Query         gi|254780994|ref|YP_003065407.1| hypothetical protein CLIBASIA_04475 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 53
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:00:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780994.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1pula1 a.39.1.11 (A:18-120) H  10.9      26  0.0019   15.8   0.1   13   11-23     22-34  (103)
  2 d2vgba1 b.58.1.1 (A:160-261) P   7.0      69   0.005   13.6   0.9   40    2-41     20-63  (102)
  3 d1wlma1 a.39.1.11 (A:8-145) Pr   6.3      49  0.0035   14.4  -0.2   13   11-23     27-39  (138)
  4 d2g3ra1 b.34.9.1 (A:1485-1537)   6.3      98  0.0071   12.8   1.8   27   22-48     26-52  (53)
  5 d1fl2a2 c.3.1.5 (A:326-451) Al   5.0 1.1E+02  0.0077   12.6   0.9   26    3-28     54-86  (126)
  6 d1vdca2 c.3.1.5 (A:118-243) Th   4.2 1.3E+02  0.0091   12.2   0.8   14    3-16     58-71  (130)
  7 d1d7ya2 c.3.1.5 (A:116-236) NA   3.8      80  0.0058   13.3  -0.5   41    2-42     53-93  (121)
  8 d1o1xa_ c.121.1.1 (A:) Putativ   3.7      70  0.0051   13.6  -0.8    6   43-48     63-68  (145)
  9 d1a3xa1 b.58.1.1 (A:88-188) Py   3.7 1.4E+02    0.01   12.0   0.7   39    3-41     19-61  (101)
 10 d1xjva1 b.40.4.3 (A:6-145) Pro   3.7 1.5E+02   0.011   11.8   1.5    8    3-10     71-78  (140)

No 1  
>d1pula1 a.39.1.11 (A:18-120) Hypothetical protein c32e8.3 {Caenorhabditis elegans [TaxId: 6239]}
Probab=10.88  E-value=26  Score=15.83  Aligned_cols=13  Identities=46%  Similarity=0.631  Sum_probs=10.1

Q ss_pred             CCCCCCCHHHHEE
Q ss_conf             0103410000001
Q gi|254780994|r   11 RDEMDSKNFSKAI   23 (53)
Q Consensus        11 rdemdsknfskai   23 (53)
                      ..||+++||+|-.
T Consensus        22 ~~em~~~~f~Kl~   34 (103)
T d1pula1          22 ATEMTGKNFDKWL   34 (103)
T ss_dssp             SSCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
T ss_conf             7677777899999


No 2  
>d2vgba1 b.58.1.1 (A:160-261) Pyruvate kinase (PK) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.00  E-value=69  Score=13.62  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=23.5

Q ss_pred             CCCEEEEEECCCCCCCHHHHEEEEEEEEEECC----CCEEEEEC
Q ss_conf             86299998401034100000013345554135----82699736
Q gi|254780994|r    2 NGDIFLVHRRDEMDSKNFSKAIEVRYTRLLED----NPILIGMG   41 (53)
Q Consensus         2 ngdiflvhrrdemdsknfskaievrytrlled----npiligmg   41 (53)
                      .||.+......+...+.-++.|.+.|-.+.++    ..||+.-|
T Consensus        20 ~G~~v~l~~~~~~~~~~~~~~i~v~~~~l~~~v~~G~~IliDDG   63 (102)
T d2vgba1          20 KGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPVGGRIYIDDG   63 (102)
T ss_dssp             TTCEEEEECCGGGGSCBCSSEEEBSCTTHHHHSCTTCEEEETTT
T ss_pred             CCCEEEEEECCCCCCCCCCCEEEECHHHHHHHCCCCCEEEECCC
T ss_conf             99999999688335789779998560897531377778998588


No 3  
>d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.33  E-value=49  Score=14.43  Aligned_cols=13  Identities=38%  Similarity=0.590  Sum_probs=9.8

Q ss_pred             CCCCCCCHHHHEE
Q ss_conf             0103410000001
Q gi|254780994|r   11 RDEMDSKNFSKAI   23 (53)
Q Consensus        11 rdemdsknfskai   23 (53)
                      ..+||+++|.|..
T Consensus        27 ~~~m~~~~f~K~~   39 (138)
T d1wlma1          27 GQEMNGKNWAKLC   39 (138)
T ss_dssp             SSEEEHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
T ss_conf             5547788999999


No 4  
>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.33  E-value=98  Score=12.81  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=21.4

Q ss_pred             EEEEEEEEEECCCCEEEEECCHHHHHH
Q ss_conf             013345554135826997365153232
Q gi|254780994|r   22 AIEVRYTRLLEDNPILIGMGEGILFCG   48 (53)
Q Consensus        22 aievrytrllednpiligmgegilfcg   48 (53)
                      +-|-||.-+..|+-----.|..||.|.
T Consensus        26 ~g~~r~rl~fdd~~ecev~gkdillcd   52 (53)
T d2g3ra1          26 VGAGKYKLLFDDGYECDVLGKDILLCD   52 (53)
T ss_dssp             EETTEEEEEETTSCEEEEEGGGEECCS
T ss_pred             CCCCEEEEEECCCCEEEECCCEEEEEC
T ss_conf             178659998059957775277278548


No 5  
>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}
Probab=4.95  E-value=1.1e+02  Score=12.62  Aligned_cols=26  Identities=15%  Similarity=0.268  Sum_probs=16.4

Q ss_pred             CCEEEEEECCCCCCCHH-------HHEEEEEEE
Q ss_conf             62999984010341000-------000133455
Q gi|254780994|r    3 GDIFLVHRRDEMDSKNF-------SKAIEVRYT   28 (53)
Q Consensus         3 gdiflvhrrdemdsknf-------skaievryt   28 (53)
                      .++.++|||+++.....       ++.|++.+.
T Consensus        54 ~~V~li~r~~~~~~~~~~~~~~~~~~~I~v~~~   86 (126)
T d1fl2a2          54 EHVTLLEFAPEMKADQVLQDKLRSLKNVDIILN   86 (126)
T ss_dssp             SEEEEECSSSSCCSCHHHHHHHHTCTTEEEESS
T ss_pred             CCEEEEECCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf             741798505510111000111124543268727


No 6  
>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.17  E-value=1.3e+02  Score=12.24  Aligned_cols=14  Identities=29%  Similarity=0.892  Sum_probs=10.9

Q ss_pred             CCEEEEEECCCCCC
Q ss_conf             62999984010341
Q gi|254780994|r    3 GDIFLVHRRDEMDS   16 (53)
Q Consensus         3 gdiflvhrrdemds   16 (53)
                      ..+.++||||++..
T Consensus        58 ~~V~li~r~~~~ra   71 (130)
T d1vdca2          58 SKVYIIHRRDAFRA   71 (130)
T ss_dssp             SEEEEECSSSSCCS
T ss_pred             CCEEEEEECCCCCC
T ss_conf             71799984565562


No 7  
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=3.81  E-value=80  Score=13.28  Aligned_cols=41  Identities=10%  Similarity=0.077  Sum_probs=22.3

Q ss_pred             CCCEEEEEECCCCCCCHHHHEEEEEEEEEECCCCEEEEECC
Q ss_conf             86299998401034100000013345554135826997365
Q gi|254780994|r    2 NGDIFLVHRRDEMDSKNFSKAIEVRYTRLLEDNPILIGMGE   42 (53)
Q Consensus         2 ngdiflvhrrdemdsknfskaievrytrllednpiligmge   42 (53)
                      +-++.++++.+..=++.|++.+--...+.++++.|-+-++.
T Consensus        53 g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~   93 (121)
T d1d7ya2          53 GVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFER   93 (121)
T ss_dssp             TCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESC
T ss_pred             CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf             61699996066211445888999999999997794999698


No 8  
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}
Probab=3.70  E-value=70  Score=13.57  Aligned_cols=6  Identities=83%  Similarity=1.924  Sum_probs=0.0

Q ss_pred             HHHHHH
Q ss_conf             153232
Q gi|254780994|r   43 GILFCG   48 (53)
Q Consensus        43 gilfcg   48 (53)
                      ||+|||
T Consensus        63 GIliCG   68 (145)
T d1o1xa_          63 GILLCG   68 (145)
T ss_dssp             EEEEES
T ss_pred             EEEECC
T ss_conf             998058


No 9  
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.69  E-value=1.4e+02  Score=11.98  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=0.0

Q ss_pred             CCEEEEEECCCCCCCHHHHEEEEEEEEEECC----CCEEEEEC
Q ss_conf             6299998401034100000013345554135----82699736
Q gi|254780994|r    3 GDIFLVHRRDEMDSKNFSKAIEVRYTRLLED----NPILIGMG   41 (53)
Q Consensus         3 gdiflvhrrdemdsknfskaievrytrlled----npiligmg   41 (53)
                      |+.+.+...++.....-++.|.+.|..+.++    ..||+.-|
T Consensus        19 G~~v~l~~~~~~~~~~~~~~i~v~y~~l~~~v~~G~~IliDDG   61 (101)
T d1a3xa1          19 NHEMIFTTDDKYAKACDDKIMYVDYKNITKVISAGRIIYVDDG   61 (101)
T ss_dssp             SCEEEEECCSSSSSSBCTTCEEBSCTTHHHHCCTTCEEEETTT
T ss_pred             CCEEEEEECCCCCCCCCCCEEECCCHHHHHHCCCCCEEEECCC
T ss_conf             9999998252025888756996360772543359999998288


No 10 
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.67  E-value=1.5e+02  Score=11.77  Aligned_cols=8  Identities=63%  Similarity=0.999  Sum_probs=0.0

Q ss_pred             CCEEEEEE
Q ss_conf             62999984
Q gi|254780994|r    3 GDIFLVHR   10 (53)
Q Consensus         3 gdiflvhr   10 (53)
                      |||.++||
T Consensus        71 GDII~l~r   78 (140)
T d1xjva1          71 GDIVRFHR   78 (140)
T ss_dssp             TCEEEEEE
T ss_pred             CCEEEEEE
T ss_conf             98999977


Done!