Query gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 279
No_of_seqs 133 out of 2082
Neff 7.7
Searched_HMMs 23785
Date Wed Jun 1 01:00:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780993.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3few_X Colicin S4; cell lysis, 43.6 6.4 0.00027 15.9 1.1 25 240-264 472-496 (505)
2 1ldf_A Glycerol uptake facilit 39.0 13 0.00056 14.2 18.4 34 86-119 72-105 (281)
3 3cn5_A Aquaporin; membrane pro 27.9 21 0.00088 13.2 12.8 35 87-121 129-163 (304)
4 1col_A Colicin A; antibacteria 27.1 22 0.00091 13.1 3.3 58 196-265 145-202 (204)
5 2gfp_A EMRD, multidrug resista 25.1 24 0.00099 12.9 14.1 26 102-127 132-157 (375)
6 2o9g_A Aquaporin Z; integral m 16.8 36 0.0015 11.9 6.4 35 86-120 70-104 (234)
7 3gd8_A Aquaporin-4; proton exc 13.8 44 0.0018 11.5 7.9 34 87-120 71-104 (223)
8 3iyz_A Aquaporin-4; water tran 8.2 70 0.0029 10.4 11.3 36 86-121 118-153 (340)
9 3org_A CMCLC; transporter, tra 7.9 72 0.003 10.3 9.2 24 91-114 149-172 (632)
10 2hi2_A Fimbrial protein; type 7.1 79 0.0033 10.1 3.1 19 18-36 2-20 (158)
No 1
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=43.62 E-value=6.4 Score=15.93 Aligned_cols=25 Identities=20% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 9999999999999998308999999
Q gi|254780993|r 240 ILPISILITPLATKLSYMIGKKYLT 264 (279)
Q Consensus 240 i~~~s~~ga~iGa~l~~~l~~~~lk 264 (279)
+.+.+.+++++..++..+++...+|
T Consensus 472 ~~~~~~~~~~i~~~~~~~~n~~~~~ 496 (505)
T 3few_X 472 ILLAAVVGALLDDKFADALNKEIIK 496 (505)
T ss_dssp HHHHHHHHHHHCTHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHCC
T ss_conf 9999999998378999998998624
No 2
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport protein; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=39.03 E-value=13 Score=14.22 Aligned_cols=34 Identities=3% Similarity=0.027 Sum_probs=27.5
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5788752885535666545676469999977640
Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMIS 119 (279)
Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~ 119 (279)
+...+-.|+++|+........=++|+.+|+.+..
T Consensus 72 Tla~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~ 105 (281)
T 1ldf_A 72 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVY 105 (281)
T ss_dssp HHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999980787466602669999999999999999
No 3
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=27.93 E-value=21 Score=13.19 Aligned_cols=35 Identities=0% Similarity=-0.044 Sum_probs=28.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78875288553566654567646999997764036
Q gi|254780993|r 87 MEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV 121 (279)
Q Consensus 87 ~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i 121 (279)
...+-.|+++|+......+.-+.|+.+|+.+...+
T Consensus 129 la~~l~g~i~~~~~~~YiiaQ~lGA~~ga~l~~~~ 163 (304)
T 3cn5_A 129 FGLFLARKVELLRALVYMIAQCLGAICGVGLVKAF 163 (304)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986475608788999999999999999999854
No 4
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=27.14 E-value=22 Score=13.11 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 4666788866677899999853876435745100189999999999999999999999983089999999
Q gi|254780993|r 196 TATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTI 265 (279)
Q Consensus 196 vgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~ 265 (279)
++|+.+..++.+..++..... |. |. -......+.+.+..++++..++..++++..+|.
T Consensus 145 ~A~~va~~~~s~~~~~~a~~~-~~-----~~------~~~giagili~a~v~a~Idd~~v~~iN~~li~~ 202 (204)
T 1col_A 145 IASSVALGIFSATLGAYALSL-GV-----PA------IAVGIAGILLAAVVGALIDDKFADALNNEIIRP 202 (204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC-CS-----CH------HHHHHHHHHHHHHHHHHHCTHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HC-----CH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 899999999999999999986-03-----26------799999999999999994689999989975568
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=25.08 E-value=24 Score=12.89 Aligned_cols=26 Identities=4% Similarity=-0.033 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 54567646999997764036631022
Q gi|254780993|r 102 DWIFVLPITTVVTSLMISHVDKSFLN 127 (279)
Q Consensus 102 ~l~~~~~~Ga~lGa~l~~~i~~~~l~ 127 (279)
....+..+|..+|.++.++.+.+..-
T Consensus 132 ~~~~g~~ig~~~~~~l~~~~~~~~~~ 157 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACY 157 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 12355544650022100000023578
No 6
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, PSI-2, protein structure initiative, center for structures of membrane proteins; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
Probab=16.82 E-value=36 Score=11.91 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=28.2
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 57887528855356665456764699999776403
Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH 120 (279)
Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~ 120 (279)
+...+-.|+++|+........=+.|+.+|+.+...
T Consensus 70 Tla~~~~g~~~~~~~~~Yi~aQ~lGa~~g~~~~~~ 104 (234)
T 2o9g_A 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYL 104 (234)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999848997999999999999899999999999
No 7
>3gd8_A Aquaporin-4; proton exclusion, structural genomics, PSI-2, protein structure initiative, center for structures of membrane proteins, CSMP; HET: BOG; 1.80A {Homo sapiens}
Probab=13.80 E-value=44 Score=11.46 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=28.3
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7887528855356665456764699999776403
Q gi|254780993|r 87 MEHRRHGTINMKILKDWIFVLPITTVVTSLMISH 120 (279)
Q Consensus 87 ~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~ 120 (279)
...+..|+++|+........-+.|+.+|+.+...
T Consensus 71 la~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~ 104 (223)
T 3gd8_A 71 VAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYL 104 (223)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8998669974336389999999999999999986
No 8
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=8.22 E-value=70 Score=10.37 Aligned_cols=36 Identities=8% Similarity=-0.001 Sum_probs=29.4
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 578875288553566654567646999997764036
Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV 121 (279)
Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i 121 (279)
+...+-.|+++|+......+.=+.|+++|+.+...+
T Consensus 118 Tla~~l~g~i~~~~~i~YiiaQ~lGAi~ga~lv~~i 153 (340)
T 3iyz_A 118 TVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 153 (340)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999997599877885999999999999999999873
No 9
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=7.87 E-value=72 Score=10.28 Aligned_cols=24 Identities=0% Similarity=-0.244 Sum_probs=10.4
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 528855356665456764699999
Q gi|254780993|r 91 RHGTINMKILKDWIFVLPITTVVT 114 (279)
Q Consensus 91 k~~~i~~~~~~~l~~~~~~Ga~lG 114 (279)
++.+-+.|.....+.++-+++..+
T Consensus 149 ~~~~~~~r~l~~~g~aagiaa~F~ 172 (632)
T 3org_A 149 CTDRALRLQTLAAACAVGLASSFG 172 (632)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 688888899998888999998715
No 10
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=7.15 E-value=79 Score=10.09 Aligned_cols=19 Identities=11% Similarity=0.396 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 1799999999999999999
Q gi|254780993|r 18 CVVDYICLIIVASFLSGTL 36 (279)
Q Consensus 18 ~~i~~i~~l~~~g~~~G~~ 36 (279)
-+||.++.+.++|+++++.
T Consensus 2 TLIELlVVIaIIgILaaia 20 (158)
T 2hi2_A 2 TLIELMIVIAIVGILAAVA 20 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 4428999999999999999
Done!