Query         gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 279
No_of_seqs    133 out of 2082
Neff          7.7 
Searched_HMMs 39220
Date          Mon May 30 02:51:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780993.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG0730 Predicted permeases [G 100.0 5.6E-43       0  248.4  27.7  241   19-278     3-250 (258)
  2 PRK10621 hypothetical protein; 100.0 2.2E-41       0  239.8  27.5  248    8-278     2-253 (269)
  3 pfam01925 TauE Sulfite exporte 100.0 2.9E-38 7.4E-43  223.1  26.3  232   27-278     2-236 (236)
  4 COG0730 Predicted permeases [G  99.6 1.4E-13 3.6E-18   90.5  13.2  115   25-146   140-255 (258)
  5 PRK10621 hypothetical protein;  99.4 2.1E-12 5.3E-17   84.2  11.4  120   22-148   141-260 (269)
  6 pfam01925 TauE Sulfite exporte  99.4   1E-11 2.6E-16   80.5  11.0  110   25-141   127-236 (236)
  7 COG2119 Predicted membrane pro  97.9  0.0011 2.7E-08   37.4  14.2  149   92-278    33-181 (190)
  8 PRK00281 undecaprenyl pyrophos  97.8  0.0016 4.2E-08   36.4  16.2  177   91-276    79-259 (268)
  9 pfam02673 BacA Bacitracin resi  97.4   0.006 1.5E-07   33.4  16.3  183   86-276    67-253 (255)
 10 PRK12554 undecaprenyl pyrophos  97.0   0.018 4.6E-07   30.8  17.7  178   92-276    81-264 (277)
 11 pfam04018 DUF368 Domain of unk  96.7   0.028 7.2E-07   29.8  12.8  167   92-272    49-219 (250)
 12 PRK10739 putative dITP- and XT  96.4   0.043 1.1E-06   28.8  11.9   72   80-151    24-97  (197)
 13 PRK10520 rhtB homoserine/homos  95.7     0.1 2.5E-06   26.8  14.9  128  124-279    73-201 (205)
 14 pfam01810 LysE LysE type trans  95.6    0.12   3E-06   26.4  15.1  131  123-279    59-189 (191)
 15 PRK10995 multiple drug resista  95.4    0.14 3.4E-06   26.1  12.4   68   79-146    27-96  (222)
 16 PRK11111 hypothetical protein;  95.1    0.17 4.4E-06   25.6  11.5   65   81-145    31-97  (214)
 17 pfam01914 MarC MarC family int  95.0    0.18 4.5E-06   25.5  10.2   69   80-148    24-94  (203)
 18 TIGR00427 TIGR00427 conserved   94.9    0.19 4.8E-06   25.3  11.4  167   79-278    29-201 (206)
 19 PRK11469 hypothetical protein;  93.5    0.39   1E-05   23.6  13.0   36  242-278   164-199 (206)
 20 COG2271 UhpC Sugar phosphate p  92.7    0.51 1.3E-05   23.0   8.9   55  187-242   371-427 (448)
 21 COG2095 MarC Multiple antibiot  92.4    0.57 1.5E-05   22.8  12.0  159   80-278    27-191 (203)
 22 PRK06814 acylglycerophosphoeth  92.3    0.58 1.5E-05   22.7   6.8   89  170-271   342-436 (1139)
 23 COG1971 Predicted membrane pro  91.7    0.69 1.8E-05   22.3  13.7   79   70-148    10-91  (190)
 24 COG1968 BacA Undecaprenyl pyro  91.0    0.81 2.1E-05   21.9  15.6  170   97-275    84-260 (270)
 25 PRK09556 uhpT sugar phosphate   90.3    0.96 2.4E-05   21.5  10.2   15  189-203   377-391 (463)
 26 pfam01169 UPF0016 Uncharacteri  89.2     1.2   3E-05   21.1   6.2   43  232-274    35-77  (78)
 27 PRK03699 hypothetical protein;  89.0     1.2 3.1E-05   21.0  23.0  122   21-143    50-181 (394)
 28 pfam03596 Cad Cadmium resistan  88.6    0.84 2.1E-05   21.8   4.5   56   96-151    27-83  (192)
 29 TIGR00712 glpT glycerol-3-phos  88.4    0.98 2.5E-05   21.5   4.7  111   86-203   295-416 (468)
 30 TIGR00711 efflux_EmrB drug res  86.2     1.8 4.6E-05   20.0   5.6   40  237-277   301-341 (501)
 31 PRK03545 sugar efflux transpor  83.3     2.5 6.3E-05   19.3  19.2   46   99-144   138-183 (390)
 32 TIGR00710 efflux_Bcr_CflA drug  82.7     2.6 6.7E-05   19.2  14.4  170   70-267   104-283 (400)
 33 COG4300 CadD Predicted permeas  81.2       3 7.7E-05   18.9   7.3   81   71-151    13-94  (205)
 34 TIGR02123 TRAP_fused TRAP tran  80.1     3.3 8.3E-05   18.7   4.7   41  163-203   224-267 (681)
 35 PRK10323 neutral amino-acid ef  79.2     3.5   9E-05   18.5  15.6   61   85-146    30-95  (195)
 36 TIGR00779 cad cadmium resistan  78.9     2.9 7.4E-05   19.0   3.7   81   70-152     3-85  (196)
 37 TIGR02840 spore_YtaF putative   74.8     4.7 0.00012   17.8  14.7  183   70-276     7-212 (215)
 38 PRK11273 glpT sn-glycerol-3-ph  74.7     4.8 0.00012   17.8  10.5   12  192-203   377-388 (452)
 39 PRK10229 threonine efflux syst  74.7     4.8 0.00012   17.8  15.7  130  123-279    71-203 (206)
 40 PRK10473 multidrug efflux syst  74.2     4.9 0.00012   17.7  21.4   45   99-143   132-176 (392)
 41 PRK08633 2-acyl-glycerophospho  71.4     5.8 0.00015   17.4  16.3   91  168-271   332-428 (1150)
 42 TIGR01943 rnfA electron transp  67.5       7 0.00018   16.9   5.7  115   57-215    27-145 (193)
 43 COG2035 Predicted membrane pro  66.3     7.5 0.00019   16.8  14.2   75   27-124     8-82  (276)
 44 pfam09605 Trep_Strep Hypotheti  65.7     7.7  0.0002   16.7   6.9   28  238-265   159-186 (186)
 45 PRK10263 DNA translocase FtsK;  58.8      10 0.00026   16.0   7.0  113   95-220    49-182 (1355)
 46 COG2814 AraJ Arabinose efflux   58.4      11 0.00027   15.9  19.1   41  228-269   245-285 (394)
 47 PRK10213 nepI ribonucleoside t  58.1      11 0.00027   15.9  18.9   27  238-264   259-285 (394)
 48 PRK10091 MFS transport protein  56.4      11 0.00029   15.8  19.2   45   99-143   132-176 (389)
 49 PRK10527 hypothetical protein;  56.1      12 0.00029   15.7   6.4   63   88-153    61-124 (125)
 50 PRK11102 bicyclomycin/multidru  53.8      13 0.00032   15.5  20.4   45   99-143   120-164 (377)
 51 pfam02040 ArsB Arsenical pump   53.8      13 0.00032   15.5   4.7   44   19-65     90-133 (423)
 52 pfam02683 DsbD Cytochrome C bi  50.0      15 0.00037   15.2  13.3   21  258-278   184-204 (206)
 53 cd03684 ClC_3_like ClC-3-like   49.8      15 0.00038   15.2   7.9   27   91-117   121-147 (445)
 54 pfam11833 DUF3353 Protein of u  49.4      15 0.00038   15.1   6.8   20   83-102    38-57  (193)
 55 COG3619 Predicted membrane pro  48.0      16  0.0004   15.0   3.5   17  106-122    67-83  (226)
 56 cd01115 SLC13_permease Permeas  44.8      18 0.00045   14.7  11.2   44   19-65     84-127 (382)
 57 TIGR02357 thia_yuaJ probable p  44.5      18 0.00046   14.7   7.1   26   29-54     52-81  (187)
 58 PRK10958 leucine export protei  42.2      20  0.0005   14.5  15.5  132  123-279    73-209 (213)
 59 PRK00293 dipZ thiol:disulfide   40.7      21 0.00053   14.4  14.3   38  105-142   230-267 (577)
 60 PRK12437 prolipoprotein diacyl  35.5      25 0.00065   13.9  11.1   30   88-117    39-68  (269)
 61 TIGR00788 fbt folate/biopterin  35.0      26 0.00066   13.9   3.1  110  163-275   321-443 (594)
 62 TIGR00902 2A0127 MFS transport  33.3      28  0.0007   13.7   6.0   63   89-151   122-185 (388)
 63 TIGR01710 typeII_sec_gspG gene  31.8      29 0.00075   13.6   3.0   20   18-37      4-23  (137)
 64 COG3180 AbrB Putative ammonia   30.6      31 0.00078   13.5  16.9   40  237-276   237-276 (352)
 65 TIGR01592 holin_SPP1 holin, SP  30.2      31  0.0008   13.4   3.9   39   60-98     30-69  (82)
 66 TIGR00784 citMHS citrate trans  27.9      34 0.00088   13.2   2.9   32   47-81     79-110 (439)
 67 TIGR02865 spore_II_E stage II   27.1      36 0.00091   13.1   7.4   15   79-93     70-84  (794)
 68 TIGR00935 2a45 arsenical pump   26.8      36 0.00092   13.1   4.2   94   22-118    96-196 (507)
 69 PRK11043 inner membrane transp  26.0      37 0.00096   13.0  21.5   42  102-143   138-179 (401)
 70 PRK10406 alpha-ketoglutarate t  25.9      38 0.00096   13.0  19.5   45  103-147   169-220 (432)
 71 PRK02833 phosphate-starvation-  25.3      39 0.00099   12.9   4.8   62   80-144    65-127 (133)
 72 PRK11902 ampG muropeptide tran  23.8      41  0.0011   12.8  17.7   15  180-194   231-246 (402)
 73 pfam01790 LGT Prolipoprotein d  23.4      42  0.0011   12.7  13.5   43   79-121    25-67  (257)
 74 PRK11663 regulatory protein Uh  23.1      43  0.0011   12.7  17.3   39  105-143   158-196 (434)
 75 pfam07690 MFS_1 Major Facilita  23.0      43  0.0011   12.7  20.0   40  101-140   128-167 (345)
 76 TIGR00881 2A0104 phosphoglycer  22.9      43  0.0011   12.7   9.0   39  105-143   134-175 (404)
 77 TIGR02838 spore_V_AC stage V s  22.8      43  0.0011   12.6   3.4   57  149-208     9-66  (141)
 78 PRK09952 shikimate transporter  22.7      44  0.0011   12.6  20.4   44  103-146   170-220 (438)
 79 pfam03741 TerC Integral membra  21.7      46  0.0012   12.5  16.5   60   88-150    27-86  (184)
 80 pfam06699 PIG-F GPI biosynthes  20.4      49  0.0012   12.4   8.7   26  184-209    81-106 (190)

No 1  
>COG0730 Predicted permeases [General function prediction only]
Probab=100.00  E-value=5.6e-43  Score=248.39  Aligned_cols=241  Identities=27%  Similarity=0.351  Sum_probs=211.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             79999999999999999999984021999999999998526898236689999989999999967765788752885535
Q gi|254780993|r   19 VVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMK   98 (279)
Q Consensus        19 ~i~~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~   98 (279)
                      .....+.++++|+++|++.|++|+|||.+.+|.+.+++    +||    |.|.+||+.+..+++.++++.|+|+|++|||
T Consensus         3 ~~~~~~~~~~~g~~~g~i~g~~G~Ggg~i~~P~L~~~~----~~~----~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~   74 (258)
T COG0730           3 DLMTLLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLG----LPP----AAALGTSLLAVLFTSLSSALAYLKRGNVDWK   74 (258)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC----CCH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             18999999999999999987163451999999999961----789----9999999999999999999999992686199


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCCC--CCCC---CCHHHHHHHHHHHHHHH
Q ss_conf             6665456764699999776403663102235899999999997215787-7433--3323---40133211567667666
Q gi|254780993|r   99 ILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRL-YCER--KFPD---NYVKYIWGMVTGFLSGA  172 (279)
Q Consensus        99 ~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~-~~~~--~~~~---~~~~~~~g~~~G~~sgl  172 (279)
                      ...++.+++++|+.+|+++..++|++.++..++++++..+++++++++. +.++  ++.+   .......|+.+|+++|.
T Consensus        75 ~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~G~  154 (258)
T COG0730          75 LALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKAEDRAARLRPLLFALALLIGFLAGFLSGL  154 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999878788899999999999999999723223333221124640168999999999999983


Q ss_pred             HHCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             521126689999998-4898446346667888666778999998538764357451001899999999999999999999
Q gi|254780993|r  173 LGVGGGIFTNLLMLF-YGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLA  251 (279)
Q Consensus       173 ~GiGGG~l~vp~l~~-~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iG  251 (279)
                      +|+|||+..+|.+.. .+.|.+++++||....++.+..+...|...           .|++||+....+.+++++|+++|
T Consensus       155 ~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~-----------~g~~~~~~~~~l~~g~~~G~~lG  223 (258)
T COG0730         155 FGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFA-----------LGAVDWPLALLLAVGSILGAYLG  223 (258)
T ss_pred             CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             0317177899999997257337999999999999999999999998-----------47510989999999999999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999830899999999999999999872
Q gi|254780993|r  252 TKLSYMIGKKYLTIGFSMIMFTTSFVF  278 (279)
Q Consensus       252 a~l~~~l~~~~lk~~f~i~l~~v~~~m  278 (279)
                      +|+++|++++.+|+.+..+++.++++|
T Consensus       224 ~~l~~~~~~~~lr~~~~~~~~~~~~~~  250 (258)
T COG0730         224 ARLARRLSPKVLRRLFALVLLAVAIKL  250 (258)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999986799999999999999999999


No 2  
>PRK10621 hypothetical protein; Provisional
Probab=100.00  E-value=2.2e-41  Score=239.84  Aligned_cols=248  Identities=21%  Similarity=0.286  Sum_probs=219.4

Q ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11788624431799999999999999999999840219999999999985268982366899999899999999677657
Q gi|254780993|r    8 FSLMVFLSKDCVVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFM   87 (279)
Q Consensus         8 ~~~~~~~~~~~~i~~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~   87 (279)
                      |.+|.....+..+.  .+++.+|+++|++..+.| |||++.+|+|..    .|+||..    |.+||..+..+.+.++++
T Consensus         2 ~~~m~~~~~~p~~l--~lLf~~g~~AG~inaiAG-GGglIt~PaLl~----~Glpp~~----AnaTNk~a~~~g~~~a~~   70 (269)
T PRK10621          2 ETFMDLFMVSPLLL--GVLFFVAMLAGFIDSIAG-GGGLLTIPALMA----AGMSPAQ----ALATNKLQACGGSFSASL   70 (269)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHH----CCCCHHH----HHHHHHHHHHHHHHHHHH
T ss_conf             67999999629999--999999999998887706-618999999998----7998899----988748999977899999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCHHHHHHH
Q ss_conf             8875288553566654567646999997764036631022358999999999972157877433332---3401332115
Q gi|254780993|r   88 EHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFP---DNYVKYIWGM  164 (279)
Q Consensus        88 ~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~~---~~~~~~~~g~  164 (279)
                      +|+|++++|||...+..+.+.+|+.+|+++..++|+++++.++.++++..+++.+++++..++++++   ........++
T Consensus        71 ~~~r~~~~~~~~~~~~~~~~~iGa~~Ga~l~~~~~~~~f~~iv~~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (269)
T PRK10621         71 YFIRRKVVNLKDQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVICIGLYFLLMPKLGEEDRQRRLYGLPFALIAGG  150 (269)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99861467688999999999999999999999589999999999999999999994774675321132100079999999


Q ss_pred             HHHHHHHHHHCCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             6766766652112668999999-848984463466678886667789999985387643574510018999999999999
Q gi|254780993|r  165 VTGFLSGALGVGGGIFTNLLML-FYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPI  243 (279)
Q Consensus       165 ~~G~~sgl~GiGGG~l~vp~l~-~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~  243 (279)
                      .+|+++|.+|.|.|.+.++.+. ..|+|.++|.+++..+.+..++.+.+.|...|.            |||+..+++.++
T Consensus       151 ~iG~Y~Gffg~G~G~~~~~~l~~~~g~~l~~a~a~~~~l~~~~n~~a~~iF~~~G~------------V~W~~~l~ma~G  218 (269)
T PRK10621        151 CVGFYDGFFGPGAGSFYALAFVTLCGFNLAKSTAHAKVLNATSNIGGLLLFILGGK------------VIWATGFVMLVG  218 (269)
T ss_pred             HHHHHCCEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCE------------EHHHHHHHHHHH
T ss_conf             99997262056689999999999929988999999999999999999999993883------------179999999999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999830899999999999999999872
Q gi|254780993|r  244 SILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVF  278 (279)
Q Consensus       244 s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~m  278 (279)
                      +++|+++|+|++.|.+++.+|+.+.++.+.+++|+
T Consensus       219 ~~~Gg~lGa~~a~k~g~~~IR~~~ivv~~~l~ikL  253 (269)
T PRK10621        219 QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKL  253 (269)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998570889999999999999999


No 3  
>pfam01925 TauE Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.
Probab=100.00  E-value=2.9e-38  Score=223.06  Aligned_cols=232  Identities=31%  Similarity=0.470  Sum_probs=206.7

Q ss_pred             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99999999999998402199999999999852689823668999998999999996776578875288553566654567
Q gi|254780993|r   27 IVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFV  106 (279)
Q Consensus        27 ~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~  106 (279)
                      +.+++++|+++++.|.|||++.+|++.+++.    ||    +.|++++....+.++..+.+.|+|++++|||..+++.++
T Consensus         2 ~~~~~~~g~v~~~~G~G~~~i~~P~l~~~~~----~~----~~a~~~~~~~~i~~~~~~~~~~~~~~~v~~k~~~~~~~~   73 (236)
T pfam01925         2 LLAGLLAGFLAGLTGFGGGLIAVPLLLLLLG----PP----HVAVGTSLLAVLVTSLSGALAHRRRGNVDWRLALLLALG   73 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             8999999999999998899999999999987----79----999999999999999999999999088538999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             646999997764036631022358999999999972157877433--332340133211567667666521126689999
Q gi|254780993|r  107 LPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCER--KFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLL  184 (279)
Q Consensus       107 ~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~--~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~  184 (279)
                      +++|+.+|+++..++|+++++..++++++..+.+++++++.++++  ++.+++.....|...|+++|++|+|+|...+|+
T Consensus        74 ~iiG~~lG~~l~~~~~~~~l~~~ig~~li~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~G~~g~g~g~~~~~~  153 (236)
T pfam01925        74 GLLGALLGALLLLLLPGAVLKLLFGVLLLLAALLMLLRPRLAAAASRRPPGALALLLAGGLIGFLSGLFGIGGGFLLVPA  153 (236)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             99999999999998899999999999999999999970556544444565508999999999999511223353779999


Q ss_pred             HHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             998-4898446346667888666778999998538764357451001899999999999999999999999830899999
Q gi|254780993|r  185 MLF-YGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYL  263 (279)
Q Consensus       185 l~~-~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~l  263 (279)
                      +.+ .+.|.|++++|+..+.+..+..+.+.|...|.            +|+.....+.+++++|+++|+|+.+|+|++.+
T Consensus       154 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~~~~~iG~~lG~~l~~ki~~~~~  221 (236)
T pfam01925       154 LLLLLGLPLKKAVATSLLVILLSSLAALLGYALLGL------------VDWPLLLLLLPGALLGALLGARLARRLPPRLL  221 (236)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             999829999999999999999999999999997475------------15999999999999999999999988899999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999872
Q gi|254780993|r  264 TIGFSMIMFTTSFVF  278 (279)
Q Consensus       264 k~~f~i~l~~v~~~m  278 (279)
                      |+.+..+++.++++|
T Consensus       222 r~~~~~~l~~~gi~m  236 (236)
T pfam01925       222 RRLFAVLLLLVGLKL  236 (236)
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999999999879


No 4  
>COG0730 Predicted permeases [General function prediction only]
Probab=99.56  E-value=1.4e-13  Score=90.45  Aligned_cols=115  Identities=27%  Similarity=0.362  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf             9999999999999998402199999999999852689823668999998999999996776578875-288553566654
Q gi|254780993|r   25 LIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRR-HGTINMKILKDW  103 (279)
Q Consensus        25 ~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k-~~~i~~~~~~~l  103 (279)
                      .....|+.+|+.+|++|+|||...+|.+.+.   .+.|.    +.+++||.+.+..++..+...|.. ++.+||.....+
T Consensus       140 ~~~~~g~~~G~~~G~~G~GgG~~~vp~l~~~---~~~~~----~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l  212 (258)
T COG0730         140 LALLIGFLAGFLSGLFGVGGGFGIVPALLLL---LLLPL----KLAVATSLAIILNTASNGAALYLFALGAVDWPLALLL  212 (258)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH---CCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             9999999999999830317177899999997---25733----7999999999999999999999998475109899999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             5676469999977640366310223589999999999721578
Q gi|254780993|r  104 IFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDR  146 (279)
Q Consensus       104 ~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~  146 (279)
                      .+++++|+++|+++.++++++.++..+..+++..+.+++++..
T Consensus       213 ~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~~  255 (258)
T COG0730         213 AVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRGL  255 (258)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999998679999999999999999999999975


No 5  
>PRK10621 hypothetical protein; Provisional
Probab=99.44  E-value=2.1e-12  Score=84.17  Aligned_cols=120  Identities=12%  Similarity=0.097  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             99999999999999999984021999999999998526898236689999989999999967765788752885535666
Q gi|254780993|r   22 YICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILK  101 (279)
Q Consensus        22 ~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~  101 (279)
                      ........++.+|+-+|.||.|.|.+.++++...   .|.|.    +.|.+++......+++.+...|..+|++||+.+.
T Consensus       141 ~~~~~~~~~~~iG~Y~Gffg~G~G~~~~~~l~~~---~g~~l----~~a~a~~~~l~~~~n~~a~~iF~~~G~V~W~~~l  213 (269)
T PRK10621        141 GLPFALIAGGCVGFYDGFFGPGAGSFYALAFVTL---CGFNL----AKSTAHAKVLNATSNIGGLLLFILGGKVIWATGF  213 (269)
T ss_pred             CHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHH---CCCCH----HHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHH
T ss_conf             0079999999999972620566899999999999---29988----9999999999999999999999938831799999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             54567646999997764036631022358999999999972157877
Q gi|254780993|r  102 DWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLY  148 (279)
Q Consensus       102 ~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~  148 (279)
                      .++++.++|+++|+.++...+++++|.++.++.+.++++++++..-+
T Consensus       214 ~ma~G~~~Gg~lGa~~a~k~g~~~IR~~~ivv~~~l~ikL~~d~~g~  260 (269)
T PRK10621        214 VMLVGQFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHGQ  260 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             99999999999999999985708899999999999999999997357


No 6  
>pfam01925 TauE Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.
Probab=99.36  E-value=1e-11  Score=80.46  Aligned_cols=110  Identities=28%  Similarity=0.455  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             99999999999999984021999999999998526898236689999989999999967765788752885535666545
Q gi|254780993|r   25 LIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWI  104 (279)
Q Consensus        25 ~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~  104 (279)
                      .....|.++|+.+|++|+|||.+.+|.+.+.   .+.|++    .+++|+.....+++..+...|...+++||+....+.
T Consensus       127 ~~~~~g~~~G~~~G~~g~g~g~~~~~~~~~~---~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  199 (236)
T pfam01925       127 ALLLAGGLIGFLSGLFGIGGGFLLVPALLLL---LGLPLK----KAVATSLLVILLSSLAALLGYALLGLVDWPLLLLLL  199 (236)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH---CCCCHH----HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999999999995112233537799999998---299999----999999999999999999999974751599999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6764699999776403663102235899999999997
Q gi|254780993|r  105 FVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILM  141 (279)
Q Consensus       105 ~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~  141 (279)
                      ++..+|+++|..+...+|++.+|..+..++...++++
T Consensus       200 ~~~~iG~~lG~~l~~ki~~~~~r~~~~~~l~~~gi~m  236 (236)
T pfam01925       200 PGALLGALLGARLARRLPPRLLRRLFAVLLLLVGLKL  236 (236)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999988899999999999999999879


No 7  
>COG2119 Predicted membrane protein [Function unknown]
Probab=97.89  E-value=0.0011  Score=37.41  Aligned_cols=149  Identities=17%  Similarity=0.152  Sum_probs=93.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             28855356665456764699999776403663102235899999999997215787743333234013321156766766
Q gi|254780993|r   92 HGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSG  171 (279)
Q Consensus        92 ~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sg  171 (279)
                      +..+=-........--..++..|.+..+.+|++.+.+.-+..-+..+++++...+...++....+...            
T Consensus        33 ~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~~~~e~~~~~~~~------------  100 (190)
T COG2119          33 RWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKEDDEEAQAASPRG------------  100 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------------
T ss_conf             80037999999999999999998887514844579999999999999998066221311334455404------------


Q ss_pred             HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65211266899999984898446346667888666778999998538764357451001899999999999999999999
Q gi|254780993|r  172 ALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLA  251 (279)
Q Consensus       172 l~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iG  251 (279)
                         +=.-.+..-++.-.|-  |.-++|-             .  .+..  ++.+ |.   |..-..+.+.+++.+++..|
T Consensus       101 ---~f~~tfi~~FlaE~GD--KTQiATI-------------a--LaA~--~~~~-~~---V~~Gt~lg~~l~s~laVl~G  154 (190)
T COG2119         101 ---VFVTTFITFFLAELGD--KTQIATI-------------A--LAAD--YHSP-WA---VFAGTTLGMILASVLAVLLG  154 (190)
T ss_pred             ---HHHHHHHHHHHHHHCC--HHHHHHH-------------H--HHHC--CCCC-EE---EEHHHHHHHHHHHHHHHHHH
T ss_conf             ---8999999999999553--8899999-------------9--9603--7996-56---61634899999988999977


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999830899999999999999999872
Q gi|254780993|r  252 TKLSYMIGKKYLTIGFSMIMFTTSFVF  278 (279)
Q Consensus       252 a~l~~~l~~~~lk~~f~i~l~~v~~~m  278 (279)
                      .+.++|+|+|++++.=+++....+.+.
T Consensus       155 ~~ia~ki~~r~l~~~aallFl~fal~~  181 (190)
T COG2119         155 KLIAGKLPERLLRFIAALLFLIFALVL  181 (190)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             998711788999999999999999999


No 8  
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=97.78  E-value=0.0016  Score=36.39  Aligned_cols=177  Identities=16%  Similarity=0.111  Sum_probs=102.2

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             528855356665456764699999776403663102-2358999999999972157877433332340133211567667
Q gi|254780993|r   91 RHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFL-NKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFL  169 (279)
Q Consensus        91 k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l-~~~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~  169 (279)
                      |+++-|+|....+.++.+|...+|..+-..+++..- ....+..+++.++.+++.++.+.+++.+  .....-.+.+|..
T Consensus        79 ~~~~~~~~l~~~iiiatiP~~iiG~~~~~~i~~~~~~~~~i~~~lii~gilL~~~d~~~~~~~~~--~l~~~~a~~IGl~  156 (268)
T PRK00281         79 RGRSEDRRLLLLVIVATIPAVVLGLLFKDFIEEHLFSPWVVAIALIVGGILLIWAEKRKKVKDLD--DLTYKDALLIGLA  156 (268)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH--HCCHHHHHHHHHH
T ss_conf             45755589999999997379999999999899983487999999999999999999842679856--5999999999999


Q ss_pred             HH---HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66---652112668999999848984463466678886667789999985387643574510018999999999999999
Q gi|254780993|r  170 SG---ALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISIL  246 (279)
Q Consensus       170 sg---l~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~  246 (279)
                      -+   +=|+.=.-.+.-..+..|++.++|.--|-....|+-+.+..--.........       ..++...+.-.+.|.+
T Consensus       157 Q~lAliPGiSRSG~TI~a~l~lG~~r~~A~rfSFllsIP~ilga~~~~~~~~~~~~~-------~~~~~~~lig~~~sfi  229 (268)
T PRK00281        157 QCLALIPGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDLLKSGGVLS-------AADIPALAVGFVVAFV  229 (268)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHH
T ss_conf             993367875645699999999499889999999999999999999999999751154-------5569999999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999998308999999999999999998
Q gi|254780993|r  247 ITPLATKLSYMIGKKYLTIGFSMIMFTTSF  276 (279)
Q Consensus       247 ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~  276 (279)
                      .+++.-|...|.-+|.=-+.|++-.+.+|.
T Consensus       230 ~~~~sI~~ll~~~~~~~~~~F~iYri~lG~  259 (268)
T PRK00281        230 VALIAIKWLLKYIKRHSFTPFAIYRIVLGA  259 (268)
T ss_pred             HHHHHHHHHHHHHHHCCCEEHHHHHHHHHH
T ss_conf             999999999999988898127999999999


No 9  
>pfam02673 BacA Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol.
Probab=97.39  E-value=0.006  Score=33.37  Aligned_cols=183  Identities=17%  Similarity=0.148  Sum_probs=102.0

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             5788752885535666545676469999977640366310223-589999999999721578774333323401332115
Q gi|254780993|r   86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNK-AFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGM  164 (279)
Q Consensus        86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~-~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~  164 (279)
                      ..+..++++-++|....+.++.+|.+.+|..+-..+++..-.. ..+..+++.++.+++-++.+.+++.. +.....-.+
T Consensus        67 ~~~~~~~~~~~~~~~~~iiiatlP~~iiG~~~~~~i~~~~~~~~~i~~~lii~gilL~~~d~~~~~~~~~-~~~~~~~a~  145 (255)
T pfam02673        67 LLRSLRRDKPDRRLLLLIIIGTIPAGVVGLLFKDFIEALLRSPVVIAIALIVGGLLLLLAERLGKKRRTL-DDISLKDAL  145 (255)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHCCHHHHH
T ss_conf             8642025881368999999999889999999999999985388999999999999999999954377866-647899999


Q ss_pred             HHHHHHH---HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             6766766---6521126689999998489844634666788866677899999853876435745100189999999999
Q gi|254780993|r  165 VTGFLSG---ALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIIL  241 (279)
Q Consensus       165 ~~G~~sg---l~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~  241 (279)
                      .+|..-+   +=|+.=.-.+.-..+.+|++.++|.--|-....|+-..+.+--........+.       .++...+.-.
T Consensus       146 ~IGl~Q~lAliPGiSRSG~TI~a~lllG~~r~~A~~fSFllsIP~i~ga~~~~l~~~~~~~~~-------~~~~~l~~g~  218 (255)
T pfam02673       146 LIGLAQALALIPGVSRSGATITAGLLLGLDREAAARFSFLLAIPAILGAGLLELLKLFDLLSA-------DDLGPLLVGF  218 (255)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHH
T ss_conf             999999954678756445899999994999899999999999999999999999998710446-------5699999999


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999998308999999999999999998
Q gi|254780993|r  242 PISILITPLATKLSYMIGKKYLTIGFSMIMFTTSF  276 (279)
Q Consensus       242 ~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~  276 (279)
                      +.|.+-+++.-|.--|.-+|.=-+.|++-.+.+|+
T Consensus       219 i~Sfi~~~~sI~~ll~~~~~~~~~~F~iYri~lGi  253 (255)
T pfam02673       219 IVAFVVALLAIKWLLRFLKRHSFKPFAIYRIILGI  253 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH
T ss_conf             99999999999999999988898134989977995


No 10 
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=96.95  E-value=0.018  Score=30.82  Aligned_cols=178  Identities=12%  Similarity=0.069  Sum_probs=98.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             28855356665456764699999776403663102-235899999999997215787--743333234013321156766
Q gi|254780993|r   92 HGTINMKILKDWIFVLPITTVVTSLMISHVDKSFL-NKAFAIFCLLMGILMLKRDRL--YCERKFPDNYVKYIWGMVTGF  168 (279)
Q Consensus        92 ~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l-~~~f~v~ll~~a~~~~~~~~~--~~~~~~~~~~~~~~~g~~~G~  168 (279)
                      +++-++|....+.++.+|.+.+|..+-+.+++..- ....+..++..++.+++-++.  +++++ ..+.....-...+|.
T Consensus        81 ~~~~~~~l~~~liiatiP~~iiG~~~~~~i~~~~~~~~~ia~~lii~gilL~~ad~~~~~~~~~-~~~~i~~~~A~~IG~  159 (277)
T PRK12554         81 DKKSDFRFGWYLIIATIPAGVIGLLFKDRIEEVLFDLRIVAIALIVTGVLLWIADNLRRSRGRK-NDEDLTFKDAIIVGL  159 (277)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHCCHHHHHHHHH
T ss_conf             4664579999999999989999999999999996376999999999999999999975045778-742188999999999


Q ss_pred             HH---HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             76---665211266899999984898446346667888666778999998538764357451001899999999999999
Q gi|254780993|r  169 LS---GALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISI  245 (279)
Q Consensus       169 ~s---gl~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~  245 (279)
                      .-   -+=|+.=.-.+.-.-+..|++.+.|.--|-....|+-..+.+--......... .+     .++...+.-.+.+.
T Consensus       160 ~Q~lAliPGvSRSG~TI~~~l~~G~~r~~Aa~fSFLLsiP~i~ga~~l~~~~~~~~~~-~~-----~~~~~~lig~i~sf  233 (277)
T PRK12554        160 AQALALIPGISRSGATIIAGMLLGLTREAAARFSFLLAIPVSLGAGVLELPKIFHDPD-LG-----SLLIPYALAFIAAF  233 (277)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HH-----HHHHHHHHHHHHHH
T ss_conf             9995467875636589999999599999999999999999999999999999872244-06-----68999999999999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998308999999999999999998
Q gi|254780993|r  246 LITPLATKLSYMIGKKYLTIGFSMIMFTTSF  276 (279)
Q Consensus       246 ~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~  276 (279)
                      +.+++.-|+-.|.-+|.=-+.|+.-.+.+|+
T Consensus       234 i~~~~si~~ll~~l~~~~~~~F~~Yri~lG~  264 (277)
T PRK12554        234 IAAYLSVRWFMRFMAKGSLAYFAWYCIILGV  264 (277)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH
T ss_conf             9999999999999987898127999999999


No 11 
>pfam04018 DUF368 Domain of unknown function (DUF368). Predicted transmembrane domain of unknown function. Family members have between 6 and 9 predicted transmembrane segments.
Probab=96.72  E-value=0.028  Score=29.77  Aligned_cols=167  Identities=16%  Similarity=0.127  Sum_probs=87.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             288553566654567646999997764036631----0223589999999999721578774333323401332115676
Q gi|254780993|r   92 HGTINMKILKDWIFVLPITTVVTSLMISHVDKS----FLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTG  167 (279)
Q Consensus        92 ~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~----~l~~~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G  167 (279)
                      .+++|++...+++.+...+....+.+.+++=++    ....++++  +...+..+.|+.++   ++.++......|...+
T Consensus        49 ~~~~~~~fLl~l~~G~~~~i~~~s~~i~~ll~~yp~~~~~fF~GL--Il~Si~~l~k~~~~---~~~~~~i~~~~g~~i~  123 (250)
T pfam04018        49 WKHINGNFLLPLGLGILTSILSLAKLISYLLENYPVPTWSFFFGL--ILASIPFLLKQVKK---WSPGRILLFLLGAAIA  123 (250)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCC---CCHHHHHHHHHHHHHH
T ss_conf             996057999999999999999999999999996699999999999--99999999987500---4499999999999999


Q ss_pred             HHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             67666521126689999998489844634666788866677899999853876435745100189999999999999999
Q gi|254780993|r  168 FLSGALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILI  247 (279)
Q Consensus       168 ~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~g  247 (279)
                      +.-......-..-....+-..|     +++  ...+..=.++|+.--+.-|......  .++...|++...++.+|...|
T Consensus       124 ~~~~~~~~~~~~~~~~~lf~~G-----~iA--~~AMILPGISGS~iLLilG~Y~~vi--~ai~~~~l~~L~~f~~G~iiG  194 (250)
T pfam04018       124 YLITLLPPAASPPSLLFLFFAG-----AIA--ICAMILPGISGSFILLLLGLYEPVL--GAVSELDLPILLVFGLGAVIG  194 (250)
T ss_pred             HHHHHCCCCCCCCCHHHHHHHH-----HHH--HHHHHHCCCCHHHHHHHHHHHHHHH--HHHHHCCHHHHHHHHHHHHHH
T ss_conf             9999579777885299999999-----999--9998805640889999998089999--999863489999999999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             9999999830899999999999999
Q gi|254780993|r  248 TPLATKLSYMIGKKYLTIGFSMIMF  272 (279)
Q Consensus       248 a~iGa~l~~~l~~~~lk~~f~i~l~  272 (279)
                      -..-+|+-+++=+|.-+..++.+.=
T Consensus       195 l~~~skii~~ll~~~~~~t~~~i~G  219 (250)
T pfam04018       195 LLSFSKLLSYLLKKYRDATLAFLTG  219 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999819999999999


No 12 
>PRK10739 putative dITP- and XTP- hydrolase; Provisional
Probab=96.45  E-value=0.043  Score=28.76  Aligned_cols=72  Identities=15%  Similarity=0.151  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             996776578875288553566654567646999997764036--631022358999999999972157877433
Q gi|254780993|r   80 PTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV--DKSFLNKAFAIFCLLMGILMLKRDRLYCER  151 (279)
Q Consensus        80 ~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i--~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~  151 (279)
                      +.++.......+|+.+-+|....-..-....++.|.++.+.+  +-+.++..=|+.++..+++|++.++.++++
T Consensus        24 Flslt~~~~~~~r~~ia~~a~~~a~~il~~F~~~G~~il~~fgIsi~afrIaGGilL~~ia~~Ml~~~~~~~~~   97 (197)
T PRK10739         24 FMSVLKHLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRAETVSISGGIILFLIAIKMIFPSAEGNSS   97 (197)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99984799999999999999999999999999989999999499889999987899999999986266656655


No 13 
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=95.73  E-value=0.1  Score=26.82  Aligned_cols=128  Identities=10%  Similarity=0.039  Sum_probs=68.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHH-HH
Q ss_conf             10223589999999999721578774333323401332115676676665211266899999984898446346667-88
Q gi|254780993|r  124 SFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATATSA-GV  202 (279)
Q Consensus       124 ~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS~-~~  202 (279)
                      ..+|++=+.++++++++.++++...+.++..++ ....-.+.-|++..+.-.=.-.+..-++-.+ .|......+.. ..
T Consensus        73 ~~lk~~Ga~YLi~Lg~~~~r~~~~~~~~~~~~~-~~~~~~f~~G~l~~l~NPKa~~Ff~a~~pqF-i~~~~~~~~q~~~l  150 (205)
T PRK10520         73 EVLKWAGAAYLIWLGIQQWRAAGAIDLHTLAST-QSRRKLFKRAVFVNLTNPKSIVFLAALFPQF-IMPQQPQLMQYLVL  150 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHH
T ss_conf             999999999999999999852566775545668-7666899999999925919999999998777-18985249999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86667789999985387643574510018999999999999999999999998308999999999999999998729
Q gi|254780993|r  203 SALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA  279 (279)
Q Consensus       203 ~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~ma  279 (279)
                      .........                          .....-+..+..++.++.++-..|+++|+.+.+++..|.++|
T Consensus       151 ~~~~~~~~~--------------------------~~~~~~a~~~~~~~~~l~~~~~~~~~nrv~g~~li~~g~~La  201 (205)
T PRK10520        151 GVTTVVVDI--------------------------IVMIGYATLAQRIARWIKGPKQMKALNKIFGSLFMLVGALLA  201 (205)
T ss_pred             HHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999--------------------------999999999999999985949999999999999999999998


No 14 
>pfam01810 LysE LysE type translocator. This family consists of various hypothetical proteins and an l-lysine exporter LysE from Corynebacterium glutamicum which is proposed to be the first of a novel family of translocators. LysE exports l-lysine from the cell into the surrounding medium and is predicted to span the membrane six times. The physiological function of the exporter is to excrete excess l-Lysine as a result of natural flux imbalances or peptide hydrolysis; and also after artificial deregulation of l-Lysine biosynthesis as used by the biotechnology. industry for the production of l-lysine.
Probab=95.56  E-value=0.12  Score=26.44  Aligned_cols=131  Identities=13%  Similarity=0.085  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             31022358999999999972157877433332340133211567667666521126689999998489844634666788
Q gi|254780993|r  123 KSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATATSAGV  202 (279)
Q Consensus       123 ~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS~~~  202 (279)
                      ...+++.=+.++++.++++++.++.+.+++.++......-.+..|+...+.-.-.-.+.+-++-.+ .+..+.. .....
T Consensus        59 ~~~l~~~G~~yL~ylg~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~~~llNPK~~lf~~~~~~~f-i~~~~~~-~~~~~  136 (191)
T pfam01810        59 FTVLKLGGGAYLLYLGILTLRAAWSPKSLKLSSSEASLKKSFLRGLLVSLLNPKAILFWLSVGGSF-IGKNQYG-GAQRI  136 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCCCH-HHHHH
T ss_conf             999999999999999999998245654333356675488999999999800969999999999997-0776650-78999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             86667789999985387643574510018999999999999999999999998308999999999999999998729
Q gi|254780993|r  203 SALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA  279 (279)
Q Consensus       203 ~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~ma  279 (279)
                      .+. ......                    ++   .....-+..++....++..+-..|++.++.+.+++..|++++
T Consensus       137 ~~~-~~~~~~--------------------~~---~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~g~~li~~gi~l~  189 (191)
T pfam01810       137 IFA-AGLILA--------------------SL---IWFSFLAFLASRLARRFKYKKLQRIINAIAGALLIGFGVYLL  189 (191)
T ss_pred             HHH-HHHHHH--------------------HH---HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999-999999--------------------99---999999999999999970867999999999999999999998


No 15 
>PRK10995 multiple drug resistance protein MarC; Provisional
Probab=95.38  E-value=0.14  Score=26.11  Aligned_cols=68  Identities=10%  Similarity=0.054  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9996776578875288553566654567646999997764036--6310223589999999999721578
Q gi|254780993|r   79 APTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV--DKSFLNKAFAIFCLLMGILMLKRDR  146 (279)
Q Consensus        79 ~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i--~~~~l~~~f~v~ll~~a~~~~~~~~  146 (279)
                      ++.++..-..+.+|+.+-+|.......-.+..++.|.++.+.+  +-..++..=|+.++..++.|++.++
T Consensus        27 iFlslt~~~~~~~r~~ia~~a~~~a~~iLl~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ia~~Ml~~~~   96 (222)
T PRK10995         27 LFLGLSGNMTSEERNRQSLMASVYVFAIMMVAFYAGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQ   96 (222)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999848999999999999999999999999999899999996998999999999999999999853555


No 16 
>PRK11111 hypothetical protein; Provisional
Probab=95.07  E-value=0.17  Score=25.56  Aligned_cols=65  Identities=12%  Similarity=0.142  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             96776578875288553566654567646999997764036--631022358999999999972157
Q gi|254780993|r   81 TSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV--DKSFLNKAFAIFCLLMGILMLKRD  145 (279)
Q Consensus        81 ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i--~~~~l~~~f~v~ll~~a~~~~~~~  145 (279)
                      -++..-..+.+|+++-+|.......-.....+.|.++.+.+  +-+.++..=|+.++..+++|++.+
T Consensus        31 l~lt~~~~~~~r~~ia~~a~~~a~~il~~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~   97 (214)
T PRK11111         31 ISMTSHQTAAERNKTNLTANFSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVSIAMSMISGK   97 (214)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9996799999999999999999999999999988999999699899999994999999999986486


No 17 
>pfam01914 MarC MarC family integral membrane protein. Integral membrane protein family that includes the antibiotic resistance protein MarC. These proteins may be transporters.
Probab=95.03  E-value=0.18  Score=25.50  Aligned_cols=69  Identities=16%  Similarity=0.079  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             996776578875288553566654567646999997764036--631022358999999999972157877
Q gi|254780993|r   80 PTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV--DKSFLNKAFAIFCLLMGILMLKRDRLY  148 (279)
Q Consensus        80 ~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i--~~~~l~~~f~v~ll~~a~~~~~~~~~~  148 (279)
                      +.++..-....+|+.+-+|.......-.+..++.|.++.+.+  +-+.++..=|+.++..+++|++.++.+
T Consensus        24 fl~lt~~~~~~~r~~ia~~a~~~a~~il~~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~ml~~~~~~   94 (203)
T pfam01914        24 FISLTENYPAEERKRIILRASIIAFLILLLFLVFGKLILKLFGISIDAFRIAGGILLFLIAIDMLFGKQSK   94 (203)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99985899999999999999999999999999999999999688799999982899999999996586553


No 18 
>TIGR00427 TIGR00427 conserved hypothetical protein TIGR00427; InterPro: IPR002771   Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. .
Probab=94.92  E-value=0.19  Score=25.33  Aligned_cols=167  Identities=15%  Similarity=0.092  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CC
Q ss_conf             99967765788752885535666545676469999977640366--3102235899999999997215787743333-23
Q gi|254780993|r   79 APTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVD--KSFLNKAFAIFCLLMGILMLKRDRLYCERKF-PD  155 (279)
Q Consensus        79 ~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~--~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~-~~  155 (279)
                      ++-++...+...+|+++++|....-..--....+.|.++.++.+  =+.+|..=|++++..+..|+.-|+.++++++ .+
T Consensus        29 iFi~LTe~y~~~~R~~i~kkA~I~~~~IL~~f~~fG~~Il~~FGIsIdafriAGGILlf~Ia~dml~gK~~~~~~~k~~E  108 (206)
T TIGR00427        29 IFISLTESYTAEEREKIAKKAVISAFVILLIFLLFGDLILKYFGISIDAFRIAGGILLFLIALDMLSGKESEKKKHKHDE  108 (206)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHH
T ss_conf             22114888877899999899999999999999987457886608727898998899999999999840255045204134


Q ss_pred             CCH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf             401---33211567667666521126689999998489844634666788866677899999853876435745100189
Q gi|254780993|r  156 NYV---KYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFV  232 (279)
Q Consensus       156 ~~~---~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v  232 (279)
                      +..   .-.++..-=-+==+.|.  |.+..-....   ..++.++.-..+++-+++.-.++|..                
T Consensus       109 ~~e~~~~dsI~v~PLA~PL~aGP--GaIt~~mvl~---~~~~~I~~k~~V~l~Ial~~~~~~l~----------------  167 (206)
T TIGR00427       109 KEESKEIDSIAVVPLALPLIAGP--GAITATMVLI---AKASDIGEKFLVVLAIALVLLITFLL----------------  167 (206)
T ss_pred             HHHHHHHHHHCCCCHHHHHCCCC--CHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_conf             78644654102221245420365--1699999999---70330899999999999999999999----------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999830899999999999999999872
Q gi|254780993|r  233 NIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVF  278 (279)
Q Consensus       233 ~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~m  278 (279)
                                  +.-+..=.|..+|..-+.+-|.++.+|.++|+.|
T Consensus       168 ------------~~~~~~i~~~lg~~Gin~~tRimGL~L~AiaV~~  201 (206)
T TIGR00427       168 ------------FLYAAFIIRRLGRTGINVITRIMGLLLAAIAVEF  201 (206)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ------------9876899988623018899999999999988887


No 19 
>PRK11469 hypothetical protein; Provisional
Probab=93.46  E-value=0.39  Score=23.63  Aligned_cols=36  Identities=17%  Similarity=0.130  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999830899999999999999999872
Q gi|254780993|r  242 PISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVF  278 (279)
Q Consensus       242 ~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~m  278 (279)
                      +.+..|..+|.|+.+++.+ +-+.+=+++++.+++|+
T Consensus       164 ~~s~~Gv~lG~~~G~~~g~-~Aei~GG~VLI~IGlki  199 (206)
T PRK11469        164 IMSTLGMMVGRFIGSIIGK-KAEILGGLVLIGIGVQI  199 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf             9999999999998898701-99999999999999999


No 20 
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=92.70  E-value=0.51  Score=22.99  Aligned_cols=55  Identities=20%  Similarity=0.253  Sum_probs=28.0

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHH-H-HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             84898446346667888666778-9-99998538764357451001899999999999
Q gi|254780993|r  187 FYGASIYKATATSAGVSALIAFP-A-LLVRIYSGWGLNGLPPWSLGFVNIGAVLIILP  242 (279)
Q Consensus       187 ~~g~~~~~avgTS~~~~~~~a~~-g-~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~  242 (279)
                      ...+.+|+|+||+....-..+-. | +..-...|...+. ..|.-+|+-+.+...+..
T Consensus       371 a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~-~gW~g~Fi~~~~~a~l~~  427 (448)
T COG2271         371 AAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT-WGWDGGFIVLSIAALLAI  427 (448)
T ss_pred             HHCCCCHHHCCCHHCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHHHHH
T ss_conf             842651743010202033488877488607763046753-687515999999999999


No 21 
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=92.38  E-value=0.57  Score=22.76  Aligned_cols=159  Identities=14%  Similarity=0.127  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCC
Q ss_conf             99677657887528855356665456764699999776403--663102235899999999997215787743333-234
Q gi|254780993|r   80 PTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH--VDKSFLNKAFAIFCLLMGILMLKRDRLYCERKF-PDN  156 (279)
Q Consensus        80 ~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~--i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~-~~~  156 (279)
                      +.+...-+.-.+|+++.+|....-..........|.++.+.  ++-+.++..=|+.+...+++|++.++.+.++++ ++.
T Consensus        27 f~slt~~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~~~~~~~~~e~~~  106 (203)
T COG2095          27 FISLTKGLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGPTSRPKKKREEGQ  106 (203)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             99997689999999999999999999999999999999999688667778740498999999995687677777866576


Q ss_pred             C-HHHHHHHHHHHHHHHHHCCHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf             0-1332115676676665211266899999--984898446346667888666778999998538764357451001899
Q gi|254780993|r  157 Y-VKYIWGMVTGFLSGALGVGGGIFTNLLM--LFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVN  233 (279)
Q Consensus       157 ~-~~~~~g~~~G~~sgl~GiGGG~l~vp~l--~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~  233 (279)
                      . .....-...   =-+.|.  |.+..-..  ...+.++...+.+       +.+...+.|                   
T Consensus       107 ~~~iaivPLA~---PliaGP--g~Ist~i~~~~~~~~~~~~~~~~-------i~~~~~~~~-------------------  155 (203)
T COG2095         107 EDSIAIVPLAI---PLIAGP--GTIATVIVLSSQYGNSKLAVVLA-------ILLASLLTY-------------------  155 (203)
T ss_pred             CCCEEEECCCC---CCCCCC--HHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHHH-------------------
T ss_conf             57802544657---553475--99999999981357440999999-------999999999-------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999999830899999999999999999872
Q gi|254780993|r  234 IGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVF  278 (279)
Q Consensus       234 ~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~m  278 (279)
                               ..+.-+..=.|+..+..-+.+.|+++.++..+|++|
T Consensus       156 ---------~~l~~s~~i~r~lG~~G~~vl~RimGllL~al~vq~  191 (203)
T COG2095         156 ---------LILLSSSRIMRLLGKTGLNALTRIMGLLLAALGVQM  191 (203)
T ss_pred             ---------HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---------999988999999778889999999999999999999


No 22 
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=92.33  E-value=0.58  Score=22.72  Aligned_cols=89  Identities=16%  Similarity=0.185  Sum_probs=41.4

Q ss_pred             HHHHHCCHHHHHHHHHH--HCCCCH---HHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             66652112668999999--848984---463466678886667789999-985387643574510018999999999999
Q gi|254780993|r  170 SGALGVGGGIFTNLLML--FYGASI---YKATATSAGVSALIAFPALLV-RIYSGWGLNGLPPWSLGFVNIGAVLIILPI  243 (279)
Q Consensus       170 sgl~GiGGG~l~vp~l~--~~g~~~---~~avgTS~~~~~~~a~~g~i~-~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~  243 (279)
                      -.++|+.||.+.||+-.  ...-|.   -+.+|.++.+....-+.+++. ......      .++..       -.+...
T Consensus       342 l~~~g~~gGlfiVPL~A~iQ~~a~~~~r~rviAanNiln~~~Mv~~~~~~~~l~~~------~~s~~-------~~f~~~  408 (1139)
T PRK06814        342 LFFLAIIGGLYIVPLFAALQAWANPAHRARVIAANNVINAIFMVGGTIILAVLQAL------GFSIP-------WILLFL  408 (1139)
T ss_pred             HHHHHHHCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHH-------HHHHHH
T ss_conf             99999745004522589988528876667877999999999999999999999983------98899-------999999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             9999999999983089999999999999
Q gi|254780993|r  244 SILITPLATKLSYMIGKKYLTIGFSMIM  271 (279)
Q Consensus       244 s~~ga~iGa~l~~~l~~~~lk~~f~i~l  271 (279)
                      ++.........-..+|+..+|-++-.++
T Consensus       409 ~~~~~~~~~y~~~~lP~~~~R~~~~~l~  436 (1139)
T PRK06814        409 ALANLIVAIYILKLLPTNLLRDIFSILF  436 (1139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999808999999999999


No 23 
>COG1971 Predicted membrane protein [Function unknown]
Probab=91.68  E-value=0.69  Score=22.30  Aligned_cols=79  Identities=10%  Similarity=0.084  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99989999999967765788752885535666545676469999977640366---310223589999999999721578
Q gi|254780993|r   70 AMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVD---KSFLNKAFAIFCLLMGILMLKRDR  146 (279)
Q Consensus        70 AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~---~~~l~~~f~v~ll~~a~~~~~~~~  146 (279)
                      |.+-|+=+..++-..+..++..+-+-..+.+...+..-.+...+|.+....++   .++=+++=.+.+...+.+|+...-
T Consensus        10 A~alsmDAFav~l~~G~~~~k~~~~~~L~ia~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f   89 (190)
T COG1971          10 AIALSMDAFAVSLGKGLAKHKIRFKEALVIALIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGF   89 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99972169999998315642510899999999999999999999999999999999999999999999999999999980


Q ss_pred             CC
Q ss_conf             77
Q gi|254780993|r  147 LY  148 (279)
Q Consensus       147 ~~  148 (279)
                      ++
T Consensus        90 ~~   91 (190)
T COG1971          90 KN   91 (190)
T ss_pred             CH
T ss_conf             35


No 24 
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=91.04  E-value=0.81  Score=21.93  Aligned_cols=170  Identities=16%  Similarity=0.188  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHH--
Q ss_conf             3566654567646999997764036631022-35899999999997215787743-3332340133211567667666--
Q gi|254780993|r   97 MKILKDWIFVLPITTVVTSLMISHVDKSFLN-KAFAIFCLLMGILMLKRDRLYCE-RKFPDNYVKYIWGMVTGFLSGA--  172 (279)
Q Consensus        97 ~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~-~~f~v~ll~~a~~~~~~~~~~~~-~~~~~~~~~~~~g~~~G~~sgl--  172 (279)
                      ||......++.+|.+++|..+-.++++.... ...+..+++.++.++.-++.+.+ +.+.......--.+.+|..-.+  
T Consensus        84 ~~l~l~ilvatiPa~v~Gl~~~d~i~~~l~~~~~va~~lIv~gi~li~~e~~~~~~~~~~~~~l~~~da~~IGlaQ~lAl  163 (270)
T COG1968          84 FRLWLKILVATIPAVVLGLLFKDFIKSHLFNPRVVAIALIVGGILLILAEKLNKKPRLRDLDDLTLRDALIIGLAQCLAL  163 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHH
T ss_conf             99999999999818886677998899871570899999999999999999844355768753289999999999999987


Q ss_pred             -HHCC--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -5211--2668999999848984463466678886667789999985387643574510018999999999999999999
Q gi|254780993|r  173 -LGVG--GGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITP  249 (279)
Q Consensus       173 -~GiG--GG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~  249 (279)
                       =|+.  |.++  -....+|++.+.|.--|=....|+...+..--....  .+     .....|++....=.+.+++-+.
T Consensus       164 ~PG~SRSGaTI--~~~lllG~~r~~AaefSFlLaIP~m~GA~~l~l~k~--~~-----~~~~~~~~~l~vg~i~AFvv~~  234 (270)
T COG1968         164 IPGTSRSGATI--SGGLLLGLSREAAAEFSFLLAIPAMFGASALDLFKS--GD-----ALSAADLPILLVGFIVAFVVSL  234 (270)
T ss_pred             CCCCCCCHHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_conf             57888638999--999991888988999979989889999999999862--01-----0002106999999999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999830899999999999999999
Q gi|254780993|r  250 LATKLSYMIGKKYLTIGFSMIMFTTS  275 (279)
Q Consensus       250 iGa~l~~~l~~~~lk~~f~i~l~~v~  275 (279)
                      +..|.-.|.=+|+=-..|+...+.+|
T Consensus       235 ~~I~~ll~~i~~~~~~~F~~Yrivlg  260 (270)
T COG1968         235 IAIKFLLRFIKRHSFIPFAIYRIVLG  260 (270)
T ss_pred             HHHHHHHHHHHHCCCEEHHHHHHHHH
T ss_conf             99999999998689702179999999


No 25 
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=90.27  E-value=0.96  Score=21.54  Aligned_cols=15  Identities=27%  Similarity=0.328  Sum_probs=9.7

Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             898446346667888
Q gi|254780993|r  189 GASIYKATATSAGVS  203 (279)
Q Consensus       189 g~~~~~avgTS~~~~  203 (279)
                      .+-+|+|+||+....
T Consensus       377 ~~~pk~a~gta~G~~  391 (463)
T PRK09556        377 GFVPKKAIGVADGIK  391 (463)
T ss_pred             HHHCHHHHHHHHHHH
T ss_conf             850453554544121


No 26 
>pfam01169 UPF0016 Uncharacterized protein family UPF0016. This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions.
Probab=89.23  E-value=1.2  Score=21.09  Aligned_cols=43  Identities=21%  Similarity=0.277  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999999983089999999999999999
Q gi|254780993|r  232 VNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTT  274 (279)
Q Consensus       232 v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v  274 (279)
                      |.+-....+...+.+++.+|.++++++|++++|++-+++.+..
T Consensus        35 V~~G~~~al~~~~~lav~~G~~l~~~lp~~~i~~~a~~lFl~f   77 (78)
T pfam01169        35 VFLGATLALLLATALAVLLGRWLATLLPPRVLHFVAGVLFLAF   77 (78)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             8998999999999999999999997789999999999999960


No 27 
>PRK03699 hypothetical protein; Provisional
Probab=89.02  E-value=1.2  Score=21.00  Aligned_cols=122  Identities=11%  Similarity=0.126  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HHCCCCHHHHHHH----HHHH--HHHHHHHHHHHHHHHHHH--
Q ss_conf             999999999999999999984021999999999998-5268982366899----9998--999999996776578875--
Q gi|254780993|r   21 DYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAF-QLMGIDDSICMHV----AMGT--SLGVIAPTSVMSFMEHRR--   91 (279)
Q Consensus        21 ~~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f-~~~g~~~~~~~~~----AvgT--sl~~~~~ts~~~~~~~~k--   91 (279)
                      -.-+-.++..+++|.+..-+|...-++.-..++.+. -...+.|++..-.    -.|.  .......+...+.....|  
T Consensus        50 ~~~iG~li~~~~~g~L~~k~G~k~~l~~g~~l~~i~~l~~~~~~s~~~l~v~~fl~Glg~G~~~~~~~~~i~~~~~~~~r  129 (394)
T PRK03699         50 FLNAGILISIFLNAWLMEIIPLKRQLRFGFILMVLAVAGLMFSHSLALFSIAMFVLGLVSGITMSIGTFLITHVYEGRQR  129 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             99999999999999999995950999999999999999999815299999999999867899998899999997060078


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             2885535666545676469999977640-366310223589999999999721
Q gi|254780993|r   92 HGTINMKILKDWIFVLPITTVVTSLMIS-HVDKSFLNKAFAIFCLLMGILMLK  143 (279)
Q Consensus        92 ~~~i~~~~~~~l~~~~~~Ga~lGa~l~~-~i~~~~l~~~f~v~ll~~a~~~~~  143 (279)
                      ..+..+.. ..++.++.++..+.+++.. ..+=++.-.+.++..+......++
T Consensus       130 ~~~l~~~~-~~f~vGa~i~Pli~~~ll~~~~~W~~~y~~~~~~~~~~~~~~~~  181 (394)
T PRK03699        130 GSRLLFTD-SFFSMAGMIFPIIAAYLLARSIEWYWVYLCIGLVAVAIFILTLF  181 (394)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999-99988999999999999856998899999999999999999998


No 28 
>pfam03596 Cad Cadmium resistance transporter.
Probab=88.63  E-value=0.84  Score=21.84  Aligned_cols=56  Identities=13%  Similarity=0.162  Sum_probs=41.0

Q ss_pred             CHHHHHHHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             535666545676-46999997764036631022358999999999972157877433
Q gi|254780993|r   96 NMKILKDWIFVL-PITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCER  151 (279)
Q Consensus        96 ~~~~~~~l~~~~-~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~  151 (279)
                      +.-.+-.++... +..+..++.....+|++|+.-.+++.-+..+++.+++.+.++++
T Consensus        27 ~IviGqylGf~~Lv~~Sl~~a~g~~~ip~~wilGlLGliPi~lGi~~~~~~~~~~~~   83 (192)
T pfam03596        27 HIYIGQYLGSVALVLVSLLFAFVLNLVPEKWILGLLGLIPIYLGIKVLIKGDDDDEE   83 (192)
T ss_pred             EEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             888447877999999999999998747999999987589999999999727665513


No 29 
>TIGR00712 glpT glycerol-3-phosphate transporter; InterPro: IPR005267    This family includes very hydrophobic proteins, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. ; GO: 0015169 glycerol-3-phosphate transmembrane transporter activity, 0015794 glycerol-3-phosphate transport, 0016021 integral to membrane.
Probab=88.43  E-value=0.98  Score=21.48  Aligned_cols=111  Identities=15%  Similarity=0.090  Sum_probs=62.8

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHH-HHHHCCCCCCCCC-CC----CCC-
Q ss_conf             5788752885535666545676469999977640366--3102235899999999-9972157877433-33----234-
Q gi|254780993|r   86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVD--KSFLNKAFAIFCLLMG-ILMLKRDRLYCER-KF----PDN-  156 (279)
Q Consensus        86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~--~~~l~~~f~v~ll~~a-~~~~~~~~~~~~~-~~----~~~-  156 (279)
                      -.+|+.-++-+|...+ .-..++||+++=.|+++.+=  .+-..-++-..+...| +....++-.++.+ .+    ..+ 
T Consensus       295 EvK~F~~~~s~WaY~l-YEyAgiPGTlLCGW~SDk~Fkg~Rg~~Gv~FM~lv~~Av~vYW~NPAgpeaela~y~awyeNP  373 (468)
T TIGR00712       295 EVKHFSLEDSAWAYFL-YEYAGIPGTLLCGWVSDKVFKGKRGATGVLFMILVTIAVVVYWLNPAGPEAELANYSAWYENP  373 (468)
T ss_pred             HHCCCCCCCCCHHHHH-HHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCH
T ss_conf             4114576765146677-676426410002124300002464205789999999998887437997403566545552270


Q ss_pred             --CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             --01332115676676665211266899999984898446346667888
Q gi|254780993|r  157 --YVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATATSAGVS  203 (279)
Q Consensus       157 --~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~  203 (279)
                        ..-.+.-..+||+-  -    |+.+.--|..+.+-+|||.||++...
T Consensus       374 y~lvD~i~~~~IGFLI--Y----GPVMLIGL~AleLAPKKAAGTAAG~T  416 (468)
T TIGR00712       374 YQLVDFILLIVIGFLI--Y----GPVMLIGLHALELAPKKAAGTAAGFT  416 (468)
T ss_pred             HHHHHHHHHHHHHHHH--H----HHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             5789899999988887--5----47999988897406740111210034


No 30 
>TIGR00711 efflux_EmrB drug resistance MFS transporter, drug:H+ antiporter-1 (14 Spanner) (DHA2) family; InterPro: IPR004638   This subfamily of drug efflux proteins, a part of the major facilitator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in Escherichia coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.; GO: 0006810 transport, 0016021 integral to membrane.
Probab=86.16  E-value=1.8  Score=20.04  Aligned_cols=40  Identities=23%  Similarity=0.448  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999-983089999999999999999987
Q gi|254780993|r  237 VLIILPISILITPLATK-LSYMIGKKYLTIGFSMIMFTTSFV  277 (279)
Q Consensus       237 ~~~i~~~s~~ga~iGa~-l~~~l~~~~lk~~f~i~l~~v~~~  277 (279)
                      ..+.++...+.+|+.-| +.+|.++|.+- ..++++.+++.+
T Consensus       301 ~~P~gl~~~l~sPIaG~~~~~k~~~R~l~-~ig~~~~a~~~y  341 (501)
T TIGR00711       301 ILPVGLAPLLSSPIAGRMLGDKIDPRLLV-TIGLILYAVGFY  341 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHH
T ss_conf             98899999997079999984146806899-999999999998


No 31 
>PRK03545 sugar efflux transporter; Provisional
Probab=83.34  E-value=2.5  Score=19.33  Aligned_cols=46  Identities=9%  Similarity=0.022  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             6665456764699999776403663102235899999999997215
Q gi|254780993|r   99 ILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKR  144 (279)
Q Consensus        99 ~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~  144 (279)
                      ...-+..+.+.|..+|.++.++.+=+..-...++..+...+...+.
T Consensus       138 v~~G~slg~vlG~plg~~l~~~~gWr~~F~~~~vl~~~~~l~~~~~  183 (390)
T PRK03545        138 LATGTALAMVLGLPLGRVVGQALGWRTTFLAIGGVALITLLLLIKL  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999976448999886280899999999999999999997


No 32 
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily; InterPro: IPR004812   The drug resistance transporter Bcr/CflA proteins are predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in Escherichia coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=82.73  E-value=2.6  Score=19.19  Aligned_cols=170  Identities=14%  Similarity=0.191  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-CCCCCH---HHHHHHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             9998999999996776578875-288553---566654567646999997--7640366310223589999999999721
Q gi|254780993|r   70 AMGTSLGVIAPTSVMSFMEHRR-HGTINM---KILKDWIFVLPITTVVTS--LMISHVDKSFLNKAFAIFCLLMGILMLK  143 (279)
Q Consensus        70 AvgTsl~~~~~ts~~~~~~~~k-~~~i~~---~~~~~l~~~~~~Ga~lGa--~l~~~i~~~~l~~~f~v~ll~~a~~~~~  143 (279)
                      |.+.|.+.++-.++.  +-.|. +.++|+   -...+....=.+|..+|+  |+..|++=+.+-.++.+..+++....++
T Consensus       104 a~gasA~~V~~~Alv--RD~Y~G~~e~s~~~s~l~~~~~~~P~~aP~~Ggai~~~~~l~WhaIF~~L~l~~~~l~a~~f~  181 (400)
T TIGR00710       104 AFGASAALVISQALV--RDIYPGREELSKIYSILMLVLALAPAVAPLIGGAIYVLVFLSWHAIFAVLSLIGILLSALIFF  181 (400)
T ss_pred             HHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999989999999888--502032578999999999999999878888869999998520999999999999999999998


Q ss_pred             --CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             --578774333323401332115676676665211266899999--9848984463466678886667789999985387
Q gi|254780993|r  144 --RDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLM--LFYGASIYKATATSAGVSALIAFPALLVRIYSGW  219 (279)
Q Consensus       144 --~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l--~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~  219 (279)
                        ++.++++++.|.+...                -...+..+.=  ++.++-.-.+-.......+++..+...    .  
T Consensus       182 ~~pET~~~~~r~P~~~~~----------------~~~~f~~l~k~k~~~gY~L~~ga~~g~~Faf~~~~Pfv~----~--  239 (400)
T TIGR00710       182 LLPETLPKEKRIPLQIST----------------SVETFLLLLKDKEFLGYALIYGASFGGFFAFLSGAPFVY----I--  239 (400)
T ss_pred             HCCCCCCHHCCCCHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--
T ss_conf             551227401037403001----------------399986788768889999999998687899998417886----4--


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             643574510018999999999999999999999998308999999999
Q gi|254780993|r  220 GLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGF  267 (279)
Q Consensus       220 ~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f  267 (279)
                      ..++.+|-..|+.    +....+..++|+++..|.-+|..++.++|.-
T Consensus       240 ~~~gVsp~~fg~l----f~~~~~a~i~g~f~~gr~~~k~~~~~~lr~~  283 (400)
T TIGR00710       240 DIMGVSPSVFGLL----FALNIIAMIFGGFLNGRFIKKIGAKSLLRIA  283 (400)
T ss_pred             HCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             0014656778999----9999999999999998666543100147899


No 33 
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=81.18  E-value=3  Score=18.87  Aligned_cols=81  Identities=10%  Similarity=0.168  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99899999999677657887528855356665456764-69999977640366310223589999999999721578774
Q gi|254780993|r   71 MGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLP-ITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYC  149 (279)
Q Consensus        71 vgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~-~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~  149 (279)
                      .+|+.--.+.-.+.=++...|+...+.-.+-.++-..+ ..+...++...++|+||+.-.++..-+..+++..+....+.
T Consensus        13 ~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~d~d~   92 (205)
T COG4300          13 IATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLLFAFVLNFVPEEWILGLLGLIPIYLGIKVLILGDDDG   92 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99637799999999997324674798867878868999999999999996184989988875878998468750266767


Q ss_pred             CC
Q ss_conf             33
Q gi|254780993|r  150 ER  151 (279)
Q Consensus       150 ~~  151 (279)
                      ++
T Consensus        93 e~   94 (205)
T COG4300          93 EE   94 (205)
T ss_pred             CH
T ss_conf             43


No 34 
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein; InterPro: IPR011853    In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This entry describes such transporters, found in the archaea and in bacteria..
Probab=80.14  E-value=3.3  Score=18.68  Aligned_cols=41  Identities=34%  Similarity=0.267  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHH---HCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             15676676665---211266899999984898446346667888
Q gi|254780993|r  163 GMVTGFLSGAL---GVGGGIFTNLLMLFYGASIYKATATSAGVS  203 (279)
Q Consensus       163 g~~~G~~sgl~---GiGGG~l~vp~l~~~g~~~~~avgTS~~~~  203 (279)
                      ....|.+||--   -+-.|.++.|+|++.|++.+.|-|+..+-+
T Consensus       224 Sal~G~~sGSsvANvVttG~fTIPlMKr~Gy~~~fAgAvEAaAS  267 (681)
T TIGR02123       224 SALMGMISGSSVANVVTTGSFTIPLMKRAGYKPEFAGAVEAAAS  267 (681)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             67887789999988885200003567637779774166688786


No 35 
>PRK10323 neutral amino-acid efflux protein; Provisional
Probab=79.17  E-value=3.5  Score=18.50  Aligned_cols=61  Identities=13%  Similarity=0.023  Sum_probs=32.4

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHH---HHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             65788752885535666545676469---999977640366--310223589999999999721578
Q gi|254780993|r   85 SFMEHRRHGTINMKILKDWIFVLPIT---TVVTSLMISHVD--KSFLNKAFAIFCLLMGILMLKRDR  146 (279)
Q Consensus        85 ~~~~~~k~~~i~~~~~~~l~~~~~~G---a~lGa~l~~~i~--~~~l~~~f~v~ll~~a~~~~~~~~  146 (279)
                      +..+|-.|+.+..-.+...+...+..   ..+++. ....|  .+++|++=+.+++++|.++.+.+.
T Consensus        30 ~g~~~G~r~tlp~~~Gi~~G~~~~~~l~~~gl~~l-~~~~P~~~~~lk~~Ga~YLlyLA~ki~~s~~   95 (195)
T PRK10323         30 SATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSL-AVIDPAAVHLLSWAGAAYIVWLAWKIATSPT   95 (195)
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99856899999999889899999999999999999-9988899999999999999999999971987


No 36 
>TIGR00779 cad cadmium resistance transporter family protein; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export..
Probab=78.92  E-value=2.9  Score=18.97  Aligned_cols=81  Identities=10%  Similarity=0.131  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99989999999967765788752885535666545676-469999977640-3663102235899999999997215787
Q gi|254780993|r   70 AMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVL-PITTVVTSLMIS-HVDKSFLNKAFAIFCLLMGILMLKRDRL  147 (279)
Q Consensus        70 AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~~-~~Ga~lGa~l~~-~i~~~~l~~~f~v~ll~~a~~~~~~~~~  147 (279)
                      |.|..+..+..--.+..-+|.+.|  |.=.+-.++..- +.-+.++++... ++|++|.--++|+.-++++++.+.+.+.
T Consensus         3 atg~d~LVILl~~f~~~Kt~~~~k--dI~iGQYlG~~ili~vSLl~afgv~nliPekWvlGLLGLiPiYLGik~~Ikge~   80 (196)
T TIGR00779         3 ATGVDLLVILLILFARAKTRKEVK--DIYIGQYLGSIILILVSLLLAFGVVNLIPEKWVLGLLGLIPIYLGIKVFIKGEE   80 (196)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCC--EEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEEECCC
T ss_conf             058999999999974220268733--268833688999999999998888750641476777645347423176774587


Q ss_pred             CCCCC
Q ss_conf             74333
Q gi|254780993|r  148 YCERK  152 (279)
Q Consensus       148 ~~~~~  152 (279)
                      +.+++
T Consensus        81 ded~~   85 (196)
T TIGR00779        81 DEDER   85 (196)
T ss_pred             CCHHH
T ss_conf             61368


No 37 
>TIGR02840 spore_YtaF putative sporulation protein YtaF; InterPro: IPR014205   This entry represents YtaF, which represents a protein family identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome. The phylogenetic profile of the members matches the subset of the Firmicutes capable of forming endospores. These species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, and Geobacillus kaustophilus..
Probab=74.79  E-value=4.7  Score=17.81  Aligned_cols=183  Identities=14%  Similarity=0.138  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHH----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC-
Q ss_conf             999899999999677657887528-85535666545----676469999977640366310223589999999999721-
Q gi|254780993|r   70 AMGTSLGVIAPTSVMSFMEHRRHG-TINMKILKDWI----FVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK-  143 (279)
Q Consensus        70 AvgTsl~~~~~ts~~~~~~~~k~~-~i~~~~~~~l~----~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~-  143 (279)
                      |.+.|+=..     .....|=-|| +++..-....+    ....++=.+|.++..++|.+.=+.+=++.++..++|.+. 
T Consensus         7 A~A~SlD~f-----~vG~~YGlrkIkip~~S~liIa~~S~l~~~~sM~~G~~L~~~lP~~~~~~lG~~iL~~~G~~~~~~   81 (215)
T TIGR02840         7 AFAVSLDSF-----GVGIAYGLRKIKIPFLSLLIIAVISGLFIFISMLLGKLLAKFLPPKVTEILGAIILIAIGIWIIYN   81 (215)
T ss_pred             HHHHHHHHH-----HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999-----999997524653166999999999999999999999999974676788899999999999999999


Q ss_pred             --CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH----HCCCCHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf             --5787743333234013321156766766652112668999999----8489844634--6667888666778999998
Q gi|254780993|r  144 --RDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLML----FYGASIYKAT--ATSAGVSALIAFPALLVRI  215 (279)
Q Consensus       144 --~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~----~~g~~~~~av--gTS~~~~~~~a~~g~i~~~  215 (279)
                        |++.+.+++..++.....+-+-..-++...-    .+--|-..    -=..+.|+|+  |.+++.-.   +..-++-.
T Consensus        82 ~~r~k~~~~~~~~~~~~~~vWr~~~~~lg~~~~----IL~~P~~AD~D~SG~I~~kEAllLG~ALsLDa---fGaGiGAs  154 (215)
T TIGR02840        82 AFRPKKERKKRSSEKDLSKVWRFELKSLGIVIQ----ILRNPEVADLDKSGNITGKEALLLGIALSLDA---FGAGIGAS  154 (215)
T ss_pred             HHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHH----HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_conf             860578887630013576102446500135566----53377626777886200899999999999999---99989998


Q ss_pred             HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-----HH----HHHHHHHHHHHH
Q ss_conf             53876435745100189999999999999999999999983089999-----99----999999999998
Q gi|254780993|r  216 YSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKY-----LT----IGFSMIMFTTSF  276 (279)
Q Consensus       216 ~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~-----lk----~~f~i~l~~v~~  276 (279)
                      ..|.+.            +...+...+.+.+..+.|.++.+|..++.     .+    ..=+++++..|+
T Consensus       155 l~G~~p------------~~~~~~~~~~S~~fv~~G~~lG~~~~~~~~G~FT~~~~s~~l~G~~Li~lG~  212 (215)
T TIGR02840       155 LLGLNP------------LATSILVAVMSFIFVSLGLKLGKKVSKVSIGKFTIKKFSTFLPGILLILLGV  212 (215)
T ss_pred             HHCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             861178------------9999999999999999999886788740453135877886648999999999


No 38 
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=74.72  E-value=4.8  Score=17.80  Aligned_cols=12  Identities=42%  Similarity=0.451  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             446346667888
Q gi|254780993|r  192 IYKATATSAGVS  203 (279)
Q Consensus       192 ~~~avgTS~~~~  203 (279)
                      +|+++||+..+.
T Consensus       377 p~~~~Gt~~G~~  388 (452)
T PRK11273        377 PKKAAGTAAGFT  388 (452)
T ss_pred             CHHHHHHHHHHH
T ss_conf             773678999998


No 39 
>PRK10229 threonine efflux system; Provisional
Probab=74.65  E-value=4.8  Score=17.79  Aligned_cols=130  Identities=13%  Similarity=0.083  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             310223589999999999721578774---33332340133211567667666521126689999998489844634666
Q gi|254780993|r  123 KSFLNKAFAIFCLLMGILMLKRDRLYC---ERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATATS  199 (279)
Q Consensus       123 ~~~l~~~f~v~ll~~a~~~~~~~~~~~---~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgTS  199 (279)
                      -+.+|+.=+.++++++++++++...++   +++.........-.+.-|++..+.-.=.-.+..-++..+ .+......+.
T Consensus        71 f~~ik~~Ga~YL~yLG~~~lr~~~~~~~~~~~~~~~~~~~~~~~f~~G~l~nllNPK~~lFf~a~f~qf-i~~~~~~~~~  149 (206)
T PRK10229         71 HTIIMVGGGLYLCWMGYQMLRGALKKEDVAAEEPQVELAKSGRSFLKGLLTNLSNPKAIIYFGSVFSLF-VGDNVGAGAR  149 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-CCCCCCHHHH
T ss_conf             999999999999999999998642356765444343555266899999999800829999999998865-4898646899


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             78886667789999985387643574510018999999999999999999999998308999999999999999998729
Q gi|254780993|r  200 AGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSFVFA  279 (279)
Q Consensus       200 ~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~~ma  279 (279)
                      ..+..........                     |...+     +...+.-..|...+-.++++.+..+.+++..|++++
T Consensus       150 ~~~~~~~~~~~~~---------------------w~~~~-----~~~~s~~~~~~~~~r~~~~i~~~~G~~~i~~gi~L~  203 (206)
T PRK10229        150 WGIFALIIVETLA---------------------WFTVV-----ASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLI  203 (206)
T ss_pred             HHHHHHHHHHHHH---------------------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999---------------------99999-----999966999998798899999999999999999999


No 40 
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=74.24  E-value=4.9  Score=17.73  Aligned_cols=45  Identities=13%  Similarity=0.044  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             666545676469999977640366310223589999999999721
Q gi|254780993|r   99 ILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK  143 (279)
Q Consensus        99 ~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~  143 (279)
                      .......+-+++-.+|.++.++.+=+..-+.++++-++.....++
T Consensus       132 ~~~~~~~~p~~aP~lGg~l~~~~gW~~~F~~l~~~~~l~~l~~~~  176 (392)
T PRK10473        132 LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGIAVLLLSLF  176 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999988888889999998749499999999999999999999


No 41 
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=71.43  E-value=5.8  Score=17.36  Aligned_cols=91  Identities=15%  Similarity=0.052  Sum_probs=43.4

Q ss_pred             HHHHHHHCCHHHHHHHHHHH--CCCCH---HHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             67666521126689999998--48984---463466678886667789-9999853876435745100189999999999
Q gi|254780993|r  168 FLSGALGVGGGIFTNLLMLF--YGASI---YKATATSAGVSALIAFPA-LLVRIYSGWGLNGLPPWSLGFVNIGAVLIIL  241 (279)
Q Consensus       168 ~~sgl~GiGGG~l~vp~l~~--~g~~~---~~avgTS~~~~~~~a~~g-~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~  241 (279)
                      +.-.++|+.||.+.||+-.+  ..-|.   -+.+|.++.+....-+.+ .++.....      ..++..       -.+.
T Consensus       332 ~~l~~~G~~gGlfiVPL~A~iQ~~a~~~~r~rviAanNi~n~~~mv~~~~~~~~l~~------~~~s~~-------~~f~  398 (1150)
T PRK08633        332 LLFFLFGFSGGLFIVPLNALIQFRAPEKELGEVLAANNFLQNVGMLLFLGLTWLFSY------LGISPA-------GLFY  398 (1150)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHH-------HHHH
T ss_conf             999999998677567789998741886552342289899999999999999999998------188999-------9999


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             999999999999983089999999999999
Q gi|254780993|r  242 PISILITPLATKLSYMIGKKYLTIGFSMIM  271 (279)
Q Consensus       242 ~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l  271 (279)
                      ..++..........+++|+..+|-+.-.++
T Consensus       399 ~la~~~~~~~~~~~~~lP~~~~R~~~~~~~  428 (1150)
T PRK08633        399 FIALVTLIGTLYTLRKLPDSLLRFLLLVAM  428 (1150)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999857999999999999


No 42 
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit; InterPro: IPR011293   The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the A subunit.; GO: 0006118 electron transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=67.47  E-value=7  Score=16.89  Aligned_cols=115  Identities=14%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             52689823668999998999999996776578875288553566654567646999997764036631022358999999
Q gi|254780993|r   57 QLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLL  136 (279)
Q Consensus        57 ~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~  136 (279)
                      |.+|++.+.  ..|+|-+.++.++.+.++...+.=++                      ++...++=+.+|++--+..+.
T Consensus        27 PF~GVSKk~--~~A~GMg~AvtFVm~lAs~~~Wlv~~----------------------fIL~pl~L~fLrtI~FILVIA   82 (193)
T TIGR01943        27 PFLGVSKKL--ETAVGMGLAVTFVMTLASVISWLVDK----------------------FILDPLNLEFLRTIAFILVIA   82 (193)
T ss_pred             CCCCCCCHH--HHHCCCCHHHHHHHHHHHHHHHHHHH----------------------HCCCCCCCHHHHHHHHHHHHH
T ss_conf             533444304--33216618999999999999999986----------------------602313627899999999999


Q ss_pred             HHHHHH---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999972---157877433332340133211567667666521126689999998-4898446346667888666778999
Q gi|254780993|r  137 MGILML---KRDRLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLF-YGASIYKATATSAGVSALIAFPALL  212 (279)
Q Consensus       137 ~a~~~~---~~~~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~-~g~~~~~avgTS~~~~~~~a~~g~i  212 (279)
                      .-+++.   .||..+.-.        ...|...=.+++==    .++.+|+++. .+++.-++        .+-+++++.
T Consensus        83 ~lVQlvE~vvrK~SP~LY--------~~LGIFLPLITTNC----AVLG~aLlni~~~~~l~~S--------~~ya~gA~~  142 (193)
T TIGR01943        83 ALVQLVEMVVRKTSPVLY--------RALGIFLPLITTNC----AVLGVALLNIQLDYNLLQS--------VLYAVGAAL  142 (193)
T ss_pred             HHHHHHHHEEECCCHHHH--------HHHCCCCCHHHHHH----HHHHHHHHHHHHCCHHHHH--------HHHHHHHHH
T ss_conf             988575010017884668--------87134141356779----9988999998511119999--------999999999


Q ss_pred             HHH
Q ss_conf             998
Q gi|254780993|r  213 VRI  215 (279)
Q Consensus       213 ~~~  215 (279)
                      ||.
T Consensus       143 GFt  145 (193)
T TIGR01943       143 GFT  145 (193)
T ss_pred             HHH
T ss_conf             999


No 43 
>COG2035 Predicted membrane protein [Function unknown]
Probab=66.26  E-value=7.5  Score=16.75  Aligned_cols=75  Identities=12%  Similarity=0.080  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99999999999998402199999999999852689823668999998999999996776578875288553566654567
Q gi|254780993|r   27 IVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFV  106 (279)
Q Consensus        27 ~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~ts~~~~~~~~k~~~i~~~~~~~l~~~  106 (279)
                      .+-|.+-|.-.-.=|+.||.+..=.=.|        ..              ..+++.+- .+.++...||+...+++.+
T Consensus         8 ~~kG~~mG~AdivPGVSGGTiAlilGIY--------er--------------lI~~i~~~-~~~~~~~~~~~fLi~l~~G   64 (276)
T COG2035           8 VFKGILMGAADIVPGVSGGTIALILGIY--------ER--------------LIEAIAGI-FKLDEFKRNVLFLIPLGIG   64 (276)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHH--------HH--------------HHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999874207887322999999899--------99--------------99987500-1223466404889999999


Q ss_pred             HHHHHHHHHHHHCCCCCC
Q ss_conf             646999997764036631
Q gi|254780993|r  107 LPITTVVTSLMISHVDKS  124 (279)
Q Consensus       107 ~~~Ga~lGa~l~~~i~~~  124 (279)
                      ...+-..=+.+.+++=++
T Consensus        65 ~~~~i~~~a~ii~~ll~~   82 (276)
T COG2035          65 MLLGIFLFAKIIEYLLEN   82 (276)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999984


No 44 
>pfam09605 Trep_Strep Hypothetical bacterial integral membrane protein (Trep_Strep). This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. It is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=65.70  E-value=7.7  Score=16.69  Aligned_cols=28  Identities=14%  Similarity=0.211  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             9999999999999999983089999999
Q gi|254780993|r  238 LIILPISILITPLATKLSYMIGKKYLTI  265 (279)
Q Consensus       238 ~~i~~~s~~ga~iGa~l~~~l~~~~lk~  265 (279)
                      ....+.+++++.+|+.+++|+-+|+.||
T Consensus       159 ~~~~~~t~v~a~iG~~iG~kllkKHF~K  186 (186)
T pfam09605       159 IIMVAATVVCGLLGALIGKKLLKKHFEK  186 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999999999999999974689


No 45 
>PRK10263 DNA translocase FtsK; Provisional
Probab=58.79  E-value=10  Score=15.99  Aligned_cols=113  Identities=13%  Similarity=0.118  Sum_probs=56.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH------HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             553566654567646999997764036631022358999------99999997215787743333234013321156766
Q gi|254780993|r   95 INMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIF------CLLMGILMLKRDRLYCERKFPDNYVKYIWGMVTGF  168 (279)
Q Consensus        95 i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~------ll~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~  168 (279)
                      =.|...-|-.+--=.|..+|+|++.     .|...||++      +++.+.+..||+|........-.+.+.++|.+.=+
T Consensus        49 PSWSQTAWhepIhNlGG~~GAWlAD-----TLFf~FGvLAY~iP~im~~~cW~~fR~r~~~~~iDyf~~slRLiG~LaLi  123 (1355)
T PRK10263         49 PSWSQTAWHEPIHNLGGMPGAWLAD-----TLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALI  123 (1355)
T ss_pred             CCCCCCCCCCHHHCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             8843347786200157635189998-----99999899998899999999999998615676600899999999999999


Q ss_pred             HHHH---------------HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             7666---------------521126689999998489844634666788866677899999853876
Q gi|254780993|r  169 LSGA---------------LGVGGGIFTNLLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWG  220 (279)
Q Consensus       169 ~sgl---------------~GiGGG~l~vp~l~~~g~~~~~avgTS~~~~~~~a~~g~i~~~~~G~~  220 (279)
                      +++-               -|+-|..+....+     |.-+..|+.++..+..+..=+   +++|+.
T Consensus       124 LTSCGLAalN~DDi~YFaSGGVIGsllSsa~l-----P~lN~lGaTL~LL~~WaaGlT---LFTGwS  182 (1355)
T PRK10263        124 LTSCGLAAINADDIWYFASGGVIGSLLSTTLQ-----PLLHSSGGTIALLCVWAAGLT---LFTGWS  182 (1355)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---HHCCCH
T ss_conf             97004654174111102577870087777688-----766306389999999987546---530551


No 46 
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=58.38  E-value=11  Score=15.95  Aligned_cols=41  Identities=15%  Similarity=0.096  Sum_probs=25.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             001899999999999999999999999830899999999999
Q gi|254780993|r  228 SLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSM  269 (279)
Q Consensus       228 ~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i  269 (279)
                      +...+.|. .....++.++|..+|.|++.|-+.+.+...+..
T Consensus       245 s~~~vs~~-Ll~~Gv~~~~Gn~~gGrl~dr~~~~~l~~~~~l  285 (394)
T COG2814         245 SVSAVSLV-LLAFGIAGFIGNLLGGRLADRGPRRALIAALLL  285 (394)
T ss_pred             CHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             87688999-999989999987777640202106699999999


No 47 
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=58.07  E-value=11  Score=15.92  Aligned_cols=27  Identities=22%  Similarity=-0.029  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             999999999999999998308999999
Q gi|254780993|r  238 LIILPISILITPLATKLSYMIGKKYLT  264 (279)
Q Consensus       238 ~~i~~~s~~ga~iGa~l~~~l~~~~lk  264 (279)
                      ....+++++|..++.|+..|-+++.+.
T Consensus       259 ~~fGi~~~~Gn~l~G~l~dr~~~~~l~  285 (394)
T PRK10213        259 LSFGIASFVGTSLSSFILKRSVKLALA  285 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999996310878999


No 48 
>PRK10091 MFS transport protein AraJ; Provisional
Probab=56.40  E-value=11  Score=15.76  Aligned_cols=45  Identities=4%  Similarity=-0.001  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             666545676469999977640366310223589999999999721
Q gi|254780993|r   99 ILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK  143 (279)
Q Consensus        99 ~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~  143 (279)
                      ...-+..+.+.|..+|.++.++.+=+..-+..+++.++..+...+
T Consensus       132 v~~g~s~a~v~G~p~g~~l~~~~gWR~~F~~~~~l~~~~~~~~~~  176 (389)
T PRK10091        132 MVSGMTVANLFGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIWF  176 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999987448899999999999999999999


No 49 
>PRK10527 hypothetical protein; Provisional
Probab=56.10  E-value=12  Score=15.73  Aligned_cols=63  Identities=6%  Similarity=0.092  Sum_probs=34.2

Q ss_pred             HHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             887528-855356665456764699999776403663102235899999999997215787743333
Q gi|254780993|r   88 EHRRHG-TINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCERKF  153 (279)
Q Consensus        88 ~~~k~~-~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~~~  153 (279)
                      +.|+++ .+..|.=............+..++.   +..+.+....+.+....+++++++..++++++
T Consensus        61 ~~w~~~r~i~~~~K~~a~~~m~~~~~~s~~~~---~~~~v~~~l~~~~~~v~~~i~r~Pt~~~~~~~  124 (125)
T PRK10527         61 RFWQKHRAMPPGAKPRAILLILLTFAISLWLV---QMPWVRIMLLVILACLLIFMWRIPVIDEKQQK  124 (125)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC
T ss_conf             99998899278999999999999999999997---37999999999999999886026788610235


No 50 
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=53.80  E-value=13  Score=15.52  Aligned_cols=45  Identities=7%  Similarity=0.079  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             666545676469999977640366310223589999999999721
Q gi|254780993|r   99 ILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK  143 (279)
Q Consensus        99 ~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~  143 (279)
                      ...-...+..+|..+|+++.++.+=+..-+..+++.++..+..++
T Consensus       120 ~~~~~~~~~~~~p~iGg~l~~~~gWr~~F~~~~~~~~l~~~l~~~  164 (377)
T PRK11102        120 VTLVMTIAPLLAPIIGGYLLVWFSWHSIFWVLALAAILASALVFF  164 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999704888887799981356689999999999999999999


No 51 
>pfam02040 ArsB Arsenical pump membrane protein.
Probab=53.78  E-value=13  Score=15.52  Aligned_cols=44  Identities=9%  Similarity=0.415  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             79999999999999999999984021999999999998526898236
Q gi|254780993|r   19 VVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSI   65 (279)
Q Consensus        19 ~i~~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~   65 (279)
                      .--++.++++.++++.+++--   .--++++|+...+-..+++||..
T Consensus        90 ~~L~~~l~l~~a~~Safl~Nd---ttvLlltPvvi~i~~~l~~~P~~  133 (423)
T pfam02040        90 RRMFVFIVLLGAIVAALFAND---GAALILTPIVLAMVRALGFNKKA  133 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC---CCEEEHHHHHHHHHHHCCCCCCC
T ss_conf             479999999999999998144---02000167899999981999631


No 52 
>pfam02683 DsbD Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.
Probab=50.03  E-value=15  Score=15.18  Aligned_cols=21  Identities=5%  Similarity=0.341  Sum_probs=18.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999999872
Q gi|254780993|r  258 IGKKYLTIGFSMIMFTTSFVF  278 (279)
Q Consensus       258 l~~~~lk~~f~i~l~~v~~~m  278 (279)
                      -..+++|++++++++.+++.+
T Consensus       184 ~~~~~v~~v~G~~li~~gi~~  204 (206)
T pfam02683       184 KNSRWIRIASGVLLILIGILL  204 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999


No 53 
>cd03684 ClC_3_like ClC-3-like chloride channel proteins.  This CD  includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart.   ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=49.82  E-value=15  Score=15.16  Aligned_cols=27  Identities=4%  Similarity=0.000  Sum_probs=14.0

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             528855356665456764699999776
Q gi|254780993|r   91 RHGTINMKILKDWIFVLPITTVVTSLM  117 (279)
Q Consensus        91 k~~~i~~~~~~~l~~~~~~Ga~lGa~l  117 (279)
                      |+++-|.|.....+.++-+++..++=+
T Consensus       121 ~~~~~~~r~llaaGaAAGiaAaF~APi  147 (445)
T cd03684         121 RRNEAKRREILSAAAAAGVAVAFGAPI  147 (445)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             688888889998366665888837865


No 54 
>pfam11833 DUF3353 Protein of unknown function (DUF3353). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=49.42  E-value=15  Score=15.13  Aligned_cols=20  Identities=20%  Similarity=0.340  Sum_probs=11.0

Q ss_pred             HHHHHHHHHCCCCCHHHHHH
Q ss_conf             77657887528855356665
Q gi|254780993|r   83 VMSFMEHRRHGTINMKILKD  102 (279)
Q Consensus        83 ~~~~~~~~k~~~i~~~~~~~  102 (279)
                      +....+.+|+|+++.+....
T Consensus        38 LM~rLr~Rq~Gki~v~~~ir   57 (193)
T pfam11833        38 LMQRLRQRQEGKIKVPEAIR   57 (193)
T ss_pred             HHHHHHHHHCCCCCHHHHHH
T ss_conf             99999876356776377775


No 55 
>COG3619 Predicted membrane protein [Function unknown]
Probab=48.00  E-value=16  Score=15.00  Aligned_cols=17  Identities=6%  Similarity=0.163  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHCCCC
Q ss_conf             76469999977640366
Q gi|254780993|r  106 VLPITTVVTSLMISHVD  122 (279)
Q Consensus       106 ~~~~Ga~lGa~l~~~i~  122 (279)
                      .-++|...+.....+..
T Consensus        67 ~Fv~Gv~~~~~~~r~~~   83 (226)
T COG3619          67 AFVLGVAAAELISRRAT   83 (226)
T ss_pred             HHHHHHHHHHHHHHHHC
T ss_conf             99999999999999843


No 56 
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13).  The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.
Probab=44.82  E-value=18  Score=14.73  Aligned_cols=44  Identities=25%  Similarity=0.264  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             79999999999999999999984021999999999998526898236
Q gi|254780993|r   19 VVDYICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSI   65 (279)
Q Consensus        19 ~i~~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~   65 (279)
                      -.-.+..+...++++.+++..   .-..++.|+..-+....|.+|+.
T Consensus        84 ~~l~~~~~~~~~~lS~~isn~---a~~~i~~Pi~~~i~~~~~~~~~~  127 (382)
T cd01115          84 RRLLLLLMLVTAFLSAFMSNT---ATVAIMLPVALGLAAKLDISPSR  127 (382)
T ss_pred             HHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             999999999999998731430---78885289999999986999314


No 57 
>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ; InterPro: IPR012651   Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptococcus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation..
Probab=44.54  E-value=18  Score=14.70  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHCHH--H--HHHHHHHH
Q ss_conf             99999999999840219--9--99999999
Q gi|254780993|r   29 ASFLSGTLSGLFGVGGG--L--VMVPVLSK   54 (279)
Q Consensus        29 ~g~~~G~~~gl~G~GGG--~--i~vP~l~~   54 (279)
                      .|+.+|++-|+.-+=.|  .  +.-|...+
T Consensus        52 ~G~~~GLi~GlL~~i~G~ay~~~l~~~Q~~   81 (187)
T TIGR02357        52 AGLVAGLIWGLLKIILGKAYKNILHPVQVL   81 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             998998999999999656512400088999


No 58 
>PRK10958 leucine export protein LeuE; Provisional
Probab=42.19  E-value=20  Score=14.50  Aligned_cols=132  Identities=11%  Similarity=-0.030  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             31022358999999999972157----87743333234013321156766766652112668999999848984463466
Q gi|254780993|r  123 KSFLNKAFAIFCLLMGILMLKRD----RLYCERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATAT  198 (279)
Q Consensus       123 ~~~l~~~f~v~ll~~a~~~~~~~----~~~~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avgT  198 (279)
                      -..+|+.=+.+++++++++++..    +.++.+..........-.+.-|++..+.-.=...+..-++-.+ +|+..... 
T Consensus        73 f~vlk~~Ga~YLi~LGik~lrs~~~~~~~~~~~~~~~~~~~~~~~f~~G~l~~l~NPKa~lFf~a~fpqF-i~~~~~~~-  150 (213)
T PRK10958         73 FNVVKYLGAAYLLYLGVKMLRAALRGWRARKAEAAASPAVDGGAPFRKALILSLTNPKAILFFVSFFVQF-VDPNYAHP-  150 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCCCCH-
T ss_conf             9999999999999999999998874014455444556776556799999999724933999989976632-68888728-


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHH
Q ss_conf             6788866677899999853876435745100189999999999999999999999983089-999999999999999987
Q gi|254780993|r  199 SAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIG-KKYLTIGFSMIMFTTSFV  277 (279)
Q Consensus       199 S~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~-~~~lk~~f~i~l~~v~~~  277 (279)
                      .............+.+                       .....-.+.++++..++.++-. .+.+++..+.+++..|++
T Consensus       151 ~~~~~~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~vfig~g~~  207 (213)
T PRK10958        151 ALSFLILATILQLVSF-----------------------CYLSFLIFSGAFLAQYFRRRKKLAAGGNSLVGLLFVGFAAK  207 (213)
T ss_pred             HHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999-----------------------99999999999999999758799999999999999999999


Q ss_pred             HC
Q ss_conf             29
Q gi|254780993|r  278 FA  279 (279)
Q Consensus       278 ma  279 (279)
                      +|
T Consensus       208 LA  209 (213)
T PRK10958        208 LA  209 (213)
T ss_pred             HH
T ss_conf             98


No 59 
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=40.73  E-value=21  Score=14.37  Aligned_cols=38  Identities=11%  Similarity=0.246  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             67646999997764036631022358999999999972
Q gi|254780993|r  105 FVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILML  142 (279)
Q Consensus       105 ~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~  142 (279)
                      ..+++.+..|..+...+-+-++...++++.+++++.|+
T Consensus       230 ~lG~~~~~~G~~~q~~lQ~P~vl~~~~~lfv~laLSmf  267 (577)
T PRK00293        230 LLGLVVAAAGLQFQAALQHPYVLIGLAILFVLLALSMF  267 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999877899987342999999999999999986


No 60 
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=35.48  E-value=25  Score=13.90  Aligned_cols=30  Identities=3%  Similarity=0.173  Sum_probs=12.3

Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             887528855356665456764699999776
Q gi|254780993|r   88 EHRRHGTINMKILKDWIFVLPITTVVTSLM  117 (279)
Q Consensus        88 ~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l  117 (279)
                      +..|++.+|.+....+...+++++.+|+.+
T Consensus        39 r~~k~~g~~~~~~~~~~~~~vi~giiGaRl   68 (269)
T PRK12437         39 RNGKKKNVPFDVILDLVLYAFPFAILGARI   68 (269)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999986989899999999999999999999


No 61 
>TIGR00788 fbt folate/biopterin transporter; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters , . This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).; GO: 0016020 membrane.
Probab=35.02  E-value=26  Score=13.86  Aligned_cols=110  Identities=15%  Similarity=0.082  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHCCHHHHHHH-----HHHHCCCCHH-HHHHHHHHHHHH-----HHHHHHHH--HHHCCCCCCCCCCCCH
Q ss_conf             156766766652112668999-----9998489844-634666788866-----67789999--9853876435745100
Q gi|254780993|r  163 GMVTGFLSGALGVGGGIFTNL-----LMLFYGASIY-KATATSAGVSAL-----IAFPALLV--RIYSGWGLNGLPPWSL  229 (279)
Q Consensus       163 g~~~G~~sgl~GiGGG~l~vp-----~l~~~g~~~~-~avgTS~~~~~~-----~a~~g~i~--~~~~G~~~~~~~~~~~  229 (279)
                      |++.=...-+.+..+-...+-     .+-..++=.. ..|.......+.     ..+++...  |.++-+..+..|++..
T Consensus       321 gvl~~~~~~~~~~~~~i~~~~~~~~~~~C~~~F~~~P~~I~~p~~F~f~s~~~~~~~P~~~~~~F~~~t~~L~~~P~f~g  400 (594)
T TIGR00788       321 GVLALVKVQILGLKGAIQYTSIVVAVVVCVSSFVTLPLEIAKPLLFIFLSRIAYAVLPGASSAVFVATTNCLPGGPEFLG  400 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEE
T ss_conf             69999999998689999999999999888644530566785678999999999997033015443553661278842787


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             1899999999999999999999999830899999999999999999
Q gi|254780993|r  230 GFVNIGAVLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTS  275 (279)
Q Consensus       230 G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~  275 (279)
                      - +..  ...=.++++.|..+=.+..|++|++-+|++|.+.-++..
T Consensus       401 ~-~~~--~~~~~l~~l~Gv~~~~~F~~~~P~~S~R~~~~~~~~l~~  443 (594)
T TIGR00788       401 R-VKL--VTNGILGSLLGVVVYDRFLKTLPKRSYRLIFGVTTLLYT  443 (594)
T ss_pred             E-EHH--HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             6-416--788899999889987446652560458899999999999


No 62 
>TIGR00902 2A0127 MFS transporter, phenyl propionate permease (PPP) family; InterPro: IPR005276    This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. .
Probab=33.33  E-value=28  Score=13.70  Aligned_cols=63  Identities=6%  Similarity=0.127  Sum_probs=48.0

Q ss_pred             HHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             8752885535666545-67646999997764036631022358999999999972157877433
Q gi|254780993|r   89 HRRHGTINMKILKDWI-FVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCER  151 (279)
Q Consensus        89 ~~k~~~i~~~~~~~l~-~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~~  151 (279)
                      ..||=.+|.--++.++ ..=++|+.+-..+..+++++.+..++...+-...+-.+.|+..+|++
T Consensus       122 WQ~Q~~LDYGKVRL~GS~AF~~G~~~~G~l~~~~~~~~I~~~LT~~~~~~~~~~L~~PTI~P~~  185 (388)
T TIGR00902       122 WQKQIGLDYGKVRLIGSVAFVLGVVLFGKLVTMVDERVILALLTLLLAFYLLIFLLKPTIQPKD  185 (388)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             5553387643344667799998888862135333147999999999999999998468999987


No 63 
>TIGR01710 typeII_sec_gspG general secretion pathway protein G; InterPro: IPR010054   This entry represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=31.81  E-value=29  Score=13.56  Aligned_cols=20  Identities=5%  Similarity=0.413  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             17999999999999999999
Q gi|254780993|r   18 CVVDYICLIIVASFLSGTLS   37 (279)
Q Consensus        18 ~~i~~i~~l~~~g~~~G~~~   37 (279)
                      ..+|.+.+++++|++++++.
T Consensus         4 TLlE~~VVlvIlGLLaalv~   23 (137)
T TIGR01710         4 TLLEIMVVLVILGLLAALVV   23 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             26788999999999999986


No 64 
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=30.65  E-value=31  Score=13.45  Aligned_cols=40  Identities=5%  Similarity=0.099  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999998308999999999999999998
Q gi|254780993|r  237 VLIILPISILITPLATKLSYMIGKKYLTIGFSMIMFTTSF  276 (279)
Q Consensus       237 ~~~i~~~s~~ga~iGa~l~~~l~~~~lk~~f~i~l~~v~~  276 (279)
                      ......-.+.|+.+|.|+.+..-....|..+..++..++.
T Consensus       237 wl~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l  276 (352)
T COG3180         237 WLLAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIAL  276 (352)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf             9999999999999744421788998673101599999999


No 65 
>TIGR01592 holin_SPP1 holin, SPP1 family; InterPro: IPR006479   This group of sequences represent one of more than 30 families of phage proteins, all lacking detectable homology with each other, known or believed to act as holins. Holins act in cell lysis by bacteriophage. Members of this family are found in phage PBSX and phage SPP1, among others. .
Probab=30.16  E-value=31  Score=13.41  Aligned_cols=39  Identities=15%  Similarity=0.089  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             89823668999998-9999999967765788752885535
Q gi|254780993|r   60 GIDDSICMHVAMGT-SLGVIAPTSVMSFMEHRRHGTINMK   98 (279)
Q Consensus        60 g~~~~~~~~~AvgT-sl~~~~~ts~~~~~~~~k~~~i~~~   98 (279)
                      -+|.+..-|+.-+. |..++.|+...+.+.+||++++--+
T Consensus        30 PvdE~~i~~~~~~~Y~~~s~~Ft~~vsl~a~~KnN~~T~k   69 (82)
T TIGR01592        30 PVDEESISTLVDAVYSIFSVVFTIGVSLWAWYKNNYITRK   69 (82)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             3072039999999999999999998987665025411087


No 66 
>TIGR00784 citMHS citrate transporter; InterPro: IPR014738   This entry consists of known and predicted citrate transporters. It includes two characterised citrate/proton symporters, CitM and CitH, from Bacillus subtilis . Both of these proteins couple the uptake of citrate in complex with a divalent cation to the uptake of protons, but differ in their metal ion specificities. CitM transports citrate in complex with Mg(2+), Ni(2+), Mn(2+), Co(2+), and Zn2(+), while CitH transports citrate in complex with Ca(2+), Ba(2+), and Sr(2+). A third paralog, YraO, exists in B. subtilis, but the function of this protein is not known. .
Probab=27.90  E-value=34  Score=13.18  Aligned_cols=32  Identities=19%  Similarity=0.369  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999985268982366899999899999999
Q gi|254780993|r   47 VMVPVLSKAFQLMGIDDSICMHVAMGTSLGVIAPT   81 (279)
Q Consensus        47 i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~~~~~t   81 (279)
                      ++=|..--++..-.-|   +.+.|+||...++.++
T Consensus        79 LFDPli~KILS~VKGD---P~KIavGtAVLtMlia  110 (439)
T TIGR00784        79 LFDPLIEKILSIVKGD---PLKIAVGTAVLTMLIA  110 (439)
T ss_pred             CCHHHHHHHHHHCCCC---CCEEEHHHHHHHHHHH
T ss_conf             7304789886231589---6214233289999986


No 67 
>TIGR02865 spore_II_E stage II sporulation protein E; InterPro: IPR014221   This entry contains the stage II sporulation protein E (SpoIIE), which is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation and it has phosphatase activity, located in the C-terminal region, which is required to activate sigma-F. All members of this entry are found in endospore-forming Gram-positive bacteria. A homologous protein, not a member of this entry, is found in the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis..
Probab=27.08  E-value=36  Score=13.10  Aligned_cols=15  Identities=0%  Similarity=-0.033  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             999677657887528
Q gi|254780993|r   79 APTSVMSFMEHRRHG   93 (279)
Q Consensus        79 ~~ts~~~~~~~~k~~   93 (279)
                      ++.-+.-..+..+++
T Consensus        70 ~iiL~~~~lk~~~~~   84 (794)
T TIGR02865        70 VIILLSYVLKNLKDK   84 (794)
T ss_pred             HHHHHHHHHHCCCCC
T ss_conf             999999998134312


No 68 
>TIGR00935 2a45 arsenical pump membrane protein; InterPro: IPR000802   Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria . The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane . The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase.   The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane.
Probab=26.80  E-value=36  Score=13.07  Aligned_cols=94  Identities=13%  Similarity=0.309  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCC
Q ss_conf             9999999999999999998402199999999999852689823668999998999-------999996776578875288
Q gi|254780993|r   22 YICLIIVASFLSGTLSGLFGVGGGLVMVPVLSKAFQLMGIDDSICMHVAMGTSLG-------VIAPTSVMSFMEHRRHGT   94 (279)
Q Consensus        22 ~i~~l~~~g~~~G~~~gl~G~GGG~i~vP~l~~~f~~~g~~~~~~~~~AvgTsl~-------~~~~ts~~~~~~~~k~~~   94 (279)
                      +..++++...++.+++--   |--++++|+-.-+..-++++|.....--++.+..       -+.++=..-+-.++||-.
T Consensus        96 f~~~~LlgA~vsAffaNd---ga~LilTPivi~l~~~L~f~~~~~L~~~~~~gfIad~as~~l~vsNlv~ivs~d~~K~g  172 (507)
T TIGR00935        96 FVFLVLLGAVVSAFFAND---GAALILTPIVIALLEVLGFNPRTILAFVVAAGFIADAASLPLIVSNLVNIVSADYRKFG  172 (507)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCCEEEEEECHHHHCC
T ss_conf             999999999999987556---79899619999999973889441325431433011230467877554666401023226


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             553566654567646999997764
Q gi|254780993|r   95 INMKILKDWIFVLPITTVVTSLMI  118 (279)
Q Consensus        95 i~~~~~~~l~~~~~~Ga~lGa~l~  118 (279)
                      +|+.....-.+.+.+-+.+-++..
T Consensus       173 lgF~~y~~~M~p~~~~~~~~~~~~  196 (507)
T TIGR00935       173 LGFAEYTSHMLPGNILVLVATLLV  196 (507)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             847777677467999999999999


No 69 
>PRK11043 inner membrane transport protein YdhC; Provisional
Probab=25.98  E-value=37  Score=12.99  Aligned_cols=42  Identities=10%  Similarity=0.090  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             545676469999977640366310223589999999999721
Q gi|254780993|r  102 DWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK  143 (279)
Q Consensus       102 ~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~  143 (279)
                      ..++.-+++-.+|+++..+.+=+..-....++-++..+..++
T Consensus       138 ~~~i~p~laP~iGg~l~~~~gWr~iF~~l~~~gvll~l~~~~  179 (401)
T PRK11043        138 LVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLW  179 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999889999970478699999999999999999986


No 70 
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=25.94  E-value=38  Score=12.98  Aligned_cols=45  Identities=7%  Similarity=0.045  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             45676469999977640366310-------2235899999999997215787
Q gi|254780993|r  103 WIFVLPITTVVTSLMISHVDKSF-------LNKAFAIFCLLMGILMLKRDRL  147 (279)
Q Consensus       103 l~~~~~~Ga~lGa~l~~~i~~~~-------l~~~f~v~ll~~a~~~~~~~~~  147 (279)
                      ...+.+.++.....+.+.++++.       +-..++......++++-++-++
T Consensus       169 ~~~G~lla~~v~~~l~~~l~~~~~~~wGWRipFlig~i~~li~l~lR~~l~E  220 (432)
T PRK10406        169 LIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDE  220 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999997406822222510999999999999999999972777


No 71 
>PRK02833 phosphate-starvation-inducible protein PsiE; Provisional
Probab=25.28  E-value=39  Score=12.92  Aligned_cols=62  Identities=15%  Similarity=0.130  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99677657887528-855356665456764699999776403663102235899999999997215
Q gi|254780993|r   80 PTSVMSFMEHRRHG-TINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKR  144 (279)
Q Consensus        80 ~ts~~~~~~~~k~~-~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~  144 (279)
                      +-=..=..+|.|++ +.+.|.....++.+++--.+-   .+.-|-+.+-..-+++++..+.+....
T Consensus        65 FEFialIikYfk~~~HfplryfiyIGITAiiRliIv---~H~~~~~tLl~a~aILlLvi~L~i~~~  127 (133)
T PRK02833         65 FEFIALIVKYFKSGGHFPLRYFIYIGITAIIRLIIV---DHESPMDTLLYAGAILLLVIGLFILNS  127 (133)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999998689733799999999999999998---658898899999999999999999755


No 72 
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=23.79  E-value=41  Score=12.75  Aligned_cols=15  Identities=13%  Similarity=0.131  Sum_probs=6.2

Q ss_pred             HHHHHHH-HCCCCHHH
Q ss_conf             8999999-84898446
Q gi|254780993|r  180 FTNLLML-FYGASIYK  194 (279)
Q Consensus       180 l~vp~l~-~~g~~~~~  194 (279)
                      +..|++. -.|++..+
T Consensus       231 m~~pFll~dlG~s~~~  246 (402)
T PRK11902        231 LSTTFLIRGAGFSAGE  246 (402)
T ss_pred             HHHHHHHHHCCCCHHH
T ss_conf             8789999752999999


No 73 
>pfam01790 LGT Prolipoprotein diacylglyceryl transferase.
Probab=23.41  E-value=42  Score=12.71  Aligned_cols=43  Identities=9%  Similarity=0.037  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9996776578875288553566654567646999997764036
Q gi|254780993|r   79 APTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV  121 (279)
Q Consensus        79 ~~ts~~~~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i  121 (279)
                      +..+..-+.+..|++.+|.+....+...+++++.+|+.+...+
T Consensus        25 ~l~~~~~~~~~~~r~g~~~~~~~~l~~~~~i~giiGARl~~vl   67 (257)
T pfam01790        25 ILLAYWLARKRAKKRGINKDQLDDLLLWAVLGGIIGARLGYVL   67 (257)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf             9999999999998769898999999999999999864057778


No 74 
>PRK11663 regulatory protein UhpC; Provisional
Probab=23.07  E-value=43  Score=12.68  Aligned_cols=39  Identities=10%  Similarity=0.130  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             676469999977640366310223589999999999721
Q gi|254780993|r  105 FVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLK  143 (279)
Q Consensus       105 ~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~  143 (279)
                      +++..+..+.+++..+..=+..-.+.++..++.++..++
T Consensus       158 vG~~l~~~l~~~i~~~~gWr~~F~~~g~~~~v~~~~~~~  196 (434)
T PRK11663        158 VGGALIPLVVGAIALHYGWRYGMIIAGIIAIVVGLFLCW  196 (434)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             778888999999999806299999999999999999998


No 75 
>pfam07690 MFS_1 Major Facilitator Superfamily.
Probab=23.02  E-value=43  Score=12.67  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             6545676469999977640366310223589999999999
Q gi|254780993|r  101 KDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGIL  140 (279)
Q Consensus       101 ~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~  140 (279)
                      .....+..+|..+++.+.+..+-++.-...++......+.
T Consensus       128 ~~~~ig~~ig~~i~~~l~~~~~~~~~f~~~~~~~~i~~i~  167 (345)
T pfam07690       128 AGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVL  167 (345)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8602454312489999997014889999999999999999


No 76 
>TIGR00881 2A0104 phosphoglycerate transporter family protein; InterPro: IPR000849   Proteins in this group are involved in the transport system that mediates the uptake of a number of sugar phosphates as well as the regulatory components that are responsible for induction of this transport system by external glucose 6-phosphate. In Escherichia coli its role in transmembrane signalling may involve sugar-phosphate-binding sites and transmembrane orientations similar to those of the transport protein . The following proteins in this entry, involved in the uptake of phosphorylated metabolites, are evolutionary related , :  E. coli, Bacillus subtilis and Haemophilus influenzae glycerol-3- phosphate transporter (gene glpT). Salmonella typhimurium phosphoglycerate transporter (gene pgtP). E. coli and S. typhimurium hexose-6-phosphate transporter (gene uhpT). E. coli and S. typhimurium protein uhpC. UhpC is necessary for the expression of uhpT and seems to act jointly with the uhpB sensor/kinase protein. Human glucose 6-phosphate translocase .    These proteins of about 50 kDa apparently contain 12 transmembrane regions.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=22.93  E-value=43  Score=12.66  Aligned_cols=39  Identities=8%  Similarity=-0.034  Sum_probs=22.5

Q ss_pred             HHHHHHH-HHHHHHHCCCCCCHH--HHHHHHHHHHHHHHHHC
Q ss_conf             6764699-999776403663102--23589999999999721
Q gi|254780993|r  105 FVLPITT-VVTSLMISHVDKSFL--NKAFAIFCLLMGILMLK  143 (279)
Q Consensus       105 ~~~~~Ga-~lGa~l~~~i~~~~l--~~~f~v~ll~~a~~~~~  143 (279)
                      +++.+.+ ++........+.++.  -..=+...++.++-.+.
T Consensus       134 vGG~~~pp~~~~~~~~~~~w~~~~~~~~~g~~aii~s~~~~~  175 (404)
T TIGR00881       134 VGGGLLPPLVLFGIALLYSWHVVSSFIVPGIIAIIVSLICLL  175 (404)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             757899999999999881655688999999999999889544


No 77 
>TIGR02838 spore_V_AC stage V sporulation protein AC; InterPro: IPR014203   This entry describes stage V sporulation protein AC; a paralog of stage V sporulation protein AE. Both are proteins found to be present in a species, if and only if, that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sporulation defect..
Probab=22.78  E-value=43  Score=12.64  Aligned_cols=57  Identities=18%  Similarity=0.197  Sum_probs=34.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHH
Q ss_conf             4333323401332115676676665211266899999984898446346-66788866677
Q gi|254780993|r  149 CERKFPDNYVKYIWGMVTGFLSGALGVGGGIFTNLLMLFYGASIYKATA-TSAGVSALIAF  208 (279)
Q Consensus       149 ~~~~~~~~~~~~~~g~~~G~~sgl~GiGGG~l~vp~l~~~g~~~~~avg-TS~~~~~~~a~  208 (279)
                      ..|.+|+..+.-+..+++|.+=-.+|-   .+...++.++.++.+++-. |+..+++..++
T Consensus         9 ~~~PKP~~lKNc~~AF~~GGLIC~iGq---~~~~fy~~~f~~se~~a~~~t~~tlIfl~al   66 (141)
T TIGR02838         9 KYEPKPPYLKNCVMAFLVGGLICLIGQ---LISDFYLRYFQFSEKTAGSPTVATLIFLSAL   66 (141)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf             720797634667677767759998999---9999998553534765037289999999999


No 78 
>PRK09952 shikimate transporter; Provisional
Probab=22.66  E-value=44  Score=12.63  Aligned_cols=44  Identities=16%  Similarity=0.163  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHHHHHHCCCC
Q ss_conf             45676469999977640366310-------223589999999999721578
Q gi|254780993|r  103 WIFVLPITTVVTSLMISHVDKSF-------LNKAFAIFCLLMGILMLKRDR  146 (279)
Q Consensus       103 l~~~~~~Ga~lGa~l~~~i~~~~-------l~~~f~v~ll~~a~~~~~~~~  146 (279)
                      ...+.+.++.+...+...++++.       +-..++....+.++++-++-+
T Consensus       170 ~~~G~llas~~~~~l~~~l~~~~~~~wGWRipFlig~l~~li~l~iR~~l~  220 (438)
T PRK09952        170 YGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGME  220 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             899999999999999983688888531429999999999999999998278


No 79 
>pfam03741 TerC Integral membrane protein TerC family. This family contains a number of integral membrane proteins that also contains the TerC protein. TerC has been implicated in resistance to tellurium. This protein may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of the group of clinical isolates for antibiotics and heavy metal ion resistance. Determinant of the tellurite resistance of the strain was located on a large conjugative plasmid. Analyses showed, the genes terB, terC, terD and terE are essential for conservation of the resistance. The members of the family contain a number of conserved aspartates that could be involved in binding to metal ions.
Probab=21.75  E-value=46  Score=12.53  Aligned_cols=60  Identities=13%  Similarity=0.164  Sum_probs=35.1

Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             887528855356665456764699999776403663102235899999999997215787743
Q gi|254780993|r   88 EHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSFLNKAFAIFCLLMGILMLKRDRLYCE  150 (279)
Q Consensus        88 ~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i~~~~l~~~f~v~ll~~a~~~~~~~~~~~~  150 (279)
                      .++|++...|-....+. .=+.-...++++.+..  ++++.++++++++.+++++++++..++
T Consensus        27 ~~~r~~al~~Gi~~A~v-~R~i~i~~~~~ll~~~--~~l~~igg~~Li~~~~k~~~~~~~~~~   86 (184)
T pfam03741        27 PEQQKKALFWGIIGALV-LRIILILLGSALLELF--DWILLIGGAFLLYTAIKLLRENEEDDE   86 (184)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999999999-9999999999999970--799999999999999999873234432


No 80 
>pfam06699 PIG-F GPI biosynthesis protein family Pig-F. PIG-F is involved in glycosylphosphatidylinositol (GPI) anchor biosynthesis.
Probab=20.35  E-value=49  Score=12.36  Aligned_cols=26  Identities=12%  Similarity=0.284  Sum_probs=12.6

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99984898446346667888666778
Q gi|254780993|r  184 LMLFYGASIYKATATSAGVSALIAFP  209 (279)
Q Consensus       184 ~l~~~g~~~~~avgTS~~~~~~~a~~  209 (279)
                      .+..+|.|..+-..-.-.+..-.+.-
T Consensus        81 ~lILfGAPl~~~~~~T~l~a~hls~L  106 (190)
T pfam06699        81 LLVLFGAPLLEHLLETFLLALHLSVL  106 (190)
T ss_pred             HHHHHCCCHHHCHHHHHHHHHHHHHH
T ss_conf             99996853664309999999999999


Done!