Query gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 279 No_of_seqs 133 out of 2082 Neff 7.7 Searched_HMMs 23785 Date Wed Jun 1 01:00:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780993.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3few_X Colicin S4; cell lysis, 43.6 6.4 0.00027 15.9 1.1 25 240-264 472-496 (505) 2 1ldf_A Glycerol uptake facilit 39.0 13 0.00056 14.2 18.4 34 86-119 72-105 (281) 3 3cn5_A Aquaporin; membrane pro 27.9 21 0.00088 13.2 12.8 35 87-121 129-163 (304) 4 1col_A Colicin A; antibacteria 27.1 22 0.00091 13.1 3.3 58 196-265 145-202 (204) 5 2gfp_A EMRD, multidrug resista 25.1 24 0.00099 12.9 14.1 26 102-127 132-157 (375) 6 2o9g_A Aquaporin Z; integral m 16.8 36 0.0015 11.9 6.4 35 86-120 70-104 (234) 7 3gd8_A Aquaporin-4; proton exc 13.8 44 0.0018 11.5 7.9 34 87-120 71-104 (223) 8 3iyz_A Aquaporin-4; water tran 8.2 70 0.0029 10.4 11.3 36 86-121 118-153 (340) 9 3org_A CMCLC; transporter, tra 7.9 72 0.003 10.3 9.2 24 91-114 149-172 (632) 10 2hi2_A Fimbrial protein; type 7.1 79 0.0033 10.1 3.1 19 18-36 2-20 (158) No 1 >3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli} Probab=43.62 E-value=6.4 Score=15.93 Aligned_cols=25 Identities=20% Similarity=0.281 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHH Q ss_conf 9999999999999998308999999 Q gi|254780993|r 240 ILPISILITPLATKLSYMIGKKYLT 264 (279) Q Consensus 240 i~~~s~~ga~iGa~l~~~l~~~~lk 264 (279) +.+.+.+++++..++..+++...+| T Consensus 472 ~~~~~~~~~~i~~~~~~~~n~~~~~ 496 (505) T 3few_X 472 ILLAAVVGALLDDKFADALNKEIIK 496 (505) T ss_dssp HHHHHHHHHHHCTHHHHHHHHHTSC T ss_pred HHHHHHHHHHHCHHHHHHHHHHHCC T ss_conf 9999999998378999998998624 No 2 >1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport protein; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Probab=39.03 E-value=13 Score=14.22 Aligned_cols=34 Identities=3% Similarity=0.027 Sum_probs=27.5 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788752885535666545676469999977640 Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMIS 119 (279) Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~ 119 (279) +...+-.|+++|+........=++|+.+|+.+.. T Consensus 72 Tla~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~ 105 (281) T 1ldf_A 72 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVY 105 (281) T ss_dssp HHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999980787466602669999999999999999 No 3 >3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Probab=27.93 E-value=21 Score=13.19 Aligned_cols=35 Identities=0% Similarity=-0.044 Sum_probs=28.7 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 78875288553566654567646999997764036 Q gi|254780993|r 87 MEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV 121 (279) Q Consensus 87 ~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i 121 (279) ...+-.|+++|+......+.-+.|+.+|+.+...+ T Consensus 129 la~~l~g~i~~~~~~~YiiaQ~lGA~~ga~l~~~~ 163 (304) T 3cn5_A 129 FGLFLARKVELLRALVYMIAQCLGAICGVGLVKAF 163 (304) T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99986475608788999999999999999999854 No 4 >1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1 Probab=27.14 E-value=22 Score=13.11 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 4666788866677899999853876435745100189999999999999999999999983089999999 Q gi|254780993|r 196 TATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGFVNIGAVLIILPISILITPLATKLSYMIGKKYLTI 265 (279) Q Consensus 196 vgTS~~~~~~~a~~g~i~~~~~G~~~~~~~~~~~G~v~~~~~~~i~~~s~~ga~iGa~l~~~l~~~~lk~ 265 (279) ++|+.+..++.+..++..... |. |. -......+.+.+..++++..++..++++..+|. T Consensus 145 ~A~~va~~~~s~~~~~~a~~~-~~-----~~------~~~giagili~a~v~a~Idd~~v~~iN~~li~~ 202 (204) T 1col_A 145 IASSVALGIFSATLGAYALSL-GV-----PA------IAVGIAGILLAAVVGALIDDKFADALNNEIIRP 202 (204) T ss_dssp CCHHHHHHHHHHHHHHHHHHC-CS-----CH------HHHHHHHHHHHHHHHHHHCTHHHHHHHHHTTC- T ss_pred HHHHHHHHHHHHHHHHHHHHH-HC-----CH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 899999999999999999986-03-----26------799999999999999994689999989975568 No 5 >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Probab=25.08 E-value=24 Score=12.89 Aligned_cols=26 Identities=4% Similarity=-0.033 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHH Q ss_conf 54567646999997764036631022 Q gi|254780993|r 102 DWIFVLPITTVVTSLMISHVDKSFLN 127 (279) Q Consensus 102 ~l~~~~~~Ga~lGa~l~~~i~~~~l~ 127 (279) ....+..+|..+|.++.++.+.+..- T Consensus 132 ~~~~g~~ig~~~~~~l~~~~~~~~~~ 157 (375) T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACY 157 (375) T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 12355544650022100000023578 No 6 >2o9g_A Aquaporin Z; integral membrane protein, structural genomics, PSI-2, protein structure initiative, center for structures of membrane proteins; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* Probab=16.82 E-value=36 Score=11.91 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=28.2 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 57887528855356665456764699999776403 Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH 120 (279) Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~ 120 (279) +...+-.|+++|+........=+.|+.+|+.+... T Consensus 70 Tla~~~~g~~~~~~~~~Yi~aQ~lGa~~g~~~~~~ 104 (234) T 2o9g_A 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYL 104 (234) T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999848997999999999999899999999999 No 7 >3gd8_A Aquaporin-4; proton exclusion, structural genomics, PSI-2, protein structure initiative, center for structures of membrane proteins, CSMP; HET: BOG; 1.80A {Homo sapiens} Probab=13.80 E-value=44 Score=11.46 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=28.3 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 7887528855356665456764699999776403 Q gi|254780993|r 87 MEHRRHGTINMKILKDWIFVLPITTVVTSLMISH 120 (279) Q Consensus 87 ~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~ 120 (279) ...+..|+++|+........-+.|+.+|+.+... T Consensus 71 la~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~ 104 (223) T 3gd8_A 71 VAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYL 104 (223) T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8998669974336389999999999999999986 No 8 >3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Probab=8.22 E-value=70 Score=10.37 Aligned_cols=36 Identities=8% Similarity=-0.001 Sum_probs=29.4 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 578875288553566654567646999997764036 Q gi|254780993|r 86 FMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHV 121 (279) Q Consensus 86 ~~~~~k~~~i~~~~~~~l~~~~~~Ga~lGa~l~~~i 121 (279) +...+-.|+++|+......+.=+.|+++|+.+...+ T Consensus 118 Tla~~l~g~i~~~~~i~YiiaQ~lGAi~ga~lv~~i 153 (340) T 3iyz_A 118 TVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 153 (340) T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999997599877885999999999999999999873 No 9 >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Probab=7.87 E-value=72 Score=10.28 Aligned_cols=24 Identities=0% Similarity=-0.244 Sum_probs=10.4 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 528855356665456764699999 Q gi|254780993|r 91 RHGTINMKILKDWIFVLPITTVVT 114 (279) Q Consensus 91 k~~~i~~~~~~~l~~~~~~Ga~lG 114 (279) ++.+-+.|.....+.++-+++..+ T Consensus 149 ~~~~~~~r~l~~~g~aagiaa~F~ 172 (632) T 3org_A 149 CTDRALRLQTLAAACAVGLASSFG 172 (632) T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 688888899998888999998715 No 10 >2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A* Probab=7.15 E-value=79 Score=10.09 Aligned_cols=19 Identities=11% Similarity=0.396 Sum_probs=13.9 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 1799999999999999999 Q gi|254780993|r 18 CVVDYICLIIVASFLSGTL 36 (279) Q Consensus 18 ~~i~~i~~l~~~g~~~G~~ 36 (279) -+||.++.+.++|+++++. T Consensus 2 TLIELlVVIaIIgILaaia 20 (158) T 2hi2_A 2 TLIELMIVIAIVGILAAVA 20 (158) T ss_dssp CHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 4428999999999999999 Done!