BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780995|ref|YP_003065408.1|
Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
asiaticus str. psy62]
         (125 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 125

 Score =  257 bits (656), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
           MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE
Sbjct: 1   MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60

Query: 61  STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
           STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF
Sbjct: 61  STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120

Query: 121 EKGNV 125
           EKGNV
Sbjct: 121 EKGNV 125


>gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 304

 Score =  145 bits (365), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 92/122 (75%), Gaps = 2/122 (1%)

Query: 1   MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
           +LSQQ +WLK W  QK ++ +PFVIAGDFNRKIN +G+ DDFW+ +DP+  LIRFP+EK+
Sbjct: 183 LLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKD 242

Query: 61  STCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
           S CN  K  RNK  +DYFV+D++   FLI  SFS + Y++ D+ +R  +LS HCP++I+Y
Sbjct: 243 SRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302

Query: 119 DF 120
           DF
Sbjct: 303 DF 304


>gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 231

 Score = 70.5 bits (171), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 2/61 (3%)

Query: 1   MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGLLIRFPQE 58
           ML+ Q  WLK+W DQK    +PF+IAGDFNRKIN    G  D+ WQK++ D  L+R P +
Sbjct: 159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHK 218

Query: 59  K 59
           K
Sbjct: 219 K 219


>gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 343

 Score = 23.5 bits (49), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 9  LKKWADQKIKTGIPFVIAGD 28
          LK WA ++I    PF+  GD
Sbjct: 23 LKAWASRQITAIPPFIYIGD 42


>537021.9.peg.393_1 
          Length = 150

 Score = 21.9 bits (45), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 11  KWADQKIKTGIPFVIAGDFNRKINSI 36
           +  DQ+    +  V+AG  N+KI S+
Sbjct: 88  RITDQQTAEVVEMVLAGSINKKIVSL 113


>gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 529

 Score = 21.9 bits (45), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 54  RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
           R P+E E    +I   K      +I+R   +FLI N
Sbjct: 330 RLPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHN 365


>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 480

 Score = 21.6 bits (44), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 12/56 (21%), Positives = 31/56 (55%)

Query: 52  LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
           L+    + ++ CN   +  +S+   + + DNKN++  ++ + +S +   + T+RS+
Sbjct: 3   LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE 58


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,088
Number of Sequences: 1233
Number of extensions: 3622
Number of successful extensions: 16
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 11
length of query: 125
length of database: 328,796
effective HSP length: 64
effective length of query: 61
effective length of database: 249,884
effective search space: 15242924
effective search space used: 15242924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)