HHsearch results for GI: 254780995 and protein with PDBid: 1vyb_A
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.99 E-value=1.9e-09 Score=69.55 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=49.0
Q ss_pred HHHHHHHHH-CCCCCEEEEEECCCCCCCCCCCC---------HHHHHCCCCCC---CHHHCCCCCCCCCCCCCCC--CCC
Q ss_conf 999999851-16998899961477768831002---------78763265541---0000257676871038875--543
Q gi|254780995|r 9 LKKWADQKI-KTGIPFVIAGDFNRKINSIGDTD---------DFWQKMDPDGL---LIRFPQEKESTCNVIKRNK--SSL 73 (125)
Q Consensus 9 L~~~i~~~~-~~~~pvIi~GDFN~~~~~~~~~~---------~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~--~~~ 73 (125)
+.+++.... ..+.|+|++||||..+...+... .....+...+. ...........+++..... .++
T Consensus 125 ~~~~~~~~~~~~~~~~il~GDfN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~d~~r~~~~~~~~~t~~~~~~~~~~rI 204 (238)
T 1vyb_A 125 IKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSKI 204 (238)
T ss_dssp HHHHHHHTTTTCCTTEEEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTTTEEECC
T ss_pred HHHHHHHHHHHCCCCCEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCEE
T ss_conf 88889999863036501101004687455423500021356888998863035531212013687555104788978626
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 3355210121002573211543024741125867887564999996
Q gi|254780995|r 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119 (125)
Q Consensus 74 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 119 (125)
||++++..+.. ++..+.+. ...+|||+||+++|.
T Consensus 205 D~i~~s~~~~~-------~~~~~~v~-----~~~~SDH~pv~~~Lk 238 (238)
T 1vyb_A 205 DHIVGSKALLS-------KCKRTEII-----TNYLSDHSAIKLELR 238 (238)
T ss_dssp EEEEEEGGGGG-------GEEEEEEE-----CCSSSSSCEEEEEEC
T ss_pred EEEEECCHHHH-------HCCEEEEC-----CCCCCCCCCEEEEEC
T ss_conf 79997847970-------26299968-----997998201899969