ref|YP_003065405.1| acyl-CoA hydrolase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 152

 Score =  310 bits (794), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 152/152 (100%), Positives = 152/152 (100%)

Query: 1   MVDISKNINLLLINIITKKEVLMVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQID 60
           MVDISKNINLLLINIITKKEVLMVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQID
Sbjct: 1   MVDISKNINLLLINIITKKEVLMVCQMHSSGVLTLKIQTMPTDVNLDGNVFGGWIMSQID 60

Query: 61  IACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPR 120
           IACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPR
Sbjct: 61  IACGIRASQLCKCRVVTKAVTELLFEKPIQVSDLVHIYTQIRKIGKTSVTIYCDVWTCPR 120

Query: 121 NASSDVLQKTCEATVVMVAVDEKGNPKSIRTE 152
           NASSDVLQKTCEATVVMVAVDEKGNPKSIRTE
Sbjct: 121 NASSDVLQKTCEATVVMVAVDEKGNPKSIRTE 152


>gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 675

 Score = 23.5 bits (49), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 14  NIITKKEVLMVCQMHSSGVLTLKIQTMPTDVNLDGNVFG 52
           NI    + L++ ++ SSG   LK+ T+   V+ DG + G
Sbjct: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307


>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 673

 Score = 22.3 bits (46), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 62  ACGIRASQLCKCRVVTKAVTELLFEK 87
           AC I +S+    RVV+    EL FE+
Sbjct: 576 ACEILSSRNISTRVVSVPCFELFFEQ 601


>gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 324

 Score = 21.6 bits (44), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 32  VLTLKIQTMPTDVNLDGNVFGGWIMSQI 59
            + LK+Q + + ++L  ++ GG I  Q+
Sbjct: 137 AIVLKVQGISSGIDLAASIHGGLICYQM 164


>gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 325

 Score = 21.2 bits (43), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 119 PRNASSDVLQKTCE 132
           P  A+S ++QK CE
Sbjct: 253 PHQANSRIIQKVCE 266


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,700
Number of Sequences: 1233
Number of extensions: 2858
Number of successful extensions: 8
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 152
length of database: 328,796
effective HSP length: 67
effective length of query: 85
effective length of database: 246,185
effective search space: 20925725
effective search space used: 20925725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 34 (17.7 bits)