Query gi|254780994|ref|YP_003065407.1| hypothetical protein CLIBASIA_04475 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 53 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:00:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780994.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1pula1 a.39.1.11 (A:18-120) H 10.9 26 0.0019 15.8 0.1 13 11-23 22-34 (103) 2 d2vgba1 b.58.1.1 (A:160-261) P 7.0 69 0.005 13.6 0.9 40 2-41 20-63 (102) 3 d1wlma1 a.39.1.11 (A:8-145) Pr 6.3 49 0.0035 14.4 -0.2 13 11-23 27-39 (138) 4 d2g3ra1 b.34.9.1 (A:1485-1537) 6.3 98 0.0071 12.8 1.8 27 22-48 26-52 (53) 5 d1fl2a2 c.3.1.5 (A:326-451) Al 5.0 1.1E+02 0.0077 12.6 0.9 26 3-28 54-86 (126) 6 d1vdca2 c.3.1.5 (A:118-243) Th 4.2 1.3E+02 0.0091 12.2 0.8 14 3-16 58-71 (130) 7 d1d7ya2 c.3.1.5 (A:116-236) NA 3.8 80 0.0058 13.3 -0.5 41 2-42 53-93 (121) 8 d1o1xa_ c.121.1.1 (A:) Putativ 3.7 70 0.0051 13.6 -0.8 6 43-48 63-68 (145) 9 d1a3xa1 b.58.1.1 (A:88-188) Py 3.7 1.4E+02 0.01 12.0 0.7 39 3-41 19-61 (101) 10 d1xjva1 b.40.4.3 (A:6-145) Pro 3.7 1.5E+02 0.011 11.8 1.5 8 3-10 71-78 (140) No 1 >d1pula1 a.39.1.11 (A:18-120) Hypothetical protein c32e8.3 {Caenorhabditis elegans [TaxId: 6239]} Probab=10.88 E-value=26 Score=15.83 Aligned_cols=13 Identities=46% Similarity=0.631 Sum_probs=10.1 Q ss_pred CCCCCCCHHHHEE Q ss_conf 0103410000001 Q gi|254780994|r 11 RDEMDSKNFSKAI 23 (53) Q Consensus 11 rdemdsknfskai 23 (53) ..||+++||+|-. T Consensus 22 ~~em~~~~f~Kl~ 34 (103) T d1pula1 22 ATEMTGKNFDKWL 34 (103) T ss_dssp SSCCCHHHHHHHH T ss_pred CCCCCHHHHHHHH T ss_conf 7677777899999 No 2 >d2vgba1 b.58.1.1 (A:160-261) Pyruvate kinase (PK) {Human (Homo sapiens) [TaxId: 9606]} Probab=7.00 E-value=69 Score=13.62 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=23.5 Q ss_pred CCCEEEEEECCCCCCCHHHHEEEEEEEEEECC----CCEEEEEC Q ss_conf 86299998401034100000013345554135----82699736 Q gi|254780994|r 2 NGDIFLVHRRDEMDSKNFSKAIEVRYTRLLED----NPILIGMG 41 (53) Q Consensus 2 ngdiflvhrrdemdsknfskaievrytrlled----npiligmg 41 (53) .||.+......+...+.-++.|.+.|-.+.++ ..||+.-| T Consensus 20 ~G~~v~l~~~~~~~~~~~~~~i~v~~~~l~~~v~~G~~IliDDG 63 (102) T d2vgba1 20 KGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPVGGRIYIDDG 63 (102) T ss_dssp TTCEEEEECCGGGGSCBCSSEEEBSCTTHHHHSCTTCEEEETTT T ss_pred CCCEEEEEECCCCCCCCCCCEEEECHHHHHHHCCCCCEEEECCC T ss_conf 99999999688335789779998560897531377778998588 No 3 >d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus) [TaxId: 10090]} Probab=6.33 E-value=49 Score=14.43 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=9.8 Q ss_pred CCCCCCCHHHHEE Q ss_conf 0103410000001 Q gi|254780994|r 11 RDEMDSKNFSKAI 23 (53) Q Consensus 11 rdemdsknfskai 23 (53) ..+||+++|.|.. T Consensus 27 ~~~m~~~~f~K~~ 39 (138) T d1wlma1 27 GQEMNGKNWAKLC 39 (138) T ss_dssp SSEEEHHHHHHHH T ss_pred CCCCCHHHHHHHH T ss_conf 5547788999999 No 4 >d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Probab=6.33 E-value=98 Score=12.81 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=21.4 Q ss_pred EEEEEEEEEECCCCEEEEECCHHHHHH Q ss_conf 013345554135826997365153232 Q gi|254780994|r 22 AIEVRYTRLLEDNPILIGMGEGILFCG 48 (53) Q Consensus 22 aievrytrllednpiligmgegilfcg 48 (53) +-|-||.-+..|+-----.|..||.|. T Consensus 26 ~g~~r~rl~fdd~~ecev~gkdillcd 52 (53) T d2g3ra1 26 VGAGKYKLLFDDGYECDVLGKDILLCD 52 (53) T ss_dssp EETTEEEEEETTSCEEEEEGGGEECCS T ss_pred CCCCEEEEEECCCCEEEECCCEEEEEC T ss_conf 178659998059957775277278548 No 5 >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Probab=4.95 E-value=1.1e+02 Score=12.62 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=16.4 Q ss_pred CCEEEEEECCCCCCCHH-------HHEEEEEEE Q ss_conf 62999984010341000-------000133455 Q gi|254780994|r 3 GDIFLVHRRDEMDSKNF-------SKAIEVRYT 28 (53) Q Consensus 3 gdiflvhrrdemdsknf-------skaievryt 28 (53) .++.++|||+++..... ++.|++.+. T Consensus 54 ~~V~li~r~~~~~~~~~~~~~~~~~~~I~v~~~ 86 (126) T d1fl2a2 54 EHVTLLEFAPEMKADQVLQDKLRSLKNVDIILN 86 (126) T ss_dssp SEEEEECSSSSCCSCHHHHHHHHTCTTEEEESS T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCEEEECC T ss_conf 741798505510111000111124543268727 No 6 >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=4.17 E-value=1.3e+02 Score=12.24 Aligned_cols=14 Identities=29% Similarity=0.892 Sum_probs=10.9 Q ss_pred CCEEEEEECCCCCC Q ss_conf 62999984010341 Q gi|254780994|r 3 GDIFLVHRRDEMDS 16 (53) Q Consensus 3 gdiflvhrrdemds 16 (53) ..+.++||||++.. T Consensus 58 ~~V~li~r~~~~ra 71 (130) T d1vdca2 58 SKVYIIHRRDAFRA 71 (130) T ss_dssp SEEEEECSSSSCCS T ss_pred CCEEEEEECCCCCC T ss_conf 71799984565562 No 7 >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Probab=3.81 E-value=80 Score=13.28 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=22.3 Q ss_pred CCCEEEEEECCCCCCCHHHHEEEEEEEEEECCCCEEEEECC Q ss_conf 86299998401034100000013345554135826997365 Q gi|254780994|r 2 NGDIFLVHRRDEMDSKNFSKAIEVRYTRLLEDNPILIGMGE 42 (53) Q Consensus 2 ngdiflvhrrdemdsknfskaievrytrllednpiligmge 42 (53) +-++.++++.+..=++.|++.+--...+.++++.|-+-++. T Consensus 53 g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~ 93 (121) T d1d7ya2 53 GVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFER 93 (121) T ss_dssp TCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESC T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC T ss_conf 61699996066211445888999999999997794999698 No 8 >d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]} Probab=3.70 E-value=70 Score=13.57 Aligned_cols=6 Identities=83% Similarity=1.924 Sum_probs=0.0 Q ss_pred HHHHHH Q ss_conf 153232 Q gi|254780994|r 43 GILFCG 48 (53) Q Consensus 43 gilfcg 48 (53) ||+||| T Consensus 63 GIliCG 68 (145) T d1o1xa_ 63 GILLCG 68 (145) T ss_dssp EEEEES T ss_pred EEEECC T ss_conf 998058 No 9 >d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=3.69 E-value=1.4e+02 Score=11.98 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=0.0 Q ss_pred CCEEEEEECCCCCCCHHHHEEEEEEEEEECC----CCEEEEEC Q ss_conf 6299998401034100000013345554135----82699736 Q gi|254780994|r 3 GDIFLVHRRDEMDSKNFSKAIEVRYTRLLED----NPILIGMG 41 (53) Q Consensus 3 gdiflvhrrdemdsknfskaievrytrlled----npiligmg 41 (53) |+.+.+...++.....-++.|.+.|..+.++ ..||+.-| T Consensus 19 G~~v~l~~~~~~~~~~~~~~i~v~y~~l~~~v~~G~~IliDDG 61 (101) T d1a3xa1 19 NHEMIFTTDDKYAKACDDKIMYVDYKNITKVISAGRIIYVDDG 61 (101) T ss_dssp SCEEEEECCSSSSSSBCTTCEEBSCTTHHHHCCTTCEEEETTT T ss_pred CCEEEEEECCCCCCCCCCCEEECCCHHHHHHCCCCCEEEECCC T ss_conf 9999998252025888756996360772543359999998288 No 10 >d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.67 E-value=1.5e+02 Score=11.77 Aligned_cols=8 Identities=63% Similarity=0.999 Sum_probs=0.0 Q ss_pred CCEEEEEE Q ss_conf 62999984 Q gi|254780994|r 3 GDIFLVHR 10 (53) Q Consensus 3 gdiflvhr 10 (53) |||.++|| T Consensus 71 GDII~l~r 78 (140) T d1xjva1 71 GDIVRFHR 78 (140) T ss_dssp TCEEEEEE T ss_pred CCEEEEEE T ss_conf 98999977 Done!