BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter asiaticus str. psy62] (125 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter asiaticus str. psy62] Length = 125 Score = 257 bits (656), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE Sbjct: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60 Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF Sbjct: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120 Query: 121 EKGNV 125 EKGNV Sbjct: 121 EKGNV 125 >gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62] Length = 304 Score = 145 bits (365), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 67/122 (54%), Positives = 92/122 (75%), Gaps = 2/122 (1%) Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60 +LSQQ +WLK W QK ++ +PFVIAGDFNRKIN +G+ DDFW+ +DP+ LIRFP+EK+ Sbjct: 183 LLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKD 242 Query: 61 STCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118 S CN K RNK +DYFV+D++ FLI SFS + Y++ D+ +R +LS HCP++I+Y Sbjct: 243 SRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302 Query: 119 DF 120 DF Sbjct: 303 DF 304 >gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62] Length = 231 Score = 70.5 bits (171), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 2/61 (3%) Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGLLIRFPQE 58 ML+ Q WLK+W DQK +PF+IAGDFNRKIN G D+ WQK++ D L+R P + Sbjct: 159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHK 218 Query: 59 K 59 K Sbjct: 219 K 219 >gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 23.5 bits (49), Expect = 1.3, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 12/20 (60%) Query: 9 LKKWADQKIKTGIPFVIAGD 28 LK WA ++I PF+ GD Sbjct: 23 LKAWASRQITAIPPFIYIGD 42 >537021.9.peg.393_1 Length = 150 Score = 21.9 bits (45), Expect = 3.3, Method: Compositional matrix adjust. Identities = 9/26 (34%), Positives = 15/26 (57%) Query: 11 KWADQKIKTGIPFVIAGDFNRKINSI 36 + DQ+ + V+AG N+KI S+ Sbjct: 88 RITDQQTAEVVEMVLAGSINKKIVSL 113 >gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 529 Score = 21.9 bits (45), Expect = 4.1, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 17/36 (47%) Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89 R P+E E +I K +I+R +FLI N Sbjct: 330 RLPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHN 365 >gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 21.6 bits (44), Expect = 4.6, Method: Compositional matrix adjust. Identities = 12/56 (21%), Positives = 31/56 (55%) Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107 L+ + ++ CN + +S+ + + DNKN++ ++ + +S + + T+RS+ Sbjct: 3 LLAVFNKAQNICNNASQQFASIVRNIENADNKNYVRRDTMTTISPENVTVVTQRSE 58 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.137 0.416 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,088 Number of Sequences: 1233 Number of extensions: 3622 Number of successful extensions: 16 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 11 length of query: 125 length of database: 328,796 effective HSP length: 64 effective length of query: 61 effective length of database: 249,884 effective search space: 15242924 effective search space used: 15242924 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 33 (17.3 bits)