RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780993|ref|YP_003065406.1| hypothetical protein
CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62]
         (279 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 50/260 (19%), Positives = 77/260 (29%), Gaps = 104/260 (40%)

Query: 61  IDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH 120
           + D I        +L  +  T+ +   +    G   + IL+ W+   P  T         
Sbjct: 184 VGDLI---KFSAETLSELIRTT-LDAEKVFTQG---LNILE-WLE-NPSNTP-------- 226

Query: 121 VDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYV--KYIWGMVTG----FLSGALG 174
            DK +L     I C L+G++ L     Y         V  K + G   G    +L GA G
Sbjct: 227 -DKDYLLSI-PISCPLIGVIQLAH---YV--------VTAK-LLGFTPGELRSYLKGATG 272

Query: 175 VGGGIFTNLLMLFYGASIYKATATS------AGVSALIAFPALLVRIYSGW-GLNGLPPW 227
              G+ T         +I  A   S      +   A+     +L  I  G       P  
Sbjct: 273 HSQGLVT-------AVAI--AETDSWESFFVSVRKAI----TVLFFI--GVRCYEAYPNT 317

Query: 228 SLGFVNIGAVLIILPISILI--------TPLATKLSYM--------------IGK--KYL 263
           S            LP SIL          P     S M              + K   +L
Sbjct: 318 S------------LPPSILEDSLENNEGVP-----SPMLSISNLTQEQVQDYVNKTNSHL 360

Query: 264 ----TIGFSMIMFTTSFVFA 279
                +  S++    + V +
Sbjct: 361 PAGKQVEISLVNGAKNLVVS 380


>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage
           sensor, voltage dependent, ION channel, shaker, membrane
           protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
           2a79_B*
          Length = 514

 Score = 29.8 bits (66), Expect = 0.62
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 66  CMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSF 125
              +     +GVI  +S + F E     +    I   + +   + ++ T      V  + 
Sbjct: 343 LGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWW--AVVSMTTVGYGDMVPTTI 400

Query: 126 LNKAFAIFCLLMGILML 142
             K     C + G+L +
Sbjct: 401 GGKIVGSLCAIAGVLTI 417


>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium
           bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*
          Length = 899

 Score = 27.1 bits (59), Expect = 4.6
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 183 LLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGF-VNIGAVLIIL 241
           L  L Y    Y    +S   S L +    +  + +G   +G  PW   F +N+   +   
Sbjct: 371 LETLVYKYGRYLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYW 430

Query: 242 P 242
           P
Sbjct: 431 P 431


>2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer,
           tetramer of dimers, molecule ring, cellulose
           biosynthesis; 2.50A {Acetobacter xylinus} PDB: 2z9f_A
          Length = 167

 Score = 26.0 bits (57), Expect = 9.2
 Identities = 6/23 (26%), Positives = 9/23 (39%)

Query: 197 ATSAGVSALIAFPALLVRIYSGW 219
             SAG  +      +L  +Y  W
Sbjct: 104 VGSAGEPSGTWLAPVLEGLYGRW 126


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.331    0.145    0.444 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,370,058
Number of extensions: 105044
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 31
Length of query: 279
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 188
Effective length of database: 3,487,026
Effective search space: 655560888
Effective search space used: 655560888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.9 bits)