Query gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 279 No_of_seqs 133 out of 2082 Neff 7.7 Searched_HMMs 39220 Date Mon May 30 02:51:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780993.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 COG0730 Predicted permeases [G 100.0 5.6E-43 0 248.4 27.7 241 19-278 3-250 (258) 2 PRK10621 hypothetical protein; 100.0 2.2E-41 0 239.8 27.5 248 8-278 2-253 (269) 3 pfam01925 TauE Sulfite exporte 100.0 2.9E-38 7.4E-43 223.1 26.3 232 27-278 2-236 (236) 4 COG0730 Predicted permeases [G 99.6 1.4E-13 3.6E-18 90.5 13.2 115 25-146 140-255 (258) 5 PRK10621 hypothetical protein; 99.4 2.1E-12 5.3E-17 84.2 11.4 120 22-148 141-260 (269) 6 pfam01925 TauE Sulfite exporte 99.4 1E-11 2.6E-16 80.5 11.0 110 25-141 127-236 (236) 7 COG2119 Predicted membrane pro 97.9 0.0011 2.7E-08 37.4 14.2 149 92-278 33-181 (190) 8 PRK00281 undecaprenyl pyrophos 97.8 0.0016 4.2E-08 36.4 16.2 177 91-276 79-259 (268) 9 pfam02673 BacA Bacitracin resi 97.4 0.006 1.5E-07 33.4 16.3 183 86-276 67-253 (255) 10 PRK12554 undecaprenyl pyrophos 97.0 0.018 4.6E-07 30.8 17.7 178 92-276 81-264 (277) 11 pfam04018 DUF368 Domain of unk 96.7 0.028 7.2E-07 29.8 12.8 167 92-272 49-219 (250) 12 PRK10739 putative dITP- and XT 96.4 0.043 1.1E-06 28.8 11.9 72 80-151 24-97 (197) 13 PRK10520 rhtB homoserine/homos 95.7 0.1 2.5E-06 26.8 14.9 128 124-279 73-201 (205) 14 pfam01810 LysE LysE type trans 95.6 0.12 3E-06 26.4 15.1 131 123-279 59-189 (191) 15 PRK10995 multiple drug resista 95.4 0.14 3.4E-06 26.1 12.4 68 79-146 27-96 (222) 16 PRK11111 hypothetical protein; 95.1 0.17 4.4E-06 25.6 11.5 65 81-145 31-97 (214) 17 pfam01914 MarC MarC family int 95.0 0.18 4.5E-06 25.5 10.2 69 80-148 24-94 (203) 18 TIGR00427 TIGR00427 conserved 94.9 0.19 4.8E-06 25.3 11.4 167 79-278 29-201 (206) 19 PRK11469 hypothetical protein; 93.5 0.39 1E-05 23.6 13.0 36 242-278 164-199 (206) 20 COG2271 UhpC Sugar phosphate p 92.7 0.51 1.3E-05 23.0 8.9 55 187-242 371-427 (448) 21 COG2095 MarC Multiple antibiot 92.4 0.57 1.5E-05 22.8 12.0 159 80-278 27-191 (203) 22 PRK06814 acylglycerophosphoeth 92.3 0.58 1.5E-05 22.7 6.8 89 170-271 342-436 (1139) 23 COG1971 Predicted membrane pro 91.7 0.69 1.8E-05 22.3 13.7 79 70-148 10-91 (190) 24 COG1968 BacA Undecaprenyl pyro 91.0 0.81 2.1E-05 21.9 15.6 170 97-275 84-260 (270) 25 PRK09556 uhpT sugar phosphate 90.3 0.96 2.4E-05 21.5 10.2 15 189-203 377-391 (463) 26 pfam01169 UPF0016 Uncharacteri 89.2 1.2 3E-05 21.1 6.2 43 232-274 35-77 (78) 27 PRK03699 hypothetical protein; 89.0 1.2 3.1E-05 21.0 23.0 122 21-143 50-181 (394) 28 pfam03596 Cad Cadmium resistan 88.6 0.84 2.1E-05 21.8 4.5 56 96-151 27-83 (192) 29 TIGR00712 glpT glycerol-3-phos 88.4 0.98 2.5E-05 21.5 4.7 111 86-203 295-416 (468) 30 TIGR00711 efflux_EmrB drug res 86.2 1.8 4.6E-05 20.0 5.6 40 237-277 301-341 (501) 31 PRK03545 sugar efflux transpor 83.3 2.5 6.3E-05 19.3 19.2 46 99-144 138-183 (390) 32 TIGR00710 efflux_Bcr_CflA drug 82.7 2.6 6.7E-05 19.2 14.4 170 70-267 104-283 (400) 33 COG4300 CadD Predicted permeas 81.2 3 7.7E-05 18.9 7.3 81 71-151 13-94 (205) 34 TIGR02123 TRAP_fused TRAP tran 80.1 3.3 8.3E-05 18.7 4.7 41 163-203 224-267 (681) 35 PRK10323 neutral amino-acid ef 79.2 3.5 9E-05 18.5 15.6 61 85-146 30-95 (195) 36 TIGR00779 cad cadmium resistan 78.9 2.9 7.4E-05 19.0 3.7 81 70-152 3-85 (196) 37 TIGR02840 spore_YtaF putative 74.8 4.7 0.00012 17.8 14.7 183 70-276 7-212 (215) 38 PRK11273 glpT sn-glycerol-3-ph 74.7 4.8 0.00012 17.8 10.5 12 192-203 377-388 (452) 39 PRK10229 threonine efflux syst 74.7 4.8 0.00012 17.8 15.7 130 123-279 71-203 (206) 40 PRK10473 multidrug efflux syst 74.2 4.9 0.00012 17.7 21.4 45 99-143 132-176 (392) 41 PRK08633 2-acyl-glycerophospho 71.4 5.8 0.00015 17.4 16.3 91 168-271 332-428 (1150) 42 TIGR01943 rnfA electron transp 67.5 7 0.00018 16.9 5.7 115 57-215 27-145 (193) 43 COG2035 Predicted membrane pro 66.3 7.5 0.00019 16.8 14.2 75 27-124 8-82 (276) 44 pfam09605 Trep_Strep Hypotheti 65.7 7.7 0.0002 16.7 6.9 28 238-265 159-186 (186) 45 PRK10263 DNA translocase FtsK; 58.8 10 0.00026 16.0 7.0 113 95-220 49-182 (1355) 46 COG2814 AraJ Arabinose efflux 58.4 11 0.00027 15.9 19.1 41 228-269 245-285 (394) 47 PRK10213 nepI ribonucleoside t 58.1 11 0.00027 15.9 18.9 27 238-264 259-285 (394) 48 PRK10091 MFS transport protein 56.4 11 0.00029 15.8 19.2 45 99-143 132-176 (389) 49 PRK10527 hypothetical protein; 56.1 12 0.00029 15.7 6.4 63 88-153 61-124 (125) 50 PRK11102 bicyclomycin/multidru 53.8 13 0.00032 15.5 20.4 45 99-143 120-164 (377) 51 pfam02040 ArsB Arsenical pump 53.8 13 0.00032 15.5 4.7 44 19-65 90-133 (423) 52 pfam02683 DsbD Cytochrome C bi 50.0 15 0.00037 15.2 13.3 21 258-278 184-204 (206) 53 cd03684 ClC_3_like ClC-3-like 49.8 15 0.00038 15.2 7.9 27 91-117 121-147 (445) 54 pfam11833 DUF3353 Protein of u 49.4 15 0.00038 15.1 6.8 20 83-102 38-57 (193) 55 COG3619 Predicted membrane pro 48.0 16 0.0004 15.0 3.5 17 106-122 67-83 (226) 56 cd01115 SLC13_permease Permeas 44.8 18 0.00045 14.7 11.2 44 19-65 84-127 (382) 57 TIGR02357 thia_yuaJ probable p 44.5 18 0.00046 14.7 7.1 26 29-54 52-81 (187) 58 PRK10958 leucine export protei 42.2 20 0.0005 14.5 15.5 132 123-279 73-209 (213) 59 PRK00293 dipZ thiol:disulfide 40.7 21 0.00053 14.4 14.3 38 105-142 230-267 (577) 60 PRK12437 prolipoprotein diacyl 35.5 25 0.00065 13.9 11.1 30 88-117 39-68 (269) 61 TIGR00788 fbt folate/biopterin 35.0 26 0.00066 13.9 3.1 110 163-275 321-443 (594) 62 TIGR00902 2A0127 MFS transport 33.3 28 0.0007 13.7 6.0 63 89-151 122-185 (388) 63 TIGR01710 typeII_sec_gspG gene 31.8 29 0.00075 13.6 3.0 20 18-37 4-23 (137) 64 COG3180 AbrB Putative ammonia 30.6 31 0.00078 13.5 16.9 40 237-276 237-276 (352) 65 TIGR01592 holin_SPP1 holin, SP 30.2 31 0.0008 13.4 3.9 39 60-98 30-69 (82) 66 TIGR00784 citMHS citrate trans 27.9 34 0.00088 13.2 2.9 32 47-81 79-110 (439) 67 TIGR02865 spore_II_E stage II 27.1 36 0.00091 13.1 7.4 15 79-93 70-84 (794) 68 TIGR00935 2a45 arsenical pump 26.8 36 0.00092 13.1 4.2 94 22-118 96-196 (507) 69 PRK11043 inner membrane transp 26.0 37 0.00096 13.0 21.5 42 102-143 138-179 (401) 70 PRK10406 alpha-ketoglutarate t 25.9 38 0.00096 13.0 19.5 45 103-147 169-220 (432) 71 PRK02833 phosphate-starvation- 25.3 39 0.00099 12.9 4.8 62 80-144 65-127 (133) 72 PRK11902 ampG muropeptide tran 23.8 41 0.0011 12.8 17.7 15 180-194 231-246 (402) 73 pfam01790 LGT Prolipoprotein d 23.4 42 0.0011 12.7 13.5 43 79-121 25-67 (257) 74 PRK11663 regulatory protein Uh 23.1 43 0.0011 12.7 17.3 39 105-143 158-196 (434) 75 pfam07690 MFS_1 Major Facilita 23.0 43 0.0011 12.7 20.0 40 101-140 128-167 (345) 76 TIGR00881 2A0104 phosphoglycer 22.9 43 0.0011 12.7 9.0 39 105-143 134-175 (404) 77 TIGR02838 spore_V_AC stage V s 22.8 43 0.0011 12.6 3.4 57 149-208 9-66 (141) 78 PRK09952 shikimate transporter 22.7 44 0.0011 12.6 20.4 44 103-146 170-220 (438) 79 pfam03741 TerC Integral membra 21.7 46 0.0012 12.5 16.5 60 88-150 27-86 (184) 80 pfam06699 PIG-F GPI biosynthes 20.4 49 0.0012 12.4 8.7 26 184-209 81-106 (190) No 1 >COG0730 Predicted permeases [General function prediction only] Probab=100.00 E-value=5.6e-43 Score=248.39 Aligned_cols=241 Identities=27% Similarity=0.351 Sum_probs=211.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 79999999999999999999984021999999999998526898236689999989999999967765788752885535 Q gi|254780993|r 19 VVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMK 98 (279) Q Consensus 19 ~i~~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~ 98 (279) .....+.++++|+++|++.|++|+|||.+.+|.+.+++ +|| |.|.+||+.+..+++.++++.|+|+|++||| T Consensus 3 ~~~~~~~~~~~g~~~g~i~g~~G~Ggg~i~~P~L~~~~----~~~----~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~ 74 (258) T COG0730 3 DLMTLLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLG----LPP----AAALGTSLLAVLFTSLSSALAYLKRGNVDWK 74 (258) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC----CCH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 18999999999999999987163451999999999961----789----9999999999999999999999992686199 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCC--CCCC---CCHHHHHHHHHHHHHHH Q ss_conf 6665456764699999776403663102235899999999997215787-7433--3323---40133211567667666 Q gi|254780993|r 99 ILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRL-YCER--KFPD---NYVKYIWGMVTGFLSGA 172 (279) Q Consensus 99 ~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~-~~~~--~~~~---~~~~~~~g~~~G~~sgl 172 (279) ...++.+++++|+.+|+++..++|++.++..++++++..+++++++++. +.++ ++.+ .......|+.+|+++|. T Consensus 75 ~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~G~ 154 (258) T COG0730 75 LALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKAEDRAARLRPLLFALALLIGFLAGFLSGL 154 (258) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999878788899999999999999999723223333221124640168999999999999983 Q ss_pred HHCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 521126689999998-4898446346667888666778999998538764357451001899999999999999999999 Q gi|254780993|r 173 LGVGGGIFTNLLMLF-YGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLA 251 (279) Q Consensus 173 ~GiGGG~l~vp~l~~-~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iG 251 (279) +|+|||+..+|.+.. .+.|.+++++||....++.+..+...|... .|++||+....+.+++++|+++| T Consensus 155 ~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~-----------~g~~~~~~~~~l~~g~~~G~~lG 223 (258) T COG0730 155 FGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFA-----------LGAVDWPLALLLAVGSILGAYLG 223 (258) T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------CCCCCHHHHHHHHHHHHHHHHHH T ss_conf 0317177899999997257337999999999999999999999998-----------47510989999999999999999 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999830899999999999999999872 Q gi|254780993|r 252 TKLSYMIGKKYLTIGFSMIMFTTSFVF 278 (279) Q Consensus 252 a~l~~~l~~~~lk~~f~i~l~~v~~~m 278 (279) +|+++|++++.+|+.+..+++.++++| T Consensus 224 ~~l~~~~~~~~lr~~~~~~~~~~~~~~ 250 (258) T COG0730 224 ARLARRLSPKVLRRLFALVLLAVAIKL 250 (258) T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 999986799999999999999999999 No 2 >PRK10621 hypothetical protein; Provisional Probab=100.00 E-value=2.2e-41 Score=239.84 Aligned_cols=248 Identities=21% Similarity=0.286 Sum_probs=219.4 Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11788624431799999999999999999999840219999999999985268982366899999899999999677657 Q gi|254780993|r 8 FSLMVFLSKDCVVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFM 87 (279) Q Consensus 8 ~~~~~~~~~~~~i~~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~ 87 (279) |.+|.....+..+. .+++.+|+++|++..+.| |||++.+|+|.. .|+||.. |.+||..+..+.+.++++ T Consensus 2 ~~~m~~~~~~p~~l--~lLf~~g~~AG~inaiAG-GGglIt~PaLl~----~Glpp~~----AnaTNk~a~~~g~~~a~~ 70 (269) T PRK10621 2 ETFMDLFMVSPLLL--GVLFFVAMLAGFIDSIAG-GGGLLTIPALMA----AGMSPAQ----ALATNKLQACGGSFSASL 70 (269) T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHH----CCCCHHH----HHHHHHHHHHHHHHHHHH T ss_conf 67999999629999--999999999998887706-618999999998----7998899----988748999977899999 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCHHHHHHH Q ss_conf 8875288553566654567646999997764036631022358999999999972157877433332---3401332115 Q gi|254780993|r 88 EHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFP---DNYVKYIWGM 164 (279) Q Consensus 88 ~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~~---~~~~~~~~g~ 164 (279) +|+|++++|||...+..+.+.+|+.+|+++..++|+++++.++.++++..+++.+++++..++++++ ........++ T Consensus 71 ~~~r~~~~~~~~~~~~~~~~~iGa~~Ga~l~~~~~~~~f~~iv~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (269) T PRK10621 71 YFIRRKVVNLKDQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVICIGLYFLLMPKLGEEDRQRRLYGLPFALIAGG 150 (269) T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99861467688999999999999999999999589999999999999999999994774675321132100079999999 Q ss_pred HHHHHHHHHHCCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 6766766652112668999999-848984463466678886667789999985387643574510018999999999999 Q gi|254780993|r 165 VTGFLSGALGVGGGIFTNLLML-FYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPI 243 (279) Q Consensus 165 ~~G~~sgl~GiGGG~l~vp~l~-~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~ 243 (279) .+|+++|.+|.|.|.+.++.+. ..|+|.++|.+++..+.+..++.+.+.|...|. |||+..+++.++ T Consensus 151 ~iG~Y~Gffg~G~G~~~~~~l~~~~g~~l~~a~a~~~~l~~~~n~~a~~iF~~~G~------------V~W~~~l~ma~G 218 (269) T PRK10621 151 CVGFYDGFFGPGAGSFYALAFVTLCGFNLAKSTAHAKVLNATSNIGGLLLFILGGK------------VIWATGFVMLVG 218 (269) T ss_pred HHHHHCCEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCE------------EHHHHHHHHHHH T ss_conf 99997262056689999999999929988999999999999999999999993883------------179999999999 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999830899999999999999999872 Q gi|254780993|r 244 SILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVF 278 (279) Q Consensus 244 s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~m 278 (279) +++|+++|+|++.|.+++.+|+.+.++.+.+++|+ T Consensus 219 ~~~Gg~lGa~~a~k~g~~~IR~~~ivv~~~l~ikL 253 (269) T PRK10621 219 QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKL 253 (269) T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999998570889999999999999999 No 3 >pfam01925 TauE Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81. Probab=100.00 E-value=2.9e-38 Score=223.06 Aligned_cols=232 Identities=31% Similarity=0.470 Sum_probs=206.7 Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999999998402199999999999852689823668999998999999996776578875288553566654567 Q gi|254780993|r 27 IVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFV 106 (279) Q Consensus 27 ~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~ 106 (279) +.+++++|+++++.|.|||++.+|++.+++. || +.|++++....+.++..+.+.|+|++++|||..+++.++ T Consensus 2 ~~~~~~~g~v~~~~G~G~~~i~~P~l~~~~~----~~----~~a~~~~~~~~i~~~~~~~~~~~~~~~v~~k~~~~~~~~ 73 (236) T pfam01925 2 LLAGLLAGFLAGLTGFGGGLIAVPLLLLLLG----PP----HVAVGTSLLAVLVTSLSGALAHRRRGNVDWRLALLLALG 73 (236) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 8999999999999998899999999999987----79----999999999999999999999999088538999999999 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 646999997764036631022358999999999972157877433--332340133211567667666521126689999 Q gi|254780993|r 107 LPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCER--KFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLL 184 (279) Q Consensus 107 ~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~--~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~ 184 (279) +++|+.+|+++..++|+++++..++++++..+.+++++++.++++ ++.+++.....|...|+++|++|+|+|...+|+ T Consensus 74 ~iiG~~lG~~l~~~~~~~~l~~~ig~~li~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~G~~g~g~g~~~~~~ 153 (236) T pfam01925 74 GLLGALLGALLLLLLPGAVLKLLFGVLLLLAALLMLLRPRLAAAASRRPPGALALLLAGGLIGFLSGLFGIGGGFLLVPA 153 (236) T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH T ss_conf 99999999999998899999999999999999999970556544444565508999999999999511223353779999 Q ss_pred HHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 998-4898446346667888666778999998538764357451001899999999999999999999999830899999 Q gi|254780993|r 185 MLF-YGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYL 263 (279) Q Consensus 185 l~~-~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~l 263 (279) +.+ .+.|.|++++|+..+.+..+..+.+.|...|. +|+.....+.+++++|+++|+|+.+|+|++.+ T Consensus 154 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~iG~~lG~~l~~ki~~~~~ 221 (236) T pfam01925 154 LLLLLGLPLKKAVATSLLVILLSSLAALLGYALLGL------------VDWPLLLLLLPGALLGALLGARLARRLPPRLL 221 (236) T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH T ss_conf 999829999999999999999999999999997475------------15999999999999999999999988899999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999872 Q gi|254780993|r 264 TIGFSMIMFTTSFVF 278 (279) Q Consensus 264 k~~f~i~l~~v~~~m 278 (279) |+.+..+++.++++| T Consensus 222 r~~~~~~l~~~gi~m 236 (236) T pfam01925 222 RRLFAVLLLLVGLKL 236 (236) T ss_pred HHHHHHHHHHHHHHC T ss_conf 999999999999879 No 4 >COG0730 Predicted permeases [General function prediction only] Probab=99.56 E-value=1.4e-13 Score=90.45 Aligned_cols=115 Identities=27% Similarity=0.362 Sum_probs=101.3 Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHH Q ss_conf 9999999999999998402199999999999852689823668999998999999996776578875-288553566654 Q gi|254780993|r 25 LIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRR-HGTINMKILKDW 103 (279) Q Consensus 25 ~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k-~~~i~~~~~~~l 103 (279) .....|+.+|+.+|++|+|||...+|.+.+. .+.|. +.+++||.+.+..++..+...|.. ++.+||.....+ T Consensus 140 ~~~~~g~~~G~~~G~~G~GgG~~~vp~l~~~---~~~~~----~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 212 (258) T COG0730 140 LALLIGFLAGFLSGLFGVGGGFGIVPALLLL---LLLPL----KLAVATSLAIILNTASNGAALYLFALGAVDWPLALLL 212 (258) T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH---CCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 9999999999999830317177899999997---25733----7999999999999999999999998475109899999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 5676469999977640366310223589999999999721578 Q gi|254780993|r 104 IFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDR 146 (279) Q Consensus 104 ~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~ 146 (279) .+++++|+++|+++.++++++.++..+..+++..+.+++++.. T Consensus 213 ~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~~ 255 (258) T COG0730 213 AVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRGL 255 (258) T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999998679999999999999999999999975 No 5 >PRK10621 hypothetical protein; Provisional Probab=99.44 E-value=2.1e-12 Score=84.17 Aligned_cols=120 Identities=12% Similarity=0.097 Sum_probs=106.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 99999999999999999984021999999999998526898236689999989999999967765788752885535666 Q gi|254780993|r 22 YICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILK 101 (279) Q Consensus 22 ~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~ 101 (279) ........++.+|+-+|.||.|.|.+.++++... .|.|. +.|.+++......+++.+...|..+|++||+.+. T Consensus 141 ~~~~~~~~~~~iG~Y~Gffg~G~G~~~~~~l~~~---~g~~l----~~a~a~~~~l~~~~n~~a~~iF~~~G~V~W~~~l 213 (269) T PRK10621 141 GLPFALIAGGCVGFYDGFFGPGAGSFYALAFVTL---CGFNL----AKSTAHAKVLNATSNIGGLLLFILGGKVIWATGF 213 (269) T ss_pred CHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHH---CCCCH----HHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHH T ss_conf 0079999999999972620566899999999999---29988----9999999999999999999999938831799999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 54567646999997764036631022358999999999972157877 Q gi|254780993|r 102 DWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLY 148 (279) Q Consensus 102 ~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~ 148 (279) .++++.++|+++|+.++...+++++|.++.++.+.++++++++..-+ T Consensus 214 ~ma~G~~~Gg~lGa~~a~k~g~~~IR~~~ivv~~~l~ikL~~d~~g~ 260 (269) T PRK10621 214 VMLVGQFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHGQ 260 (269) T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCH T ss_conf 99999999999999999985708899999999999999999997357 No 6 >pfam01925 TauE Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81. Probab=99.36 E-value=1e-11 Score=80.46 Aligned_cols=110 Identities=28% Similarity=0.455 Sum_probs=97.7 Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 99999999999999984021999999999998526898236689999989999999967765788752885535666545 Q gi|254780993|r 25 LIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWI 104 (279) Q Consensus 25 ~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~ 104 (279) .....|.++|+.+|++|+|||.+.+|.+.+. .+.|++ .+++|+.....+++..+...|...+++||+....+. T Consensus 127 ~~~~~g~~~G~~~G~~g~g~g~~~~~~~~~~---~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 199 (236) T pfam01925 127 ALLLAGGLIGFLSGLFGIGGGFLLVPALLLL---LGLPLK----KAVATSLLVILLSSLAALLGYALLGLVDWPLLLLLL 199 (236) T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH---CCCCHH----HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999999995112233537799999998---299999----999999999999999999999974751599999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 6764699999776403663102235899999999997 Q gi|254780993|r 105 FVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILM 141 (279) Q Consensus 105 ~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~ 141 (279) ++..+|+++|..+...+|++.+|..+..++...++++ T Consensus 200 ~~~~iG~~lG~~l~~ki~~~~~r~~~~~~l~~~gi~m 236 (236) T pfam01925 200 PGALLGALLGARLARRLPPRLLRRLFAVLLLLVGLKL 236 (236) T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999988899999999999999999879 No 7 >COG2119 Predicted membrane protein [Function unknown] Probab=97.89 E-value=0.0011 Score=37.41 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=93.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 28855356665456764699999776403663102235899999999997215787743333234013321156766766 Q gi|254780993|r 92 HGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSG 171 (279) Q Consensus 92 ~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sg 171 (279) +..+=-........--..++..|.+..+.+|++.+.+.-+..-+..+++++...+...++....+... T Consensus 33 ~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~~~~e~~~~~~~~------------ 100 (190) T COG2119 33 RWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKEDDEEAQAASPRG------------ 100 (190) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------------ T ss_conf 80037999999999999999998887514844579999999999999998066221311334455404------------ Q ss_pred HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 65211266899999984898446346667888666778999998538764357451001899999999999999999999 Q gi|254780993|r 172 ALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLA 251 (279) Q Consensus 172 l~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iG 251 (279) +=.-.+..-++.-.|- |.-++|- . .+.. ++.+ |. |..-..+.+.+++.+++..| T Consensus 101 ---~f~~tfi~~FlaE~GD--KTQiATI-------------a--LaA~--~~~~-~~---V~~Gt~lg~~l~s~laVl~G 154 (190) T COG2119 101 ---VFVTTFITFFLAELGD--KTQIATI-------------A--LAAD--YHSP-WA---VFAGTTLGMILASVLAVLLG 154 (190) T ss_pred ---HHHHHHHHHHHHHHCC--HHHHHHH-------------H--HHHC--CCCC-EE---EEHHHHHHHHHHHHHHHHHH T ss_conf ---8999999999999553--8899999-------------9--9603--7996-56---61634899999988999977 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999830899999999999999999872 Q gi|254780993|r 252 TKLSYMIGKKYLTIGFSMIMFTTSFVF 278 (279) Q Consensus 252 a~l~~~l~~~~lk~~f~i~l~~v~~~m 278 (279) .+.++|+|+|++++.=+++....+.+. T Consensus 155 ~~ia~ki~~r~l~~~aallFl~fal~~ 181 (190) T COG2119 155 KLIAGKLPERLLRFIAALLFLIFALVL 181 (190) T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 998711788999999999999999999 No 8 >PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed Probab=97.78 E-value=0.0016 Score=36.39 Aligned_cols=177 Identities=16% Similarity=0.111 Sum_probs=102.2 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 528855356665456764699999776403663102-2358999999999972157877433332340133211567667 Q gi|254780993|r 91 RHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFL-NKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFL 169 (279) Q Consensus 91 k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l-~~~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~ 169 (279) |+++-|+|....+.++.+|...+|..+-..+++..- ....+..+++.++.+++.++.+.+++.+ .....-.+.+|.. T Consensus 79 ~~~~~~~~l~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~i~~~lii~gilL~~~d~~~~~~~~~--~l~~~~a~~IGl~ 156 (268) T PRK00281 79 RGRSEDRRLLLLVIVATIPAVVLGLLFKDFIEEHLFSPWVVAIALIVGGILLIWAEKRKKVKDLD--DLTYKDALLIGLA 156 (268) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH--HCCHHHHHHHHHH T ss_conf 45755589999999997379999999999899983487999999999999999999842679856--5999999999999 Q ss_pred HH---HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 66---652112668999999848984463466678886667789999985387643574510018999999999999999 Q gi|254780993|r 170 SG---ALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISIL 246 (279) Q Consensus 170 sg---l~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ 246 (279) -+ +=|+.=.-.+.-..+..|++.++|.--|-....|+-+.+..--......... ..++...+.-.+.|.+ T Consensus 157 Q~lAliPGiSRSG~TI~a~l~lG~~r~~A~rfSFllsIP~ilga~~~~~~~~~~~~~-------~~~~~~~lig~~~sfi 229 (268) T PRK00281 157 QCLALIPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDLLKSGGVLS-------AADIPALAVGFVVAFV 229 (268) T ss_pred HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHH T ss_conf 993367875645699999999499889999999999999999999999999751154-------5569999999999999 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 999999998308999999999999999998 Q gi|254780993|r 247 ITPLATKLSYMIGKKYLTIGFSMIMFTTSF 276 (279) Q Consensus 247 ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~ 276 (279) .+++.-|...|.-+|.=-+.|++-.+.+|. T Consensus 230 ~~~~sI~~ll~~~~~~~~~~F~iYri~lG~ 259 (268) T PRK00281 230 VALIAIKWLLKYIKRHSFTPFAIYRIVLGA 259 (268) T ss_pred HHHHHHHHHHHHHHHCCCEEHHHHHHHHHH T ss_conf 999999999999988898127999999999 No 9 >pfam02673 BacA Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol. Probab=97.39 E-value=0.006 Score=33.37 Aligned_cols=183 Identities=17% Similarity=0.148 Sum_probs=102.0 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 5788752885535666545676469999977640366310223-589999999999721578774333323401332115 Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNK-AFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGM 164 (279) Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~-~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 164 (279) ..+..++++-++|....+.++.+|.+.+|..+-..+++..-.. ..+..+++.++.+++-++.+.+++.. +.....-.+ T Consensus 67 ~~~~~~~~~~~~~~~~~iiiatlP~~iiG~~~~~~i~~~~~~~~~i~~~lii~gilL~~~d~~~~~~~~~-~~~~~~~a~ 145 (255) T pfam02673 67 LLRSLRRDKPDRRLLLLIIIGTIPAGVVGLLFKDFIEALLRSPVVIAIALIVGGLLLLLAERLGKKRRTL-DDISLKDAL 145 (255) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHCCHHHHH T ss_conf 8642025881368999999999889999999999999985388999999999999999999954377866-647899999 Q ss_pred HHHHHHH---HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 6766766---6521126689999998489844634666788866677899999853876435745100189999999999 Q gi|254780993|r 165 VTGFLSG---ALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIIL 241 (279) Q Consensus 165 ~~G~~sg---l~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~ 241 (279) .+|..-+ +=|+.=.-.+.-..+.+|++.++|.--|-....|+-..+.+--........+. .++...+.-. T Consensus 146 ~IGl~Q~lAliPGiSRSG~TI~a~lllG~~r~~A~~fSFllsIP~i~ga~~~~l~~~~~~~~~-------~~~~~l~~g~ 218 (255) T pfam02673 146 LIGLAQALALIPGVSRSGATITAGLLLGLDREAAARFSFLLAIPAILGAGLLELLKLFDLLSA-------DDLGPLLVGF 218 (255) T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHH T ss_conf 999999954678756445899999994999899999999999999999999999998710446-------5699999999 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999999999998308999999999999999998 Q gi|254780993|r 242 PISILITPLATKLSYMIGKKYLTIGFSMIMFTTSF 276 (279) Q Consensus 242 ~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~ 276 (279) +.|.+-+++.-|.--|.-+|.=-+.|++-.+.+|+ T Consensus 219 i~Sfi~~~~sI~~ll~~~~~~~~~~F~iYri~lGi 253 (255) T pfam02673 219 IVAFVVALLAIKWLLRFLKRHSFKPFAIYRIILGI 253 (255) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH T ss_conf 99999999999999999988898134989977995 No 10 >PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed Probab=96.95 E-value=0.018 Score=30.82 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=98.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHH Q ss_conf 28855356665456764699999776403663102-235899999999997215787--743333234013321156766 Q gi|254780993|r 92 HGTINMKILKDWIFVLPITTVVTSLMISHVDKSFL-NKAFAIFCLLMGILMLKRDRL--YCERKFPDNYVKYIWGMVTGF 168 (279) Q Consensus 92 ~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l-~~~f~v~ll~~a~~~~~~~~~--~~~~~~~~~~~~~~~g~~~G~ 168 (279) +++-++|....+.++.+|.+.+|..+-+.+++..- ....+..++..++.+++-++. +++++ ..+.....-...+|. T Consensus 81 ~~~~~~~l~~~liiatiP~~iiG~~~~~~i~~~~~~~~~ia~~lii~gilL~~ad~~~~~~~~~-~~~~i~~~~A~~IG~ 159 (277) T PRK12554 81 DKKSDFRFGWYLIIATIPAGVIGLLFKDRIEEVLFDLRIVAIALIVTGVLLWIADNLRRSRGRK-NDEDLTFKDAIIVGL 159 (277) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHCCHHHHHHHHH T ss_conf 4664579999999999989999999999999996376999999999999999999975045778-742188999999999 Q ss_pred HH---HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 76---665211266899999984898446346667888666778999998538764357451001899999999999999 Q gi|254780993|r 169 LS---GALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISI 245 (279) Q Consensus 169 ~s---gl~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~ 245 (279) .- -+=|+.=.-.+.-.-+..|++.+.|.--|-....|+-..+.+--......... .+ .++...+.-.+.+. T Consensus 160 ~Q~lAliPGvSRSG~TI~~~l~~G~~r~~Aa~fSFLLsiP~i~ga~~l~~~~~~~~~~-~~-----~~~~~~lig~i~sf 233 (277) T PRK12554 160 AQALALIPGISRSGATIIAGMLLGLTREAAARFSFLLAIPVSLGAGVLELPKIFHDPD-LG-----SLLIPYALAFIAAF 233 (277) T ss_pred HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HH-----HHHHHHHHHHHHHH T ss_conf 9995467875636589999999599999999999999999999999999999872244-06-----68999999999999 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 9999999998308999999999999999998 Q gi|254780993|r 246 LITPLATKLSYMIGKKYLTIGFSMIMFTTSF 276 (279) Q Consensus 246 ~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~ 276 (279) +.+++.-|+-.|.-+|.=-+.|+.-.+.+|+ T Consensus 234 i~~~~si~~ll~~l~~~~~~~F~~Yri~lG~ 264 (277) T PRK12554 234 IAAYLSVRWFMRFMAKGSLAYFAWYCIILGV 264 (277) T ss_pred HHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH T ss_conf 9999999999999987898127999999999 No 11 >pfam04018 DUF368 Domain of unknown function (DUF368). Predicted transmembrane domain of unknown function. Family members have between 6 and 9 predicted transmembrane segments. Probab=96.72 E-value=0.028 Score=29.77 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=87.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 288553566654567646999997764036631----0223589999999999721578774333323401332115676 Q gi|254780993|r 92 HGTINMKILKDWIFVLPITTVVTSLMISHVDKS----FLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTG 167 (279) Q Consensus 92 ~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~----~l~~~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G 167 (279) .+++|++...+++.+...+....+.+.+++=++ ....++++ +...+..+.|+.++ ++.++......|...+ T Consensus 49 ~~~~~~~fLl~l~~G~~~~i~~~s~~i~~ll~~yp~~~~~fF~GL--Il~Si~~l~k~~~~---~~~~~~i~~~~g~~i~ 123 (250) T pfam04018 49 WKHINGNFLLPLGLGILTSILSLAKLISYLLENYPVPTWSFFFGL--ILASIPFLLKQVKK---WSPGRILLFLLGAAIA 123 (250) T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCC---CCHHHHHHHHHHHHHH T ss_conf 996057999999999999999999999999996699999999999--99999999987500---4499999999999999 Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 67666521126689999998489844634666788866677899999853876435745100189999999999999999 Q gi|254780993|r 168 FLSGALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILI 247 (279) Q Consensus 168 ~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~g 247 (279) +.-......-..-....+-..| +++ ...+..=.++|+.--+.-|...... .++...|++...++.+|...| T Consensus 124 ~~~~~~~~~~~~~~~~~lf~~G-----~iA--~~AMILPGISGS~iLLilG~Y~~vi--~ai~~~~l~~L~~f~~G~iiG 194 (250) T pfam04018 124 YLITLLPPAASPPSLLFLFFAG-----AIA--ICAMILPGISGSFILLLLGLYEPVL--GAVSELDLPILLVFGLGAVIG 194 (250) T ss_pred HHHHHCCCCCCCCCHHHHHHHH-----HHH--HHHHHHCCCCHHHHHHHHHHHHHHH--HHHHHCCHHHHHHHHHHHHHH T ss_conf 9999579777885299999999-----999--9998805640889999998089999--999863489999999999999 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 9999999830899999999999999 Q gi|254780993|r 248 TPLATKLSYMIGKKYLTIGFSMIMF 272 (279) Q Consensus 248 a~iGa~l~~~l~~~~lk~~f~i~l~ 272 (279) -..-+|+-+++=+|.-+..++.+.= T Consensus 195 l~~~skii~~ll~~~~~~t~~~i~G 219 (250) T pfam04018 195 LLSFSKLLSYLLKKYRDATLAFLTG 219 (250) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999819999999999 No 12 >PRK10739 putative dITP- and XTP- hydrolase; Provisional Probab=96.45 E-value=0.043 Score=28.76 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=53.6 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 996776578875288553566654567646999997764036--631022358999999999972157877433 Q gi|254780993|r 80 PTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV--DKSFLNKAFAIFCLLMGILMLKRDRLYCER 151 (279) Q Consensus 80 ~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i--~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~ 151 (279) +.++.......+|+.+-+|....-..-....++.|.++.+.+ +-+.++..=|+.++..+++|++.++.++++ T Consensus 24 Flslt~~~~~~~r~~ia~~a~~~a~~il~~F~~~G~~il~~fgIsi~afrIaGGilL~~ia~~Ml~~~~~~~~~ 97 (197) T PRK10739 24 FMSVLKHLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRAETVSISGGIILFLIAIKMIFPSAEGNSS 97 (197) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99984799999999999999999999999999989999999499889999987899999999986266656655 No 13 >PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional Probab=95.73 E-value=0.1 Score=26.82 Aligned_cols=128 Identities=10% Similarity=0.039 Sum_probs=68.3 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHH-HH Q ss_conf 10223589999999999721578774333323401332115676676665211266899999984898446346667-88 Q gi|254780993|r 124 SFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATATSA-GV 202 (279) Q Consensus 124 ~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS~-~~ 202 (279) ..+|++=+.++++++++.++++...+.++..++ ....-.+.-|++..+.-.=.-.+..-++-.+ .|......+.. .. T Consensus 73 ~~lk~~Ga~YLi~Lg~~~~r~~~~~~~~~~~~~-~~~~~~f~~G~l~~l~NPKa~~Ff~a~~pqF-i~~~~~~~~q~~~l 150 (205) T PRK10520 73 EVLKWAGAAYLIWLGIQQWRAAGAIDLHTLAST-QSRRKLFKRAVFVNLTNPKSIVFLAALFPQF-IMPQQPQLMQYLVL 150 (205) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHH T ss_conf 999999999999999999852566775545668-7666899999999925919999999998777-18985249999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 86667789999985387643574510018999999999999999999999998308999999999999999998729 Q gi|254780993|r 203 SALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA 279 (279) Q Consensus 203 ~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~ma 279 (279) ......... .....-+..+..++.++.++-..|+++|+.+.+++..|.++| T Consensus 151 ~~~~~~~~~--------------------------~~~~~~a~~~~~~~~~l~~~~~~~~~nrv~g~~li~~g~~La 201 (205) T PRK10520 151 GVTTVVVDI--------------------------IVMIGYATLAQRIARWIKGPKQMKALNKIFGSLFMLVGALLA 201 (205) T ss_pred HHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999--------------------------999999999999999985949999999999999999999998 No 14 >pfam01810 LysE LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine. Probab=95.56 E-value=0.12 Score=26.44 Aligned_cols=131 Identities=13% Similarity=0.085 Sum_probs=66.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 31022358999999999972157877433332340133211567667666521126689999998489844634666788 Q gi|254780993|r 123 KSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATATSAGV 202 (279) Q Consensus 123 ~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS~~~ 202 (279) ...+++.=+.++++.++++++.++.+.+++.++......-.+..|+...+.-.-.-.+.+-++-.+ .+..+.. ..... T Consensus 59 ~~~l~~~G~~yL~ylg~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~~~llNPK~~lf~~~~~~~f-i~~~~~~-~~~~~ 136 (191) T pfam01810 59 FTVLKLGGGAYLLYLGILTLRAAWSPKSLKLSSSEASLKKSFLRGLLVSLLNPKAILFWLSVGGSF-IGKNQYG-GAQRI 136 (191) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCCCH-HHHHH T ss_conf 999999999999999999998245654333356675488999999999800969999999999997-0776650-78999 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 86667789999985387643574510018999999999999999999999998308999999999999999998729 Q gi|254780993|r 203 SALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA 279 (279) Q Consensus 203 ~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~ma 279 (279) .+. ...... ++ .....-+..++....++..+-..|++.++.+.+++..|++++ T Consensus 137 ~~~-~~~~~~--------------------~~---~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~g~~li~~gi~l~ 189 (191) T pfam01810 137 IFA-AGLILA--------------------SL---IWFSFLAFLASRLARRFKYKKLQRIINAIAGALLIGFGVYLL 189 (191) T ss_pred HHH-HHHHHH--------------------HH---HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999-999999--------------------99---999999999999999970867999999999999999999998 No 15 >PRK10995 multiple drug resistance protein MarC; Provisional Probab=95.38 E-value=0.14 Score=26.11 Aligned_cols=68 Identities=10% Similarity=0.054 Sum_probs=54.2 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9996776578875288553566654567646999997764036--6310223589999999999721578 Q gi|254780993|r 79 APTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV--DKSFLNKAFAIFCLLMGILMLKRDR 146 (279) Q Consensus 79 ~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i--~~~~l~~~f~v~ll~~a~~~~~~~~ 146 (279) ++.++..-..+.+|+.+-+|.......-.+..++.|.++.+.+ +-..++..=|+.++..++.|++.++ T Consensus 27 iFlslt~~~~~~~r~~ia~~a~~~a~~iLl~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ia~~Ml~~~~ 96 (222) T PRK10995 27 LFLGLSGNMTSEERNRQSLMASVYVFAIMMVAFYAGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQ 96 (222) T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999848999999999999999999999999999899999996998999999999999999999853555 No 16 >PRK11111 hypothetical protein; Provisional Probab=95.07 E-value=0.17 Score=25.56 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=49.3 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 96776578875288553566654567646999997764036--631022358999999999972157 Q gi|254780993|r 81 TSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV--DKSFLNKAFAIFCLLMGILMLKRD 145 (279) Q Consensus 81 ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i--~~~~l~~~f~v~ll~~a~~~~~~~ 145 (279) -++..-..+.+|+++-+|.......-.....+.|.++.+.+ +-+.++..=|+.++..+++|++.+ T Consensus 31 l~lt~~~~~~~r~~ia~~a~~~a~~il~~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~ 97 (214) T PRK11111 31 ISMTSHQTAAERNKTNLTANFSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVSIAMSMISGK 97 (214) T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9996799999999999999999999999999988999999699899999994999999999986486 No 17 >pfam01914 MarC MarC family integral membrane protein. Integral membrane protein family that includes the antibiotic resistance protein MarC. These proteins may be transporters. Probab=95.03 E-value=0.18 Score=25.50 Aligned_cols=69 Identities=16% Similarity=0.079 Sum_probs=53.3 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 996776578875288553566654567646999997764036--631022358999999999972157877 Q gi|254780993|r 80 PTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV--DKSFLNKAFAIFCLLMGILMLKRDRLY 148 (279) Q Consensus 80 ~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i--~~~~l~~~f~v~ll~~a~~~~~~~~~~ 148 (279) +.++..-....+|+.+-+|.......-.+..++.|.++.+.+ +-+.++..=|+.++..+++|++.++.+ T Consensus 24 fl~lt~~~~~~~r~~ia~~a~~~a~~il~~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~ml~~~~~~ 94 (203) T pfam01914 24 FISLTENYPAEERKRIILRASIIAFLILLLFLVFGKLILKLFGISIDAFRIAGGILLFLIAIDMLFGKQSK 94 (203) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99985899999999999999999999999999999999999688799999982899999999996586553 No 18 >TIGR00427 TIGR00427 conserved hypothetical protein TIGR00427; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. . Probab=94.92 E-value=0.19 Score=25.33 Aligned_cols=167 Identities=15% Similarity=0.092 Sum_probs=104.1 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CC Q ss_conf 99967765788752885535666545676469999977640366--3102235899999999997215787743333-23 Q gi|254780993|r 79 APTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVD--KSFLNKAFAIFCLLMGILMLKRDRLYCERKF-PD 155 (279) Q Consensus 79 ~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~--~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~-~~ 155 (279) ++-++...+...+|+++++|....-..--....+.|.++.++.+ =+.+|..=|++++..+..|+.-|+.++++++ .+ T Consensus 29 iFi~LTe~y~~~~R~~i~kkA~I~~~~IL~~f~~fG~~Il~~FGIsIdafriAGGILlf~Ia~dml~gK~~~~~~~k~~E 108 (206) T TIGR00427 29 IFISLTESYTAEEREKIAKKAVISAFVILLIFLLFGDLILKYFGISIDAFRIAGGILLFLIALDMLSGKESEKKKHKHDE 108 (206) T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHH T ss_conf 22114888877899999899999999999999987457886608727898998899999999999840255045204134 Q ss_pred CCH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH Q ss_conf 401---33211567667666521126689999998489844634666788866677899999853876435745100189 Q gi|254780993|r 156 NYV---KYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFV 232 (279) Q Consensus 156 ~~~---~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v 232 (279) +.. .-.++..-=-+==+.|. |.+..-.... ..++.++.-..+++-+++.-.++|.. T Consensus 109 ~~e~~~~dsI~v~PLA~PL~aGP--GaIt~~mvl~---~~~~~I~~k~~V~l~Ial~~~~~~l~---------------- 167 (206) T TIGR00427 109 KEESKEIDSIAVVPLALPLIAGP--GAITATMVLI---AKASDIGEKFLVVLAIALVLLITFLL---------------- 167 (206) T ss_pred HHHHHHHHHHCCCCHHHHHCCCC--CHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHH---------------- T ss_conf 78644654102221245420365--1699999999---70330899999999999999999999---------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999830899999999999999999872 Q gi|254780993|r 233 NIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVF 278 (279) Q Consensus 233 ~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~m 278 (279) +.-+..=.|..+|..-+.+-|.++.+|.++|+.| T Consensus 168 ------------~~~~~~i~~~lg~~Gin~~tRimGL~L~AiaV~~ 201 (206) T TIGR00427 168 ------------FLYAAFIIRRLGRTGINVITRIMGLLLAAIAVEF 201 (206) T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf ------------9876899988623018899999999999988887 No 19 >PRK11469 hypothetical protein; Provisional Probab=93.46 E-value=0.39 Score=23.63 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999830899999999999999999872 Q gi|254780993|r 242 PISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVF 278 (279) Q Consensus 242 ~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~m 278 (279) +.+..|..+|.|+.+++.+ +-+.+=+++++.+++|+ T Consensus 164 ~~s~~Gv~lG~~~G~~~g~-~Aei~GG~VLI~IGlki 199 (206) T PRK11469 164 IMSTLGMMVGRFIGSIIGK-KAEILGGLVLIGIGVQI 199 (206) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH T ss_conf 9999999999998898701-99999999999999999 No 20 >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Probab=92.70 E-value=0.51 Score=22.99 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=28.0 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH-H-HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 84898446346667888666778-9-99998538764357451001899999999999 Q gi|254780993|r 187 FYGASIYKATATSAGVSALIAFP-A-LLVRIYSGWGLNGLPPWSLGFVNIGAVLIILP 242 (279) Q Consensus 187 ~~g~~~~~avgTS~~~~~~~a~~-g-~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~ 242 (279) ...+.+|+|+||+....-..+-. | +..-...|...+. ..|.-+|+-+.+...+.. T Consensus 371 a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~-~gW~g~Fi~~~~~a~l~~ 427 (448) T COG2271 371 AAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT-WGWDGGFIVLSIAALLAI 427 (448) T ss_pred HHCCCCHHHCCCHHCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHHHHH T ss_conf 842651743010202033488877488607763046753-687515999999999999 No 21 >COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion] Probab=92.38 E-value=0.57 Score=22.76 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=89.3 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCC Q ss_conf 99677657887528855356665456764699999776403--663102235899999999997215787743333-234 Q gi|254780993|r 80 PTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH--VDKSFLNKAFAIFCLLMGILMLKRDRLYCERKF-PDN 156 (279) Q Consensus 80 ~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~--i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~-~~~ 156 (279) +.+...-+.-.+|+++.+|....-..........|.++.+. ++-+.++..=|+.+...+++|++.++.+.++++ ++. T Consensus 27 f~slt~~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~~~~~~~~~e~~~ 106 (203) T COG2095 27 FISLTKGLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGPTSRPKKKREEGQ 106 (203) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 99997689999999999999999999999999999999999688667778740498999999995687677777866576 Q ss_pred C-HHHHHHHHHHHHHHHHHCCHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH Q ss_conf 0-1332115676676665211266899999--984898446346667888666778999998538764357451001899 Q gi|254780993|r 157 Y-VKYIWGMVTGFLSGALGVGGGIFTNLLM--LFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVN 233 (279) Q Consensus 157 ~-~~~~~g~~~G~~sgl~GiGGG~l~vp~l--~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~ 233 (279) . .....-... =-+.|. |.+..-.. ...+.++...+.+ +.+...+.| T Consensus 107 ~~~iaivPLA~---PliaGP--g~Ist~i~~~~~~~~~~~~~~~~-------i~~~~~~~~------------------- 155 (203) T COG2095 107 EDSIAIVPLAI---PLIAGP--GTIATVIVLSSQYGNSKLAVVLA-------ILLASLLTY------------------- 155 (203) T ss_pred CCCEEEECCCC---CCCCCC--HHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHHH------------------- T ss_conf 57802544657---553475--99999999981357440999999-------999999999------------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999830899999999999999999872 Q gi|254780993|r 234 IGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVF 278 (279) Q Consensus 234 ~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~m 278 (279) ..+.-+..=.|+..+..-+.+.|+++.++..+|++| T Consensus 156 ---------~~l~~s~~i~r~lG~~G~~vl~RimGllL~al~vq~ 191 (203) T COG2095 156 ---------LILLSSSRIMRLLGKTGLNALTRIMGLLLAALGVQM 191 (203) T ss_pred ---------HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH T ss_conf ---------999988999999778889999999999999999999 No 22 >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Probab=92.33 E-value=0.58 Score=22.72 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=41.4 Q ss_pred HHHHHCCHHHHHHHHHH--HCCCCH---HHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 66652112668999999--848984---463466678886667789999-985387643574510018999999999999 Q gi|254780993|r 170 SGALGVGGGIFTNLLML--FYGASI---YKATATSAGVSALIAFPALLV-RIYSGWGLNGLPPWSLGFVNIGAVLIILPI 243 (279) Q Consensus 170 sgl~GiGGG~l~vp~l~--~~g~~~---~~avgTS~~~~~~~a~~g~i~-~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~ 243 (279) -.++|+.||.+.||+-. ...-|. -+.+|.++.+....-+.+++. ...... .++.. -.+... T Consensus 342 l~~~g~~gGlfiVPL~A~iQ~~a~~~~r~rviAanNiln~~~Mv~~~~~~~~l~~~------~~s~~-------~~f~~~ 408 (1139) T PRK06814 342 LFFLAIIGGLYIVPLFAALQAWANPAHRARVIAANNVINAIFMVGGTIILAVLQAL------GFSIP-------WILLFL 408 (1139) T ss_pred HHHHHHHCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHH-------HHHHHH T ss_conf 99999745004522589988528876667877999999999999999999999983------98899-------999999 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 9999999999983089999999999999 Q gi|254780993|r 244 SILITPLATKLSYMIGKKYLTIGFSMIM 271 (279) Q Consensus 244 s~~ga~iGa~l~~~l~~~~lk~~f~i~l 271 (279) ++.........-..+|+..+|-++-.++ T Consensus 409 ~~~~~~~~~y~~~~lP~~~~R~~~~~l~ 436 (1139) T PRK06814 409 ALANLIVAIYILKLLPTNLLRDIFSILF 436 (1139) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999808999999999999 No 23 >COG1971 Predicted membrane protein [Function unknown] Probab=91.68 E-value=0.69 Score=22.30 Aligned_cols=79 Identities=10% Similarity=0.084 Sum_probs=44.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99989999999967765788752885535666545676469999977640366---310223589999999999721578 Q gi|254780993|r 70 AMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVD---KSFLNKAFAIFCLLMGILMLKRDR 146 (279) Q Consensus 70 AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~---~~~l~~~f~v~ll~~a~~~~~~~~ 146 (279) |.+-|+=+..++-..+..++..+-+-..+.+...+..-.+...+|.+....++ .++=+++=.+.+...+.+|+...- T Consensus 10 A~alsmDAFav~l~~G~~~~k~~~~~~L~ia~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f 89 (190) T COG1971 10 AIALSMDAFAVSLGKGLAKHKIRFKEALVIALIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGF 89 (190) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99972169999998315642510899999999999999999999999999999999999999999999999999999980 Q ss_pred CC Q ss_conf 77 Q gi|254780993|r 147 LY 148 (279) Q Consensus 147 ~~ 148 (279) ++ T Consensus 90 ~~ 91 (190) T COG1971 90 KN 91 (190) T ss_pred CH T ss_conf 35 No 24 >COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism] Probab=91.04 E-value=0.81 Score=21.93 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=88.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHH-- Q ss_conf 3566654567646999997764036631022-35899999999997215787743-3332340133211567667666-- Q gi|254780993|r 97 MKILKDWIFVLPITTVVTSLMISHVDKSFLN-KAFAIFCLLMGILMLKRDRLYCE-RKFPDNYVKYIWGMVTGFLSGA-- 172 (279) Q Consensus 97 ~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~-~~f~v~ll~~a~~~~~~~~~~~~-~~~~~~~~~~~~g~~~G~~sgl-- 172 (279) ||......++.+|.+++|..+-.++++.... ...+..+++.++.++.-++.+.+ +.+.......--.+.+|..-.+ T Consensus 84 ~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~~~~~va~~lIv~gi~li~~e~~~~~~~~~~~~~l~~~da~~IGlaQ~lAl 163 (270) T COG1968 84 FRLWLKILVATIPAVVLGLLFKDFIKSHLFNPRVVAIALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQCLAL 163 (270) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHH T ss_conf 99999999999818886677998899871570899999999999999999844355768753289999999999999987 Q ss_pred -HHCC--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf -5211--2668999999848984463466678886667789999985387643574510018999999999999999999 Q gi|254780993|r 173 -LGVG--GGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITP 249 (279) Q Consensus 173 -~GiG--GG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~ 249 (279) =|+. |.++ -....+|++.+.|.--|=....|+...+..--.... .+ .....|++....=.+.+++-+. T Consensus 164 ~PG~SRSGaTI--~~~lllG~~r~~AaefSFlLaIP~m~GA~~l~l~k~--~~-----~~~~~~~~~l~vg~i~AFvv~~ 234 (270) T COG1968 164 IPGTSRSGATI--SGGLLLGLSREAAAEFSFLLAIPAMFGASALDLFKS--GD-----ALSAADLPILLVGFIVAFVVSL 234 (270) T ss_pred CCCCCCCHHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HC-----CHHHHHHHHHHHHHHHHHHHHH T ss_conf 57888638999--999991888988999979989889999999999862--01-----0002106999999999999999 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 99999830899999999999999999 Q gi|254780993|r 250 LATKLSYMIGKKYLTIGFSMIMFTTS 275 (279) Q Consensus 250 iGa~l~~~l~~~~lk~~f~i~l~~v~ 275 (279) +..|.-.|.=+|+=-..|+...+.+| T Consensus 235 ~~I~~ll~~i~~~~~~~F~~Yrivlg 260 (270) T COG1968 235 IAIKFLLRFIKRHSFIPFAIYRIVLG 260 (270) T ss_pred HHHHHHHHHHHHCCCEEHHHHHHHHH T ss_conf 99999999998689702179999999 No 25 >PRK09556 uhpT sugar phosphate antiporter; Reviewed Probab=90.27 E-value=0.96 Score=21.54 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=9.7 Q ss_pred CCCHHHHHHHHHHHH Q ss_conf 898446346667888 Q gi|254780993|r 189 GASIYKATATSAGVS 203 (279) Q Consensus 189 g~~~~~avgTS~~~~ 203 (279) .+-+|+|+||+.... T Consensus 377 ~~~pk~a~gta~G~~ 391 (463) T PRK09556 377 GFVPKKAIGVADGIK 391 (463) T ss_pred HHHCHHHHHHHHHHH T ss_conf 850453554544121 No 26 >pfam01169 UPF0016 Uncharacterized protein family UPF0016. This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Probab=89.23 E-value=1.2 Score=21.09 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=34.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999983089999999999999999 Q gi|254780993|r 232 VNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTT 274 (279) Q Consensus 232 v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v 274 (279) |.+-....+...+.+++.+|.++++++|++++|++-+++.+.. T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~lp~~~i~~~a~~lFl~f 77 (78) T pfam01169 35 VFLGATLALLLATALAVLLGRWLATLLPPRVLHFVAGVLFLAF 77 (78) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 8998999999999999999999997789999999999999960 No 27 >PRK03699 hypothetical protein; Provisional Probab=89.02 E-value=1.2 Score=21.00 Aligned_cols=122 Identities=11% Similarity=0.126 Sum_probs=54.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HHCCCCHHHHHHH----HHHH--HHHHHHHHHHHHHHHHHH-- Q ss_conf 999999999999999999984021999999999998-5268982366899----9998--999999996776578875-- Q gi|254780993|r 21 DYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAF-QLMGIDDSICMHV----AMGT--SLGVIAPTSVMSFMEHRR-- 91 (279) Q Consensus 21 ~~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f-~~~g~~~~~~~~~----AvgT--sl~~~~~ts~~~~~~~~k-- 91 (279) -.-+-.++..+++|.+..-+|...-++.-..++.+. -...+.|++..-. -.|. .......+...+.....| T Consensus 50 ~~~iG~li~~~~~g~L~~k~G~k~~l~~g~~l~~i~~l~~~~~~s~~~l~v~~fl~Glg~G~~~~~~~~~i~~~~~~~~r 129 (394) T PRK03699 50 FLNAGILISIFLNAWLMEIIPLKRQLRFGFILMVLAVAGLMFSHSLALFSIAMFVLGLVSGITMSIGTFLITHVYEGRQR 129 (394) T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH T ss_conf 99999999999999999995950999999999999999999815299999999999867899998899999997060078 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 2885535666545676469999977640-366310223589999999999721 Q gi|254780993|r 92 HGTINMKILKDWIFVLPITTVVTSLMIS-HVDKSFLNKAFAIFCLLMGILMLK 143 (279) Q Consensus 92 ~~~i~~~~~~~l~~~~~~Ga~lGa~l~~-~i~~~~l~~~f~v~ll~~a~~~~~ 143 (279) ..+..+.. ..++.++.++..+.+++.. ..+=++.-.+.++..+......++ T Consensus 130 ~~~l~~~~-~~f~vGa~i~Pli~~~ll~~~~~W~~~y~~~~~~~~~~~~~~~~ 181 (394) T PRK03699 130 GSRLLFTD-SFFSMAGMIFPIIAAYLLARSIEWYWVYLCIGLVAVAIFILTLF 181 (394) T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999-99988999999999999856998899999999999999999998 No 28 >pfam03596 Cad Cadmium resistance transporter. Probab=88.63 E-value=0.84 Score=21.84 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=41.0 Q ss_pred CHHHHHHHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 535666545676-46999997764036631022358999999999972157877433 Q gi|254780993|r 96 NMKILKDWIFVL-PITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCER 151 (279) Q Consensus 96 ~~~~~~~l~~~~-~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~ 151 (279) +.-.+-.++... +..+..++.....+|++|+.-.+++.-+..+++.+++.+.++++ T Consensus 27 ~IviGqylGf~~Lv~~Sl~~a~g~~~ip~~wilGlLGliPi~lGi~~~~~~~~~~~~ 83 (192) T pfam03596 27 HIYIGQYLGSVALVLVSLLFAFVLNLVPEKWILGLLGLIPIYLGIKVLIKGDDDDEE 83 (192) T ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 888447877999999999999998747999999987589999999999727665513 No 29 >TIGR00712 glpT glycerol-3-phosphate transporter; InterPro: IPR005267 This family includes very hydrophobic proteins, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. ; GO: 0015169 glycerol-3-phosphate transmembrane transporter activity, 0015794 glycerol-3-phosphate transport, 0016021 integral to membrane. Probab=88.43 E-value=0.98 Score=21.48 Aligned_cols=111 Identities=15% Similarity=0.090 Sum_probs=62.8 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHH-HHHHCCCCCCCCC-CC----CCC- Q ss_conf 5788752885535666545676469999977640366--3102235899999999-9972157877433-33----234- Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVD--KSFLNKAFAIFCLLMG-ILMLKRDRLYCER-KF----PDN- 156 (279) Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~--~~~l~~~f~v~ll~~a-~~~~~~~~~~~~~-~~----~~~- 156 (279) -.+|+.-++-+|...+ .-..++||+++=.|+++.+= .+-..-++-..+...| +....++-.++.+ .+ ..+ T Consensus 295 EvK~F~~~~s~WaY~l-YEyAgiPGTlLCGW~SDk~Fkg~Rg~~Gv~FM~lv~~Av~vYW~NPAgpeaela~y~awyeNP 373 (468) T TIGR00712 295 EVKHFSLEDSAWAYFL-YEYAGIPGTLLCGWVSDKVFKGKRGATGVLFMILVTIAVVVYWLNPAGPEAELANYSAWYENP 373 (468) T ss_pred HHCCCCCCCCCHHHHH-HHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCH T ss_conf 4114576765146677-676426410002124300002464205789999999998887437997403566545552270 Q ss_pred --CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf --01332115676676665211266899999984898446346667888 Q gi|254780993|r 157 --YVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATATSAGVS 203 (279) Q Consensus 157 --~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~ 203 (279) ..-.+.-..+||+- - |+.+.--|..+.+-+|||.||++... T Consensus 374 y~lvD~i~~~~IGFLI--Y----GPVMLIGL~AleLAPKKAAGTAAG~T 416 (468) T TIGR00712 374 YQLVDFILLIVIGFLI--Y----GPVMLIGLHALELAPKKAAGTAAGFT 416 (468) T ss_pred HHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 5789899999988887--5----47999988897406740111210034 No 30 >TIGR00711 efflux_EmrB drug resistance MFS transporter, drug:H+ antiporter-1 (14 Spanner) (DHA2) family; InterPro: IPR004638 This subfamily of drug efflux proteins, a part of the major facilitator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in Escherichia coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.; GO: 0006810 transport, 0016021 integral to membrane. Probab=86.16 E-value=1.8 Score=20.04 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999-983089999999999999999987 Q gi|254780993|r 237 VLIILPISILITPLATK-LSYMIGKKYLTIGFSMIMFTTSFV 277 (279) Q Consensus 237 ~~~i~~~s~~ga~iGa~-l~~~l~~~~lk~~f~i~l~~v~~~ 277 (279) ..+.++...+.+|+.-| +.+|.++|.+- ..++++.+++.+ T Consensus 301 ~~P~gl~~~l~sPIaG~~~~~k~~~R~l~-~ig~~~~a~~~y 341 (501) T TIGR00711 301 ILPVGLAPLLSSPIAGRMLGDKIDPRLLV-TIGLILYAVGFY 341 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHH T ss_conf 98899999997079999984146806899-999999999998 No 31 >PRK03545 sugar efflux transporter; Provisional Probab=83.34 E-value=2.5 Score=19.33 Aligned_cols=46 Identities=9% Similarity=0.022 Sum_probs=25.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 6665456764699999776403663102235899999999997215 Q gi|254780993|r 99 ILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKR 144 (279) Q Consensus 99 ~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~ 144 (279) ...-+..+.+.|..+|.++.++.+=+..-...++..+...+...+. T Consensus 138 v~~G~slg~vlG~plg~~l~~~~gWr~~F~~~~vl~~~~~l~~~~~ 183 (390) T PRK03545 138 LATGTALAMVLGLPLGRVVGQALGWRTTFLAIGGVALITLLLLIKL 183 (390) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999976448999886280899999999999999999997 No 32 >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily; InterPro: IPR004812 The drug resistance transporter Bcr/CflA proteins are predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in Escherichia coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane. Probab=82.73 E-value=2.6 Score=19.19 Aligned_cols=170 Identities=14% Similarity=0.191 Sum_probs=80.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-CCCCCH---HHHHHHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 9998999999996776578875-288553---566654567646999997--7640366310223589999999999721 Q gi|254780993|r 70 AMGTSLGVIAPTSVMSFMEHRR-HGTINM---KILKDWIFVLPITTVVTS--LMISHVDKSFLNKAFAIFCLLMGILMLK 143 (279) Q Consensus 70 AvgTsl~~~~~ts~~~~~~~~k-~~~i~~---~~~~~l~~~~~~Ga~lGa--~l~~~i~~~~l~~~f~v~ll~~a~~~~~ 143 (279) |.+.|.+.++-.++. +-.|. +.++|+ -...+....=.+|..+|+ |+..|++=+.+-.++.+..+++....++ T Consensus 104 a~gasA~~V~~~Alv--RD~Y~G~~e~s~~~s~l~~~~~~~P~~aP~~Ggai~~~~~l~WhaIF~~L~l~~~~l~a~~f~ 181 (400) T TIGR00710 104 AFGASAALVISQALV--RDIYPGREELSKIYSILMLVLALAPAVAPLIGGAIYVLVFLSWHAIFAVLSLIGILLSALIFF 181 (400) T ss_pred HHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999989999999888--502032578999999999999999878888869999998520999999999999999999998 Q ss_pred --CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf --578774333323401332115676676665211266899999--9848984463466678886667789999985387 Q gi|254780993|r 144 --RDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLM--LFYGASIYKATATSAGVSALIAFPALLVRIYSGW 219 (279) Q Consensus 144 --~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l--~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~ 219 (279) ++.++++++.|.+... -...+..+.= ++.++-.-.+-.......+++..+... . T Consensus 182 ~~pET~~~~~r~P~~~~~----------------~~~~f~~l~k~k~~~gY~L~~ga~~g~~Faf~~~~Pfv~----~-- 239 (400) T TIGR00710 182 LLPETLPKEKRIPLQIST----------------SVETFLLLLKDKEFLGYALIYGASFGGFFAFLSGAPFVY----I-- 239 (400) T ss_pred HCCCCCCHHCCCCHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-- T ss_conf 551227401037403001----------------399986788768889999999998687899998417886----4-- Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 643574510018999999999999999999999998308999999999 Q gi|254780993|r 220 GLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGF 267 (279) Q Consensus 220 ~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f 267 (279) ..++.+|-..|+. +....+..++|+++..|.-+|..++.++|.- T Consensus 240 ~~~gVsp~~fg~l----f~~~~~a~i~g~f~~gr~~~k~~~~~~lr~~ 283 (400) T TIGR00710 240 DIMGVSPSVFGLL----FALNIIAMIFGGFLNGRFIKKIGAKSLLRIA 283 (400) T ss_pred HCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH T ss_conf 0014656778999----9999999999999998666543100147899 No 33 >COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism] Probab=81.18 E-value=3 Score=18.87 Aligned_cols=81 Identities=10% Similarity=0.168 Sum_probs=54.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 99899999999677657887528855356665456764-69999977640366310223589999999999721578774 Q gi|254780993|r 71 MGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLP-ITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYC 149 (279) Q Consensus 71 vgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~-~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~ 149 (279) .+|+.--.+.-.+.=++...|+...+.-.+-.++-..+ ..+...++...++|+||+.-.++..-+..+++..+....+. T Consensus 13 ~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~d~d~ 92 (205) T COG4300 13 IATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLLFAFVLNFVPEEWILGLLGLIPIYLGIKVLILGDDDG 92 (205) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99637799999999997324674798867878868999999999999996184989988875878998468750266767 Q ss_pred CC Q ss_conf 33 Q gi|254780993|r 150 ER 151 (279) Q Consensus 150 ~~ 151 (279) ++ T Consensus 93 e~ 94 (205) T COG4300 93 EE 94 (205) T ss_pred CH T ss_conf 43 No 34 >TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein; InterPro: IPR011853 In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This entry describes such transporters, found in the archaea and in bacteria.. Probab=80.14 E-value=3.3 Score=18.68 Aligned_cols=41 Identities=34% Similarity=0.267 Sum_probs=28.2 Q ss_pred HHHHHHHHHHH---HCCHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 15676676665---211266899999984898446346667888 Q gi|254780993|r 163 GMVTGFLSGAL---GVGGGIFTNLLMLFYGASIYKATATSAGVS 203 (279) Q Consensus 163 g~~~G~~sgl~---GiGGG~l~vp~l~~~g~~~~~avgTS~~~~ 203 (279) ....|.+||-- -+-.|.++.|+|++.|++.+.|-|+..+-+ T Consensus 224 Sal~G~~sGSsvANvVttG~fTIPlMKr~Gy~~~fAgAvEAaAS 267 (681) T TIGR02123 224 SALMGMISGSSVANVVTTGSFTIPLMKRAGYKPEFAGAVEAAAS 267 (681) T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 67887789999988885200003567637779774166688786 No 35 >PRK10323 neutral amino-acid efflux protein; Provisional Probab=79.17 E-value=3.5 Score=18.50 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=32.4 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHH---HHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 65788752885535666545676469---999977640366--310223589999999999721578 Q gi|254780993|r 85 SFMEHRRHGTINMKILKDWIFVLPIT---TVVTSLMISHVD--KSFLNKAFAIFCLLMGILMLKRDR 146 (279) Q Consensus 85 ~~~~~~k~~~i~~~~~~~l~~~~~~G---a~lGa~l~~~i~--~~~l~~~f~v~ll~~a~~~~~~~~ 146 (279) +..+|-.|+.+..-.+...+...+.. ..+++. ....| .+++|++=+.+++++|.++.+.+. T Consensus 30 ~g~~~G~r~tlp~~~Gi~~G~~~~~~l~~~gl~~l-~~~~P~~~~~lk~~Ga~YLlyLA~ki~~s~~ 95 (195) T PRK10323 30 SATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSL-AVIDPAAVHLLSWAGAAYIVWLAWKIATSPT 95 (195) T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99856899999999889899999999999999999-9988899999999999999999999971987 No 36 >TIGR00779 cad cadmium resistance transporter family protein; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.. Probab=78.92 E-value=2.9 Score=18.97 Aligned_cols=81 Identities=10% Similarity=0.131 Sum_probs=53.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 99989999999967765788752885535666545676-469999977640-3663102235899999999997215787 Q gi|254780993|r 70 AMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVL-PITTVVTSLMIS-HVDKSFLNKAFAIFCLLMGILMLKRDRL 147 (279) Q Consensus 70 AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~~-~~Ga~lGa~l~~-~i~~~~l~~~f~v~ll~~a~~~~~~~~~ 147 (279) |.|..+..+..--.+..-+|.+.| |.=.+-.++..- +.-+.++++... ++|++|.--++|+.-++++++.+.+.+. T Consensus 3 atg~d~LVILl~~f~~~Kt~~~~k--dI~iGQYlG~~ili~vSLl~afgv~nliPekWvlGLLGLiPiYLGik~~Ikge~ 80 (196) T TIGR00779 3 ATGVDLLVILLILFARAKTRKEVK--DIYIGQYLGSIILILVSLLLAFGVVNLIPEKWVLGLLGLIPIYLGIKVFIKGEE 80 (196) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCC--EEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEEECCC T ss_conf 058999999999974220268733--268833688999999999998888750641476777645347423176774587 Q ss_pred CCCCC Q ss_conf 74333 Q gi|254780993|r 148 YCERK 152 (279) Q Consensus 148 ~~~~~ 152 (279) +.+++ T Consensus 81 ded~~ 85 (196) T TIGR00779 81 DEDER 85 (196) T ss_pred CCHHH T ss_conf 61368 No 37 >TIGR02840 spore_YtaF putative sporulation protein YtaF; InterPro: IPR014205 This entry represents YtaF, which represents a protein family identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome. The phylogenetic profile of the members matches the subset of the Firmicutes capable of forming endospores. These species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, and Geobacillus kaustophilus.. Probab=74.79 E-value=4.7 Score=17.81 Aligned_cols=183 Identities=14% Similarity=0.138 Sum_probs=88.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHH----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC- Q ss_conf 999899999999677657887528-85535666545----676469999977640366310223589999999999721- Q gi|254780993|r 70 AMGTSLGVIAPTSVMSFMEHRRHG-TINMKILKDWI----FVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK- 143 (279) Q Consensus 70 AvgTsl~~~~~ts~~~~~~~~k~~-~i~~~~~~~l~----~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~- 143 (279) |.+.|+=.. .....|=-|| +++..-....+ ....++=.+|.++..++|.+.=+.+=++.++..++|.+. T Consensus 7 A~A~SlD~f-----~vG~~YGlrkIkip~~S~liIa~~S~l~~~~sM~~G~~L~~~lP~~~~~~lG~~iL~~~G~~~~~~ 81 (215) T TIGR02840 7 AFAVSLDSF-----GVGIAYGLRKIKIPFLSLLIIAVISGLFIFISMLLGKLLAKFLPPKVTEILGAIILIAIGIWIIYN 81 (215) T ss_pred HHHHHHHHH-----HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999-----999997524653166999999999999999999999999974676788899999999999999999 Q ss_pred --CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH----HCCCCHHHHH--HHHHHHHHHHHHHHHHHHH Q ss_conf --5787743333234013321156766766652112668999999----8489844634--6667888666778999998 Q gi|254780993|r 144 --RDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLML----FYGASIYKAT--ATSAGVSALIAFPALLVRI 215 (279) Q Consensus 144 --~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~----~~g~~~~~av--gTS~~~~~~~a~~g~i~~~ 215 (279) |++.+.+++..++.....+-+-..-++...- .+--|-.. -=..+.|+|+ |.+++.-. +..-++-. T Consensus 82 ~~r~k~~~~~~~~~~~~~~vWr~~~~~lg~~~~----IL~~P~~AD~D~SG~I~~kEAllLG~ALsLDa---fGaGiGAs 154 (215) T TIGR02840 82 AFRPKKERKKRSSEKDLSKVWRFELKSLGIVIQ----ILRNPEVADLDKSGNITGKEALLLGIALSLDA---FGAGIGAS 154 (215) T ss_pred HHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHH----HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHHHH T ss_conf 860578887630013576102446500135566----53377626777886200899999999999999---99989998 Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-----HH----HHHHHHHHHHHH Q ss_conf 53876435745100189999999999999999999999983089999-----99----999999999998 Q gi|254780993|r 216 YSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKY-----LT----IGFSMIMFTTSF 276 (279) Q Consensus 216 ~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~-----lk----~~f~i~l~~v~~ 276 (279) ..|.+. +...+...+.+.+..+.|.++.+|..++. .+ ..=+++++..|+ T Consensus 155 l~G~~p------------~~~~~~~~~~S~~fv~~G~~lG~~~~~~~~G~FT~~~~s~~l~G~~Li~lG~ 212 (215) T TIGR02840 155 LLGLNP------------LATSILVAVMSFIFVSLGLKLGKKVSKVSIGKFTIKKFSTFLPGILLILLGV 212 (215) T ss_pred HHCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 861178------------9999999999999999999886788740453135877886648999999999 No 38 >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Probab=74.72 E-value=4.8 Score=17.80 Aligned_cols=12 Identities=42% Similarity=0.451 Sum_probs=4.9 Q ss_pred HHHHHHHHHHHH Q ss_conf 446346667888 Q gi|254780993|r 192 IYKATATSAGVS 203 (279) Q Consensus 192 ~~~avgTS~~~~ 203 (279) +|+++||+..+. T Consensus 377 p~~~~Gt~~G~~ 388 (452) T PRK11273 377 PKKAAGTAAGFT 388 (452) T ss_pred CHHHHHHHHHHH T ss_conf 773678999998 No 39 >PRK10229 threonine efflux system; Provisional Probab=74.65 E-value=4.8 Score=17.79 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=64.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 310223589999999999721578774---33332340133211567667666521126689999998489844634666 Q gi|254780993|r 123 KSFLNKAFAIFCLLMGILMLKRDRLYC---ERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATATS 199 (279) Q Consensus 123 ~~~l~~~f~v~ll~~a~~~~~~~~~~~---~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS 199 (279) -+.+|+.=+.++++++++++++...++ +++.........-.+.-|++..+.-.=.-.+..-++..+ .+......+. T Consensus 71 f~~ik~~Ga~YL~yLG~~~lr~~~~~~~~~~~~~~~~~~~~~~~f~~G~l~nllNPK~~lFf~a~f~qf-i~~~~~~~~~ 149 (206) T PRK10229 71 HTIIMVGGGLYLCWMGYQMLRGALKKEDVAAEEPQVELAKSGRSFLKGLLTNLSNPKAIIYFGSVFSLF-VGDNVGAGAR 149 (206) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-CCCCCCHHHH T ss_conf 999999999999999999998642356765444343555266899999999800829999999998865-4898646899 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 78886667789999985387643574510018999999999999999999999998308999999999999999998729 Q gi|254780993|r 200 AGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA 279 (279) Q Consensus 200 ~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~ma 279 (279) ..+.......... |...+ +...+.-..|...+-.++++.+..+.+++..|++++ T Consensus 150 ~~~~~~~~~~~~~---------------------w~~~~-----~~~~s~~~~~~~~~r~~~~i~~~~G~~~i~~gi~L~ 203 (206) T PRK10229 150 WGIFALIIVETLA---------------------WFTVV-----ASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLI 203 (206) T ss_pred HHHHHHHHHHHHH---------------------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999---------------------99999-----999966999998798899999999999999999999 No 40 >PRK10473 multidrug efflux system protein MdtL; Provisional Probab=74.24 E-value=4.9 Score=17.73 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 666545676469999977640366310223589999999999721 Q gi|254780993|r 99 ILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK 143 (279) Q Consensus 99 ~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~ 143 (279) .......+-+++-.+|.++.++.+=+..-+.++++-++.....++ T Consensus 132 ~~~~~~~~p~~aP~lGg~l~~~~gW~~~F~~l~~~~~l~~l~~~~ 176 (392) T PRK10473 132 LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGIAVLLLSLF 176 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999988888889999998749499999999999999999999 No 41 >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Probab=71.43 E-value=5.8 Score=17.36 Aligned_cols=91 Identities=15% Similarity=0.052 Sum_probs=43.4 Q ss_pred HHHHHHHCCHHHHHHHHHHH--CCCCH---HHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 67666521126689999998--48984---463466678886667789-9999853876435745100189999999999 Q gi|254780993|r 168 FLSGALGVGGGIFTNLLMLF--YGASI---YKATATSAGVSALIAFPA-LLVRIYSGWGLNGLPPWSLGFVNIGAVLIIL 241 (279) Q Consensus 168 ~~sgl~GiGGG~l~vp~l~~--~g~~~---~~avgTS~~~~~~~a~~g-~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~ 241 (279) +.-.++|+.||.+.||+-.+ ..-|. -+.+|.++.+....-+.+ .++..... ..++.. -.+. T Consensus 332 ~~l~~~G~~gGlfiVPL~A~iQ~~a~~~~r~rviAanNi~n~~~mv~~~~~~~~l~~------~~~s~~-------~~f~ 398 (1150) T PRK08633 332 LLFFLFGFSGGLFIVPLNALIQFRAPEKELGEVLAANNFLQNVGMLLFLGLTWLFSY------LGISPA-------GLFY 398 (1150) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHH-------HHHH T ss_conf 999999998677567789998741886552342289899999999999999999998------188999-------9999 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 999999999999983089999999999999 Q gi|254780993|r 242 PISILITPLATKLSYMIGKKYLTIGFSMIM 271 (279) Q Consensus 242 ~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l 271 (279) ..++..........+++|+..+|-+.-.++ T Consensus 399 ~la~~~~~~~~~~~~~lP~~~~R~~~~~~~ 428 (1150) T PRK08633 399 FIALVTLIGTLYTLRKLPDSLLRFLLLVAM 428 (1150) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999857999999999999 No 42 >TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit; InterPro: IPR011293 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the A subunit.; GO: 0006118 electron transport, 0009276 1-2nm peptidoglycan-based cell wall. Probab=67.47 E-value=7 Score=16.89 Aligned_cols=115 Identities=14% Similarity=0.203 Sum_probs=62.1 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 52689823668999998999999996776578875288553566654567646999997764036631022358999999 Q gi|254780993|r 57 QLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLL 136 (279) Q Consensus 57 ~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~ 136 (279) |.+|++.+. ..|+|-+.++.++.+.++...+.=++ ++...++=+.+|++--+..+. T Consensus 27 PF~GVSKk~--~~A~GMg~AvtFVm~lAs~~~Wlv~~----------------------fIL~pl~L~fLrtI~FILVIA 82 (193) T TIGR01943 27 PFLGVSKKL--ETAVGMGLAVTFVMTLASVISWLVDK----------------------FILDPLNLEFLRTIAFILVIA 82 (193) T ss_pred CCCCCCCHH--HHHCCCCHHHHHHHHHHHHHHHHHHH----------------------HCCCCCCCHHHHHHHHHHHHH T ss_conf 533444304--33216618999999999999999986----------------------602313627899999999999 Q ss_pred HHHHHH---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999972---157877433332340133211567667666521126689999998-4898446346667888666778999 Q gi|254780993|r 137 MGILML---KRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLF-YGASIYKATATSAGVSALIAFPALL 212 (279) Q Consensus 137 ~a~~~~---~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~-~g~~~~~avgTS~~~~~~~a~~g~i 212 (279) .-+++. .||..+.-. ...|...=.+++== .++.+|+++. .+++.-++ .+-+++++. T Consensus 83 ~lVQlvE~vvrK~SP~LY--------~~LGIFLPLITTNC----AVLG~aLlni~~~~~l~~S--------~~ya~gA~~ 142 (193) T TIGR01943 83 ALVQLVEMVVRKTSPVLY--------RALGIFLPLITTNC----AVLGVALLNIQLDYNLLQS--------VLYAVGAAL 142 (193) T ss_pred HHHHHHHHEEECCCHHHH--------HHHCCCCCHHHHHH----HHHHHHHHHHHHCCHHHHH--------HHHHHHHHH T ss_conf 988575010017884668--------87134141356779----9988999998511119999--------999999999 Q ss_pred HHH Q ss_conf 998 Q gi|254780993|r 213 VRI 215 (279) Q Consensus 213 ~~~ 215 (279) ||. T Consensus 143 GFt 145 (193) T TIGR01943 143 GFT 145 (193) T ss_pred HHH T ss_conf 999 No 43 >COG2035 Predicted membrane protein [Function unknown] Probab=66.26 E-value=7.5 Score=16.75 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=45.4 Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999999998402199999999999852689823668999998999999996776578875288553566654567 Q gi|254780993|r 27 IVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFV 106 (279) Q Consensus 27 ~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~ 106 (279) .+-|.+-|.-.-.=|+.||.+..=.=.| .. ..+++.+- .+.++...||+...+++.+ T Consensus 8 ~~kG~~mG~AdivPGVSGGTiAlilGIY--------er--------------lI~~i~~~-~~~~~~~~~~~fLi~l~~G 64 (276) T COG2035 8 VFKGILMGAADIVPGVSGGTIALILGIY--------ER--------------LIEAIAGI-FKLDEFKRNVLFLIPLGIG 64 (276) T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH--------HH--------------HHHHHHHH-HHHHHHHHHHHHHHHHHHH T ss_conf 9999999874207887322999999899--------99--------------99987500-1223466404889999999 Q ss_pred HHHHHHHHHHHHCCCCCC Q ss_conf 646999997764036631 Q gi|254780993|r 107 LPITTVVTSLMISHVDKS 124 (279) Q Consensus 107 ~~~Ga~lGa~l~~~i~~~ 124 (279) ...+-..=+.+.+++=++ T Consensus 65 ~~~~i~~~a~ii~~ll~~ 82 (276) T COG2035 65 MLLGIFLFAKIIEYLLEN 82 (276) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999984 No 44 >pfam09605 Trep_Strep Hypothetical bacterial integral membrane protein (Trep_Strep). This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. It is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6. Probab=65.70 E-value=7.7 Score=16.69 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 9999999999999999983089999999 Q gi|254780993|r 238 LIILPISILITPLATKLSYMIGKKYLTI 265 (279) Q Consensus 238 ~~i~~~s~~ga~iGa~l~~~l~~~~lk~ 265 (279) ....+.+++++.+|+.+++|+-+|+.|| T Consensus 159 ~~~~~~t~v~a~iG~~iG~kllkKHF~K 186 (186) T pfam09605 159 IIMVAATVVCGLLGALIGKKLLKKHFEK 186 (186) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999999999999974689 No 45 >PRK10263 DNA translocase FtsK; Provisional Probab=58.79 E-value=10 Score=15.99 Aligned_cols=113 Identities=13% Similarity=0.118 Sum_probs=56.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH------HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 553566654567646999997764036631022358999------99999997215787743333234013321156766 Q gi|254780993|r 95 INMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIF------CLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGF 168 (279) Q Consensus 95 i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~------ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~ 168 (279) =.|...-|-.+--=.|..+|+|++. .|...||++ +++.+.+..||+|........-.+.+.++|.+.=+ T Consensus 49 PSWSQTAWhepIhNlGG~~GAWlAD-----TLFf~FGvLAY~iP~im~~~cW~~fR~r~~~~~iDyf~~slRLiG~LaLi 123 (1355) T PRK10263 49 PSWSQTAWHEPIHNLGGMPGAWLAD-----TLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALI 123 (1355) T ss_pred CCCCCCCCCCHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 8843347786200157635189998-----99999899998899999999999998615676600899999999999999 Q ss_pred HHHH---------------HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 7666---------------521126689999998489844634666788866677899999853876 Q gi|254780993|r 169 LSGA---------------LGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWG 220 (279) Q Consensus 169 ~sgl---------------~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~ 220 (279) +++- -|+-|..+....+ |.-+..|+.++..+..+..=+ +++|+. T Consensus 124 LTSCGLAalN~DDi~YFaSGGVIGsllSsa~l-----P~lN~lGaTL~LL~~WaaGlT---LFTGwS 182 (1355) T PRK10263 124 LTSCGLAAINADDIWYFASGGVIGSLLSTTLQ-----PLLHSSGGTIALLCVWAAGLT---LFTGWS 182 (1355) T ss_pred HHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---HHCCCH T ss_conf 97004654174111102577870087777688-----766306389999999987546---530551 No 46 >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Probab=58.38 E-value=11 Score=15.95 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=25.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 001899999999999999999999999830899999999999 Q gi|254780993|r 228 SLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSM 269 (279) Q Consensus 228 ~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i 269 (279) +...+.|. .....++.++|..+|.|++.|-+.+.+...+.. T Consensus 245 s~~~vs~~-Ll~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~~~l 285 (394) T COG2814 245 SVSAVSLV-LLAFGIAGFIGNLLGGRLADRGPRRALIAALLL 285 (394) T ss_pred CHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 87688999-999989999987777640202106699999999 No 47 >PRK10213 nepI ribonucleoside transporter; Reviewed Probab=58.07 E-value=11 Score=15.92 Aligned_cols=27 Identities=22% Similarity=-0.029 Sum_probs=14.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHH Q ss_conf 999999999999999998308999999 Q gi|254780993|r 238 LIILPISILITPLATKLSYMIGKKYLT 264 (279) Q Consensus 238 ~~i~~~s~~ga~iGa~l~~~l~~~~lk 264 (279) ....+++++|..++.|+..|-+++.+. T Consensus 259 ~~fGi~~~~Gn~l~G~l~dr~~~~~l~ 285 (394) T PRK10213 259 LSFGIASFVGTSLSSFILKRSVKLALA 285 (394) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999996310878999 No 48 >PRK10091 MFS transport protein AraJ; Provisional Probab=56.40 E-value=11 Score=15.76 Aligned_cols=45 Identities=4% Similarity=-0.001 Sum_probs=28.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 666545676469999977640366310223589999999999721 Q gi|254780993|r 99 ILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK 143 (279) Q Consensus 99 ~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~ 143 (279) ...-+..+.+.|..+|.++.++.+=+..-+..+++.++..+...+ T Consensus 132 v~~g~s~a~v~G~p~g~~l~~~~gWR~~F~~~~~l~~~~~~~~~~ 176 (389) T PRK10091 132 MVSGMTVANLFGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIWF 176 (389) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999987448899999999999999999999 No 49 >PRK10527 hypothetical protein; Provisional Probab=56.10 E-value=12 Score=15.73 Aligned_cols=63 Identities=6% Similarity=0.092 Sum_probs=34.2 Q ss_pred HHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 887528-855356665456764699999776403663102235899999999997215787743333 Q gi|254780993|r 88 EHRRHG-TINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCERKF 153 (279) Q Consensus 88 ~~~k~~-~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~ 153 (279) +.|+++ .+..|.=............+..++. +..+.+....+.+....+++++++..++++++ T Consensus 61 ~~w~~~r~i~~~~K~~a~~~m~~~~~~s~~~~---~~~~v~~~l~~~~~~v~~~i~r~Pt~~~~~~~ 124 (125) T PRK10527 61 RFWQKHRAMPPGAKPRAILLILLTFAISLWLV---QMPWVRIMLLVILACLLIFMWRIPVIDEKQQK 124 (125) T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC T ss_conf 99998899278999999999999999999997---37999999999999999886026788610235 No 50 >PRK11102 bicyclomycin/multidrug efflux system; Provisional Probab=53.80 E-value=13 Score=15.52 Aligned_cols=45 Identities=7% Similarity=0.079 Sum_probs=27.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 666545676469999977640366310223589999999999721 Q gi|254780993|r 99 ILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK 143 (279) Q Consensus 99 ~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~ 143 (279) ...-...+..+|..+|+++.++.+=+..-+..+++.++..+..++ T Consensus 120 ~~~~~~~~~~~~p~iGg~l~~~~gWr~~F~~~~~~~~l~~~l~~~ 164 (377) T PRK11102 120 VTLVMTIAPLLAPIIGGYLLVWFSWHSIFWVLALAAILASALVFF 164 (377) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999704888887799981356689999999999999999999 No 51 >pfam02040 ArsB Arsenical pump membrane protein. Probab=53.78 E-value=13 Score=15.52 Aligned_cols=44 Identities=9% Similarity=0.415 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 79999999999999999999984021999999999998526898236 Q gi|254780993|r 19 VVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSI 65 (279) Q Consensus 19 ~i~~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~ 65 (279) .--++.++++.++++.+++-- .--++++|+...+-..+++||.. T Consensus 90 ~~L~~~l~l~~a~~Safl~Nd---ttvLlltPvvi~i~~~l~~~P~~ 133 (423) T pfam02040 90 RRMFVFIVLLGAIVAALFAND---GAALILTPIVLAMVRALGFNKKA 133 (423) T ss_pred HHHHHHHHHHHHHHHHHHHCC---CCEEEHHHHHHHHHHHCCCCCCC T ss_conf 479999999999999998144---02000167899999981999631 No 52 >pfam02683 DsbD Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family. Probab=50.03 E-value=15 Score=15.18 Aligned_cols=21 Identities=5% Similarity=0.341 Sum_probs=18.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999999872 Q gi|254780993|r 258 IGKKYLTIGFSMIMFTTSFVF 278 (279) Q Consensus 258 l~~~~lk~~f~i~l~~v~~~m 278 (279) -..+++|++++++++.+++.+ T Consensus 184 ~~~~~v~~v~G~~li~~gi~~ 204 (206) T pfam02683 184 KNSRWIRIASGVLLILIGILL 204 (206) T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999 No 53 >cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn Probab=49.82 E-value=15 Score=15.16 Aligned_cols=27 Identities=4% Similarity=0.000 Sum_probs=14.0 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 528855356665456764699999776 Q gi|254780993|r 91 RHGTINMKILKDWIFVLPITTVVTSLM 117 (279) Q Consensus 91 k~~~i~~~~~~~l~~~~~~Ga~lGa~l 117 (279) |+++-|.|.....+.++-+++..++=+ T Consensus 121 ~~~~~~~r~llaaGaAAGiaAaF~APi 147 (445) T cd03684 121 RRNEAKRREILSAAAAAGVAVAFGAPI 147 (445) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 688888889998366665888837865 No 54 >pfam11833 DUF3353 Protein of unknown function (DUF3353). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length. Probab=49.42 E-value=15 Score=15.13 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=11.0 Q ss_pred HHHHHHHHHCCCCCHHHHHH Q ss_conf 77657887528855356665 Q gi|254780993|r 83 VMSFMEHRRHGTINMKILKD 102 (279) Q Consensus 83 ~~~~~~~~k~~~i~~~~~~~ 102 (279) +....+.+|+|+++.+.... T Consensus 38 LM~rLr~Rq~Gki~v~~~ir 57 (193) T pfam11833 38 LMQRLRQRQEGKIKVPEAIR 57 (193) T ss_pred HHHHHHHHHCCCCCHHHHHH T ss_conf 99999876356776377775 No 55 >COG3619 Predicted membrane protein [Function unknown] Probab=48.00 E-value=16 Score=15.00 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHHHCCCC Q ss_conf 76469999977640366 Q gi|254780993|r 106 VLPITTVVTSLMISHVD 122 (279) Q Consensus 106 ~~~~Ga~lGa~l~~~i~ 122 (279) .-++|...+.....+.. T Consensus 67 ~Fv~Gv~~~~~~~r~~~ 83 (226) T COG3619 67 AFVLGVAAAELISRRAT 83 (226) T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999999843 No 56 >cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices. Probab=44.82 E-value=18 Score=14.73 Aligned_cols=44 Identities=25% Similarity=0.264 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 79999999999999999999984021999999999998526898236 Q gi|254780993|r 19 VVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSI 65 (279) Q Consensus 19 ~i~~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~ 65 (279) -.-.+..+...++++.+++.. .-..++.|+..-+....|.+|+. T Consensus 84 ~~l~~~~~~~~~~lS~~isn~---a~~~i~~Pi~~~i~~~~~~~~~~ 127 (382) T cd01115 84 RRLLLLLMLVTAFLSAFMSNT---ATVAIMLPVALGLAAKLDISPSR 127 (382) T ss_pred HHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHCCCCCHH T ss_conf 999999999999998731430---78885289999999986999314 No 57 >TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ; InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptococcus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.. Probab=44.54 E-value=18 Score=14.70 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHHHCHH--H--HHHHHHHH Q ss_conf 99999999999840219--9--99999999 Q gi|254780993|r 29 ASFLSGTLSGLFGVGGG--L--VMVPVLSK 54 (279) Q Consensus 29 ~g~~~G~~~gl~G~GGG--~--i~vP~l~~ 54 (279) .|+.+|++-|+.-+=.| . +.-|...+ T Consensus 52 ~G~~~GLi~GlL~~i~G~ay~~~l~~~Q~~ 81 (187) T TIGR02357 52 AGLVAGLIWGLLKIILGKAYKNILHPVQVL 81 (187) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 998998999999999656512400088999 No 58 >PRK10958 leucine export protein LeuE; Provisional Probab=42.19 E-value=20 Score=14.50 Aligned_cols=132 Identities=11% Similarity=-0.030 Sum_probs=62.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 31022358999999999972157----87743333234013321156766766652112668999999848984463466 Q gi|254780993|r 123 KSFLNKAFAIFCLLMGILMLKRD----RLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATAT 198 (279) Q Consensus 123 ~~~l~~~f~v~ll~~a~~~~~~~----~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgT 198 (279) -..+|+.=+.+++++++++++.. +.++.+..........-.+.-|++..+.-.=...+..-++-.+ +|+..... T Consensus 73 f~vlk~~Ga~YLi~LGik~lrs~~~~~~~~~~~~~~~~~~~~~~~f~~G~l~~l~NPKa~lFf~a~fpqF-i~~~~~~~- 150 (213) T PRK10958 73 FNVVKYLGAAYLLYLGVKMLRAALRGWRARKAEAAASPAVDGGAPFRKALILSLTNPKAILFFVSFFVQF-VDPNYAHP- 150 (213) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCCCCH- T ss_conf 9999999999999999999998874014455444556776556799999999724933999989976632-68888728- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHH Q ss_conf 6788866677899999853876435745100189999999999999999999999983089-999999999999999987 Q gi|254780993|r 199 SAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIG-KKYLTIGFSMIMFTTSFV 277 (279) Q Consensus 199 S~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~-~~~lk~~f~i~l~~v~~~ 277 (279) .............+.+ .....-.+.++++..++.++-. .+.+++..+.+++..|++ T Consensus 151 ~~~~~~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~vfig~g~~ 207 (213) T PRK10958 151 ALSFLILATILQLVSF-----------------------CYLSFLIFSGAFLAQYFRRRKKLAAGGNSLVGLLFVGFAAK 207 (213) T ss_pred HHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999-----------------------99999999999999999758799999999999999999999 Q ss_pred HC Q ss_conf 29 Q gi|254780993|r 278 FA 279 (279) Q Consensus 278 ma 279 (279) +| T Consensus 208 LA 209 (213) T PRK10958 208 LA 209 (213) T ss_pred HH T ss_conf 98 No 59 >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional Probab=40.73 E-value=21 Score=14.37 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 67646999997764036631022358999999999972 Q gi|254780993|r 105 FVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILML 142 (279) Q Consensus 105 ~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~ 142 (279) ..+++.+..|..+...+-+-++...++++.+++++.|+ T Consensus 230 ~lG~~~~~~G~~~q~~lQ~P~vl~~~~~lfv~laLSmf 267 (577) T PRK00293 230 LLGLVVAAAGLQFQAALQHPYVLIGLAILFVLLALSMF 267 (577) T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999877899987342999999999999999986 No 60 >PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed Probab=35.48 E-value=25 Score=13.90 Aligned_cols=30 Identities=3% Similarity=0.173 Sum_probs=12.3 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 887528855356665456764699999776 Q gi|254780993|r 88 EHRRHGTINMKILKDWIFVLPITTVVTSLM 117 (279) Q Consensus 88 ~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l 117 (279) +..|++.+|.+....+...+++++.+|+.+ T Consensus 39 r~~k~~g~~~~~~~~~~~~~vi~giiGaRl 68 (269) T PRK12437 39 RNGKKKNVPFDVILDLVLYAFPFAILGARI 68 (269) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999986989899999999999999999999 No 61 >TIGR00788 fbt folate/biopterin transporter; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters , . This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).; GO: 0016020 membrane. Probab=35.02 E-value=26 Score=13.86 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=59.7 Q ss_pred HHHHHHHHHHHHCCHHHHHHH-----HHHHCCCCHH-HHHHHHHHHHHH-----HHHHHHHH--HHHCCCCCCCCCCCCH Q ss_conf 156766766652112668999-----9998489844-634666788866-----67789999--9853876435745100 Q gi|254780993|r 163 GMVTGFLSGALGVGGGIFTNL-----LMLFYGASIY-KATATSAGVSAL-----IAFPALLV--RIYSGWGLNGLPPWSL 229 (279) Q Consensus 163 g~~~G~~sgl~GiGGG~l~vp-----~l~~~g~~~~-~avgTS~~~~~~-----~a~~g~i~--~~~~G~~~~~~~~~~~ 229 (279) |++.=...-+.+..+-...+- .+-..++=.. ..|.......+. ..+++... |.++-+..+..|++.. T Consensus 321 gvl~~~~~~~~~~~~~i~~~~~~~~~~~C~~~F~~~P~~I~~p~~F~f~s~~~~~~~P~~~~~~F~~~t~~L~~~P~f~g 400 (594) T TIGR00788 321 GVLALVKVQILGLKGAIQYTSIVVAVVVCVSSFVTLPLEIAKPLLFIFLSRIAYAVLPGASSAVFVATTNCLPGGPEFLG 400 (594) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEE T ss_conf 69999999998689999999999999888644530566785678999999999997033015443553661278842787 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 1899999999999999999999999830899999999999999999 Q gi|254780993|r 230 GFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTS 275 (279) Q Consensus 230 G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~ 275 (279) - +.. ...=.++++.|..+=.+..|++|++-+|++|.+.-++.. T Consensus 401 ~-~~~--~~~~~l~~l~Gv~~~~~F~~~~P~~S~R~~~~~~~~l~~ 443 (594) T TIGR00788 401 R-VKL--VTNGILGSLLGVVVYDRFLKTLPKRSYRLIFGVTTLLYT 443 (594) T ss_pred E-EHH--HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 6-416--788899999889987446652560458899999999999 No 62 >TIGR00902 2A0127 MFS transporter, phenyl propionate permease (PPP) family; InterPro: IPR005276 This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. . Probab=33.33 E-value=28 Score=13.70 Aligned_cols=63 Identities=6% Similarity=0.127 Sum_probs=48.0 Q ss_pred HHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 8752885535666545-67646999997764036631022358999999999972157877433 Q gi|254780993|r 89 HRRHGTINMKILKDWI-FVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCER 151 (279) Q Consensus 89 ~~k~~~i~~~~~~~l~-~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~ 151 (279) ..||=.+|.--++.++ ..=++|+.+-..+..+++++.+..++...+-...+-.+.|+..+|++ T Consensus 122 WQ~Q~~LDYGKVRL~GS~AF~~G~~~~G~l~~~~~~~~I~~~LT~~~~~~~~~~L~~PTI~P~~ 185 (388) T TIGR00902 122 WQKQIGLDYGKVRLIGSVAFVLGVVLFGKLVTMVDERVILALLTLLLAFYLLIFLLKPTIQPKD 185 (388) T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 5553387643344667799998888862135333147999999999999999998468999987 No 63 >TIGR01710 typeII_sec_gspG general secretion pathway protein G; InterPro: IPR010054 This entry represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex. Probab=31.81 E-value=29 Score=13.56 Aligned_cols=20 Identities=5% Similarity=0.413 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 17999999999999999999 Q gi|254780993|r 18 CVVDYICLIIVASFLSGTLS 37 (279) Q Consensus 18 ~~i~~i~~l~~~g~~~G~~~ 37 (279) ..+|.+.+++++|++++++. T Consensus 4 TLlE~~VVlvIlGLLaalv~ 23 (137) T TIGR01710 4 TLLEIMVVLVILGLLAALVV 23 (137) T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 26788999999999999986 No 64 >COG3180 AbrB Putative ammonia monooxygenase [General function prediction only] Probab=30.65 E-value=31 Score=13.45 Aligned_cols=40 Identities=5% Similarity=0.099 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999998308999999999999999998 Q gi|254780993|r 237 VLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSF 276 (279) Q Consensus 237 ~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~ 276 (279) ......-.+.|+.+|.|+.+..-....|..+..++..++. T Consensus 237 wl~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l 276 (352) T COG3180 237 WLLAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIAL 276 (352) T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHH T ss_conf 9999999999999744421788998673101599999999 No 65 >TIGR01592 holin_SPP1 holin, SPP1 family; InterPro: IPR006479 This group of sequences represent one of more than 30 families of phage proteins, all lacking detectable homology with each other, known or believed to act as holins. Holins act in cell lysis by bacteriophage. Members of this family are found in phage PBSX and phage SPP1, among others. . Probab=30.16 E-value=31 Score=13.41 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=28.3 Q ss_pred CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 89823668999998-9999999967765788752885535 Q gi|254780993|r 60 GIDDSICMHVAMGT-SLGVIAPTSVMSFMEHRRHGTINMK 98 (279) Q Consensus 60 g~~~~~~~~~AvgT-sl~~~~~ts~~~~~~~~k~~~i~~~ 98 (279) -+|.+..-|+.-+. |..++.|+...+.+.+||++++--+ T Consensus 30 PvdE~~i~~~~~~~Y~~~s~~Ft~~vsl~a~~KnN~~T~k 69 (82) T TIGR01592 30 PVDEESISTLVDAVYSIFSVVFTIGVSLWAWYKNNYITRK 69 (82) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 3072039999999999999999998987665025411087 No 66 >TIGR00784 citMHS citrate transporter; InterPro: IPR014738 This entry consists of known and predicted citrate transporters. It includes two characterised citrate/proton symporters, CitM and CitH, from Bacillus subtilis . Both of these proteins couple the uptake of citrate in complex with a divalent cation to the uptake of protons, but differ in their metal ion specificities. CitM transports citrate in complex with Mg(2+), Ni(2+), Mn(2+), Co(2+), and Zn2(+), while CitH transports citrate in complex with Ca(2+), Ba(2+), and Sr(2+). A third paralog, YraO, exists in B. subtilis, but the function of this protein is not known. . Probab=27.90 E-value=34 Score=13.18 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=15.8 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999985268982366899999899999999 Q gi|254780993|r 47 VMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPT 81 (279) Q Consensus 47 i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~t 81 (279) ++=|..--++..-.-| +.+.|+||...++.++ T Consensus 79 LFDPli~KILS~VKGD---P~KIavGtAVLtMlia 110 (439) T TIGR00784 79 LFDPLIEKILSIVKGD---PLKIAVGTAVLTMLIA 110 (439) T ss_pred CCHHHHHHHHHHCCCC---CCEEEHHHHHHHHHHH T ss_conf 7304789886231589---6214233289999986 No 67 >TIGR02865 spore_II_E stage II sporulation protein E; InterPro: IPR014221 This entry contains the stage II sporulation protein E (SpoIIE), which is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation and it has phosphatase activity, located in the C-terminal region, which is required to activate sigma-F. All members of this entry are found in endospore-forming Gram-positive bacteria. A homologous protein, not a member of this entry, is found in the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis.. Probab=27.08 E-value=36 Score=13.10 Aligned_cols=15 Identities=0% Similarity=-0.033 Sum_probs=5.2 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 999677657887528 Q gi|254780993|r 79 APTSVMSFMEHRRHG 93 (279) Q Consensus 79 ~~ts~~~~~~~~k~~ 93 (279) ++.-+.-..+..+++ T Consensus 70 ~iiL~~~~lk~~~~~ 84 (794) T TIGR02865 70 VIILLSYVLKNLKDK 84 (794) T ss_pred HHHHHHHHHHCCCCC T ss_conf 999999998134312 No 68 >TIGR00935 2a45 arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria . The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane . The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane. Probab=26.80 E-value=36 Score=13.07 Aligned_cols=94 Identities=13% Similarity=0.309 Sum_probs=56.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCC Q ss_conf 9999999999999999998402199999999999852689823668999998999-------999996776578875288 Q gi|254780993|r 22 YICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLG-------VIAPTSVMSFMEHRRHGT 94 (279) Q Consensus 22 ~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~-------~~~~ts~~~~~~~~k~~~ 94 (279) +..++++...++.+++-- |--++++|+-.-+..-++++|.....--++.+.. -+.++=..-+-.++||-. T Consensus 96 f~~~~LlgA~vsAffaNd---ga~LilTPivi~l~~~L~f~~~~~L~~~~~~gfIad~as~~l~vsNlv~ivs~d~~K~g 172 (507) T TIGR00935 96 FVFLVLLGAVVSAFFAND---GAALILTPIVIALLEVLGFNPRTILAFVVAAGFIADAASLPLIVSNLVNIVSADYRKFG 172 (507) T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCCEEEEEECHHHHCC T ss_conf 999999999999987556---79899619999999973889441325431433011230467877554666401023226 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 553566654567646999997764 Q gi|254780993|r 95 INMKILKDWIFVLPITTVVTSLMI 118 (279) Q Consensus 95 i~~~~~~~l~~~~~~Ga~lGa~l~ 118 (279) +|+.....-.+.+.+-+.+-++.. T Consensus 173 lgF~~y~~~M~p~~~~~~~~~~~~ 196 (507) T TIGR00935 173 LGFAEYTSHMLPGNILVLVATLLV 196 (507) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 847777677467999999999999 No 69 >PRK11043 inner membrane transport protein YdhC; Provisional Probab=25.98 E-value=37 Score=12.99 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 545676469999977640366310223589999999999721 Q gi|254780993|r 102 DWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK 143 (279) Q Consensus 102 ~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~ 143 (279) ..++.-+++-.+|+++..+.+=+..-....++-++..+..++ T Consensus 138 ~~~i~p~laP~iGg~l~~~~gWr~iF~~l~~~gvll~l~~~~ 179 (401) T PRK11043 138 LVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLW 179 (401) T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999889999970478699999999999999999986 No 70 >PRK10406 alpha-ketoglutarate transporter; Provisional Probab=25.94 E-value=38 Score=12.98 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=23.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHHHHHHCCCCC Q ss_conf 45676469999977640366310-------2235899999999997215787 Q gi|254780993|r 103 WIFVLPITTVVTSLMISHVDKSF-------LNKAFAIFCLLMGILMLKRDRL 147 (279) Q Consensus 103 l~~~~~~Ga~lGa~l~~~i~~~~-------l~~~f~v~ll~~a~~~~~~~~~ 147 (279) ...+.+.++.....+.+.++++. +-..++......++++-++-++ T Consensus 169 ~~~G~lla~~v~~~l~~~l~~~~~~~wGWRipFlig~i~~li~l~lR~~l~E 220 (432) T PRK10406 169 LIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDE 220 (432) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999999999999997406822222510999999999999999999972777 No 71 >PRK02833 phosphate-starvation-inducible protein PsiE; Provisional Probab=25.28 E-value=39 Score=12.92 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=44.9 Q ss_pred HHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 99677657887528-855356665456764699999776403663102235899999999997215 Q gi|254780993|r 80 PTSVMSFMEHRRHG-TINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKR 144 (279) Q Consensus 80 ~ts~~~~~~~~k~~-~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~ 144 (279) +-=..=..+|.|++ +.+.|.....++.+++--.+- .+.-|-+.+-..-+++++..+.+.... T Consensus 65 FEFialIikYfk~~~HfplryfiyIGITAiiRliIv---~H~~~~~tLl~a~aILlLvi~L~i~~~ 127 (133) T PRK02833 65 FEFIALIVKYFKSGGHFPLRYFIYIGITAIIRLIIV---DHESPMDTLLYAGAILLLVIGLFILNS 127 (133) T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999998689733799999999999999998---658898899999999999999999755 No 72 >PRK11902 ampG muropeptide transporter; Reviewed Probab=23.79 E-value=41 Score=12.75 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=6.2 Q ss_pred HHHHHHH-HCCCCHHH Q ss_conf 8999999-84898446 Q gi|254780993|r 180 FTNLLML-FYGASIYK 194 (279) Q Consensus 180 l~vp~l~-~~g~~~~~ 194 (279) +..|++. -.|++..+ T Consensus 231 m~~pFll~dlG~s~~~ 246 (402) T PRK11902 231 LSTTFLIRGAGFSAGE 246 (402) T ss_pred HHHHHHHHHCCCCHHH T ss_conf 8789999752999999 No 73 >pfam01790 LGT Prolipoprotein diacylglyceryl transferase. Probab=23.41 E-value=42 Score=12.71 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=31.0 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9996776578875288553566654567646999997764036 Q gi|254780993|r 79 APTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV 121 (279) Q Consensus 79 ~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i 121 (279) +..+..-+.+..|++.+|.+....+...+++++.+|+.+...+ T Consensus 25 ~l~~~~~~~~~~~r~g~~~~~~~~l~~~~~i~giiGARl~~vl 67 (257) T pfam01790 25 ILLAYWLARKRAKKRGINKDQLDDLLLWAVLGGIIGARLGYVL 67 (257) T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEE T ss_conf 9999999999998769898999999999999999864057778 No 74 >PRK11663 regulatory protein UhpC; Provisional Probab=23.07 E-value=43 Score=12.68 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 676469999977640366310223589999999999721 Q gi|254780993|r 105 FVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK 143 (279) Q Consensus 105 ~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~ 143 (279) +++..+..+.+++..+..=+..-.+.++..++.++..++ T Consensus 158 vG~~l~~~l~~~i~~~~gWr~~F~~~g~~~~v~~~~~~~ 196 (434) T PRK11663 158 VGGALIPLVVGAIALHYGWRYGMIIAGIIAIVVGLFLCW 196 (434) T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 778888999999999806299999999999999999998 No 75 >pfam07690 MFS_1 Major Facilitator Superfamily. Probab=23.02 E-value=43 Score=12.67 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 6545676469999977640366310223589999999999 Q gi|254780993|r 101 KDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGIL 140 (279) Q Consensus 101 ~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~ 140 (279) .....+..+|..+++.+.+..+-++.-...++......+. T Consensus 128 ~~~~ig~~ig~~i~~~l~~~~~~~~~f~~~~~~~~i~~i~ 167 (345) T pfam07690 128 AGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVL 167 (345) T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8602454312489999997014889999999999999999 No 76 >TIGR00881 2A0104 phosphoglycerate transporter family protein; InterPro: IPR000849 Proteins in this group are involved in the transport system that mediates the uptake of a number of sugar phosphates as well as the regulatory components that are responsible for induction of this transport system by external glucose 6-phosphate. In Escherichia coli its role in transmembrane signalling may involve sugar-phosphate-binding sites and transmembrane orientations similar to those of the transport protein . The following proteins in this entry, involved in the uptake of phosphorylated metabolites, are evolutionary related , : E. coli, Bacillus subtilis and Haemophilus influenzae glycerol-3- phosphate transporter (gene glpT). Salmonella typhimurium phosphoglycerate transporter (gene pgtP). E. coli and S. typhimurium hexose-6-phosphate transporter (gene uhpT). E. coli and S. typhimurium protein uhpC. UhpC is necessary for the expression of uhpT and seems to act jointly with the uhpB sensor/kinase protein. Human glucose 6-phosphate translocase . These proteins of about 50 kDa apparently contain 12 transmembrane regions.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane. Probab=22.93 E-value=43 Score=12.66 Aligned_cols=39 Identities=8% Similarity=-0.034 Sum_probs=22.5 Q ss_pred HHHHHHH-HHHHHHHCCCCCCHH--HHHHHHHHHHHHHHHHC Q ss_conf 6764699-999776403663102--23589999999999721 Q gi|254780993|r 105 FVLPITT-VVTSLMISHVDKSFL--NKAFAIFCLLMGILMLK 143 (279) Q Consensus 105 ~~~~~Ga-~lGa~l~~~i~~~~l--~~~f~v~ll~~a~~~~~ 143 (279) +++.+.+ ++........+.++. -..=+...++.++-.+. T Consensus 134 vGG~~~pp~~~~~~~~~~~w~~~~~~~~~g~~aii~s~~~~~ 175 (404) T TIGR00881 134 VGGGLLPPLVLFGIALLYSWHVVSSFIVPGIIAIIVSLICLL 175 (404) T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 757899999999999881655688999999999999889544 No 77 >TIGR02838 spore_V_AC stage V sporulation protein AC; InterPro: IPR014203 This entry describes stage V sporulation protein AC; a paralog of stage V sporulation protein AE. Both are proteins found to be present in a species, if and only if, that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sporulation defect.. Probab=22.78 E-value=43 Score=12.64 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=34.2 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHH Q ss_conf 4333323401332115676676665211266899999984898446346-66788866677 Q gi|254780993|r 149 CERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATA-TSAGVSALIAF 208 (279) Q Consensus 149 ~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avg-TS~~~~~~~a~ 208 (279) ..|.+|+..+.-+..+++|.+=-.+|- .+...++.++.++.+++-. |+..+++..++ T Consensus 9 ~~~PKP~~lKNc~~AF~~GGLIC~iGq---~~~~fy~~~f~~se~~a~~~t~~tlIfl~al 66 (141) T TIGR02838 9 KYEPKPPYLKNCVMAFLVGGLICLIGQ---LISDFYLRYFQFSEKTAGSPTVATLIFLSAL 66 (141) T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH T ss_conf 720797634667677767759998999---9999998553534765037289999999999 No 78 >PRK09952 shikimate transporter; Provisional Probab=22.66 E-value=44 Score=12.63 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHHHHHHCCCC Q ss_conf 45676469999977640366310-------223589999999999721578 Q gi|254780993|r 103 WIFVLPITTVVTSLMISHVDKSF-------LNKAFAIFCLLMGILMLKRDR 146 (279) Q Consensus 103 l~~~~~~Ga~lGa~l~~~i~~~~-------l~~~f~v~ll~~a~~~~~~~~ 146 (279) ...+.+.++.+...+...++++. +-..++....+.++++-++-+ T Consensus 170 ~~~G~llas~~~~~l~~~l~~~~~~~wGWRipFlig~l~~li~l~iR~~l~ 220 (438) T PRK09952 170 YGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGME 220 (438) T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 899999999999999983688888531429999999999999999998278 No 79 >pfam03741 TerC Integral membrane protein TerC family. This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions. Probab=21.75 E-value=46 Score=12.53 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=35.1 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 887528855356665456764699999776403663102235899999999997215787743 Q gi|254780993|r 88 EHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCE 150 (279) Q Consensus 88 ~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~ 150 (279) .++|++...|-....+. .=+.-...++++.+.. ++++.++++++++.+++++++++..++ T Consensus 27 ~~~r~~al~~Gi~~A~v-~R~i~i~~~~~ll~~~--~~l~~igg~~Li~~~~k~~~~~~~~~~ 86 (184) T pfam03741 27 PEQQKKALFWGIIGALV-LRIILILLGSALLELF--DWILLIGGAFLLYTAIKLLRENEEDDE 86 (184) T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99999999999999999-9999999999999970--799999999999999999873234432 No 80 >pfam06699 PIG-F GPI biosynthesis protein family Pig-F. PIG-F is involved in glycosylphosphatidylinositol (GPI) anchor biosynthesis. Probab=20.35 E-value=49 Score=12.36 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=12.6 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99984898446346667888666778 Q gi|254780993|r 184 LMLFYGASIYKATATSAGVSALIAFP 209 (279) Q Consensus 184 ~l~~~g~~~~~avgTS~~~~~~~a~~ 209 (279) .+..+|.|..+-..-.-.+..-.+.- T Consensus 81 ~lILfGAPl~~~~~~T~l~a~hls~L 106 (190) T pfam06699 81 LLVLFGAPLLEHLLETFLLALHLSVL 106 (190) T ss_pred HHHHHCCCHHHCHHHHHHHHHHHHHH T ss_conf 99996853664309999999999999 Done!