HHsearch alignment of GI: 254780995 and MMDB domain: 1ako_A_
>1ako_A (A:) Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli}
Probab=99.25 E-value=1.4e-11 Score=81.74 Aligned_cols=114 Identities=18% Similarity=0.079 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHH---------------------HHHCCCCCCCH----HHCCC
Q ss_conf 999999999998511699889996147776883100278---------------------76326554100----00257
Q gi|254780995|r 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------------WQKMDPDGLLI----RFPQE 58 (125)
Q Consensus 4 ~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~---------------------~~~l~~~~~~~----~~~~~ 58 (125)
+|...+.+.+.+......|+|++||||..+......... ...+...+... .....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~i~~gD~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 206 (268)
T 1ako_A 127 QFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQT 206 (268)
T ss_dssp HHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCC
T ss_conf 89999999999877427866764200247506543200313431001466677888999999997089801333327644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 676871038875543335521012100257321--1543024741125867887564999996
Q gi|254780995|r 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYD 119 (125)
Q Consensus 59 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 119 (125)
...++++..... ........+||++++++++ ++....+.........+|||+||+++|.
T Consensus 207 ~~~~~~~~~~~~--~~~~~~~~rID~I~~s~~~~~~~~~~~i~~~~~~~~~~SDH~PV~a~~~ 267 (268)
T 1ako_A 207 ADRFSWFDYRSK--GFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp CSCCSBCCTTTT--HHHHTCCBCCEEEEEEHHHHTTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred CCCCCCCCCCCC--CCCCCCCEEEEEEEECHHHHHHCEEEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf 465523576666--5306997076899966289634049999321018999998124799997