RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780993|ref|YP_003065406.1| hypothetical protein CLIBASIA_04470 [Candidatus Liberibacter asiaticus str. psy62] (279 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 37.2 bits (86), Expect = 0.004 Identities = 50/260 (19%), Positives = 77/260 (29%), Gaps = 104/260 (40%) Query: 61 IDDSICMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISH 120 + D I +L + T+ + + G + IL+ W+ P T Sbjct: 184 VGDLI---KFSAETLSELIRTT-LDAEKVFTQG---LNILE-WLE-NPSNTP-------- 226 Query: 121 VDKSFLNKAFAIFCLLMGILMLKRDRLYCERKFPDNYV--KYIWGMVTG----FLSGALG 174 DK +L I C L+G++ L Y V K + G G +L GA G Sbjct: 227 -DKDYLLSI-PISCPLIGVIQLAH---YV--------VTAK-LLGFTPGELRSYLKGATG 272 Query: 175 VGGGIFTNLLMLFYGASIYKATATS------AGVSALIAFPALLVRIYSGW-GLNGLPPW 227 G+ T +I A S + A+ +L I G P Sbjct: 273 HSQGLVT-------AVAI--AETDSWESFFVSVRKAI----TVLFFI--GVRCYEAYPNT 317 Query: 228 SLGFVNIGAVLIILPISILI--------TPLATKLSYM--------------IGK--KYL 263 S LP SIL P S M + K +L Sbjct: 318 S------------LPPSILEDSLENNEGVP-----SPMLSISNLTQEQVQDYVNKTNSHL 360 Query: 264 ----TIGFSMIMFTTSFVFA 279 + S++ + V + Sbjct: 361 PAGKQVEISLVNGAKNLVVS 380 >2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage sensor, voltage dependent, ION channel, shaker, membrane protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 2a79_B* Length = 514 Score = 29.8 bits (66), Expect = 0.62 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 2/77 (2%) Query: 66 CMHVAMGTSLGVIAPTSVMSFMEHRRHGTINMKILKDWIFVLPITTVVTSLMISHVDKSF 125 + +GVI +S + F E + I + + + ++ T V + Sbjct: 343 LGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWW--AVVSMTTVGYGDMVPTTI 400 Query: 126 LNKAFAIFCLLMGILML 142 K C + G+L + Sbjct: 401 GGKIVGSLCAIAGVLTI 417 >2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A* Length = 899 Score = 27.1 bits (59), Expect = 4.6 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 183 LLMLFYGASIYKATATSAGVSALIAFPALLVRIYSGWGLNGLPPWSLGF-VNIGAVLIIL 241 L L Y Y +S S L + + + +G +G PW F +N+ + Sbjct: 371 LETLVYKYGRYLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYW 430 Query: 242 P 242 P Sbjct: 431 P 431 >2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 2z9f_A Length = 167 Score = 26.0 bits (57), Expect = 9.2 Identities = 6/23 (26%), Positives = 9/23 (39%) Query: 197 ATSAGVSALIAFPALLVRIYSGW 219 SAG + +L +Y W Sbjct: 104 VGSAGEPSGTWLAPVLEGLYGRW 126 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.331 0.145 0.444 Gapped Lambda K H 0.267 0.0496 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,370,058 Number of extensions: 105044 Number of successful extensions: 375 Number of sequences better than 10.0: 1 Number of HSP's gapped: 375 Number of HSP's successfully gapped: 31 Length of query: 279 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 188 Effective length of database: 3,487,026 Effective search space: 655560888 Effective search space used: 655560888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 56 (25.9 bits)