HHsearch alignment of GI: 254780995 and MMDB domain: 1hd7_A_
>1hd7_A (A:) DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
Probab=99.32 E-value=3.1e-12 Score=85.29 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHH----------------HCCCCC----CCHHHCCCCCCC
Q ss_conf 899999999999851169988999614777688310027876----------------326554----100002576768
Q gi|254780995|r 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ----------------KMDPDG----LLIRFPQEKEST 62 (125)
Q Consensus 3 ~~Q~~~L~~~i~~~~~~~~pvIi~GDFN~~~~~~~~~~~~~~----------------~l~~~~----~~~~~~~~~~~~ 62 (125)
.+|.+.|.+++.+. ..+.|+|++||||..+.+......... .+.... ...........+
T Consensus 186 ~~~~~~l~~~~~~~-~~~~~~i~~GD~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 264 (318)
T 1hd7_A 186 QRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAY 264 (318)
T ss_dssp HHHHHHHHHHHHHH-HHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCC
T ss_pred HHHHHHHHHHHHHH-HCCCCEEECCCCCCCCCHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCC
T ss_conf 99888999998886-22775375066344651655225555035544562777878889872688443441179999840
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCE--EEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 710388755433355210121002573211--5430247411258678875649999961
Q gi|254780995|r 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCPLTIEYDF 120 (125)
Q Consensus 63 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~SDH~PV~~~l~f 120 (125)
+|+....... ....+.+||++++++++. +..+.+. ...++|||+||+++|+|
T Consensus 265 t~~~~~~~~~--~~~~~~RID~I~~s~~~~~~~~~~~i~----~~~~~SDH~PV~~~l~l 318 (318)
T 1hd7_A 265 TFWTYMMNAR--SKNVGWRLDYFLLSHSLLPALCDSKIR----SKALGSDHCPITLYLAL 318 (318)
T ss_dssp SBCCSGGGHH--HHTCCBCCEEEEECGGGGGGEEEEEEC----TTCCSSSBCCEEEEECC
T ss_pred CCCCCCCCCC--CCCCCEEEEEEEECHHHHHHEEEEEEC----CCCCCCCCCCEEEEEEC
T ss_conf 2036556865--158987668999573786221689988----89999980168999969