HHsearch alignment of GI: 254780995 and MMDB domain: 2ei9_A_
>2ei9_A (A:) Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=98.92 E-value=1.9e-09 Score=70.40 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=55.5
Q ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCCHHH---------------HHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 985116998899961477768831002787---------------63265541000025767687103887554333552
Q gi|254780995|r 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFW---------------QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78 (125)
Q Consensus 14 ~~~~~~~~pvIi~GDFN~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 78 (125)
.-+...+.|+||+||||..+...+..+... ..+.+.+..+.. ...++....+...
T Consensus 113 ~~~~~~~~~~ii~GDfNva~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~~l~D~~----------r~~~~~t~~~~~~ 182 (240)
T 2ei9_A 113 ILDRLRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGARRLVVHN----------ADGHLPTFSTANG 182 (240)
T ss_dssp HHHHTTTSCEEEEEECCCCCGGGTCCHHHHSSSCHHHHHHHHHHHHHHHHTTCEECC----------CTTCCCSEEETTE
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHCC----------CCCCCCCCCCCCC
T ss_conf 874267887798120023570440453222356556532356789999745400126----------7777554437997
Q ss_pred CCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 10121002573211543024741125867887564999996164
Q gi|254780995|r 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122 (125)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f~~ 122 (125)
..++++++++.++....... .....||||||+++++...
T Consensus 183 ~~r~D~~~~s~~w~~~~~~~-----~~~~~SDH~Pi~l~~~~~~ 221 (240)
T 2ei9_A 183 ESYVDVTLSTRGVRVSEWRV-----TNESSSDHRLIVFGVGGGT 221 (240)
T ss_dssp EECCEEEEECTTCCEEEEEE-----CSCCSSSBCCEEEEEEC--
T ss_pred CEECCEEEECCCCCEEEEEE-----CCCCCCCCCCEEEEEECCC
T ss_conf 70507699479751445796-----4899999600899996787