Query gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 109
No_of_seqs 3 out of 5
Neff 1.6
Searched_HMMs 33803
Date Wed Jun 1 20:03:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780996.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2imq_X Salivary nitrophorin; 71.9 8.9 0.00026 20.1 6.0 58 43-102 82-139 (282)
2 >1i9z_A Synaptojanin, phosphat 58.2 16 0.00049 18.5 5.4 61 42-102 93-153 (304)
3 >2ddr_A Sphingomyelin phosphod 45.9 26 0.00077 17.3 3.7 55 47-104 103-157 (306)
4 >1zwx_A SMCL, sphingomyelinase 34.0 40 0.0012 16.2 5.1 37 67-103 120-156 (301)
5 >1z47_A CYSA, putative ABC-tra 32.4 11 0.00033 19.5 0.1 53 10-67 49-101 (237)
6 >2j41_A Guanylate kinase; GMP, 32.1 17 0.00051 18.4 1.0 70 10-79 14-91 (158)
7 >1sr9_A 2-isopropylmalate synt 30.0 10 0.0003 19.7 -0.5 27 58-90 35-61 (61)
8 >1z6g_A Guanylate kinase; stru 28.5 19 0.00055 18.2 0.6 70 10-79 31-110 (169)
9 >1l2t_A Hypothetical ABC trans 25.0 6.2 0.00018 21.0 -2.3 57 9-65 38-95 (235)
10 >3ckc_A SUSD; TPR repeat, carb 23.9 29 0.00085 17.1 0.9 13 4-16 11-23 (51)
11 >1lni_A RNAse SA, guanyl-speci 22.9 44 0.0013 16.0 1.7 36 72-107 59-94 (96)
12 >2ibn_A Inositol oxygenase; re 21.1 13 0.00039 19.1 -1.3 40 14-56 3-42 (215)
13 >1eex_A Propanediol dehydratas 20.7 15 0.00044 18.8 -1.1 48 22-71 77-145 (268)
14 >2gdt_A Leader protein; P65 ho 20.5 46 0.0014 15.9 1.4 48 43-90 37-84 (116)
15 >3dhw_C Methionine import ATP- 20.3 8 0.00024 20.4 -2.5 58 10-67 39-96 (245)
No 1
>>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} (X:)
Probab=71.85 E-value=8.9 Score=20.09 Aligned_cols=58 Identities=2% Similarity=-0.064 Sum_probs=39.7
Q ss_pred HCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf 000124456400011333224787710123000771368999997890899998741013
Q gi|254780996|r 43 SDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSS 102 (109)
Q Consensus 43 ~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKSf 102 (109)
..+.++|-.|+....- .+.+.-..-......+++.+|-+-+.++|+++.++++||.+.
T Consensus 82 ~g~~~~i~~k~~~~~~--~~~v~~~~~~~~~~~~~kg~v~~~~~~~~~~i~~in~Hl~a~ 139 (282)
T 2imq_X 82 ETMGLTVYCLEKHLDQ--NTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDE 139 (282)
T ss_dssp SSEEEEEEEEGGGCCT--TTCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTT
T ss_pred CCCEEEEEECCCCCCC--EEEEEEEEEEEEEEECCCCCEEEEEEECCEEEEEECCCCCHH
T ss_conf 2767899964310254--267567678986677189977788876667776440332224
No 2
>>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} (A:18-321)
Probab=58.19 E-value=16 Score=18.52 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=44.9
Q ss_pred HHCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf 1000124456400011333224787710123000771368999997890899998741013
Q gi|254780996|r 42 ESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSS 102 (109)
Q Consensus 42 ~~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKSf 102 (109)
...+.+++-+|+..+...+.-..--...++...+|+..+|-+-+.+++..+-++++||.+.
T Consensus 93 ~~~~~i~vf~r~~~~~~i~~~~~~~v~~g~~~~~~~kG~v~~~~~~~~~~i~~i~~hlp~~ 153 (304)
T 1i9z_A 93 LVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAG 153 (304)
T ss_dssp ETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred EEEEEEEEEEEHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECHHCC
T ss_conf 7128999998255332344203324653455311467636999998894799998604116
No 3
>>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} (A:)
Probab=45.86 E-value=26 Score=17.34 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=35.2
Q ss_pred EEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEEEEE
Q ss_conf 2445640001133322478771012300077136899999789089999874101353
Q gi|254780996|r 47 TAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCV 104 (109)
Q Consensus 47 TAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKSfCf 104 (109)
.++..|.....+.+...+ ........+.|..+.+-++..|+.+++.++||++..-
T Consensus 103 ~~~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~ 157 (306)
T 2ddr_A 103 VAIVSKWPIAEKIQYVFA---KGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDS 157 (306)
T ss_dssp CEEEESSCEEEEEEEECS---CCC----CCCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred EEEEEEECCCCCCEEEEE---CCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCC
T ss_conf 799987523333002310---2356542231069999980699189999932433555
No 4
>>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} (A:)
Probab=34.00 E-value=40 Score=16.23 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=30.6
Q ss_pred CCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEEEE
Q ss_conf 7101230007713689999978908999987410135
Q gi|254780996|r 67 APQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSC 103 (109)
Q Consensus 67 ~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKSfC 103 (109)
...........|..+..-+.+.++.+.++++||++-.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Hl~~~~ 156 (301)
T 1zwx_A 120 QRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADD 156 (301)
T ss_dssp SCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCC
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC
T ss_conf 5455532335741799998069928999983145554
No 5
>>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} (A:1-237)
Probab=32.37 E-value=11 Score=19.47 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=40.7
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCC
Q ss_conf 7377887246678752385211112357776510001244564000113332247877
Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPA 67 (109)
Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~ 67 (109)
-|||||...-..+-|+..-++=++...| .++..--..|++...|.|...+.+.
T Consensus 49 ~sGsGKSTll~~i~Gl~~p~~G~I~i~G-----~~i~~~~~~~r~ig~vfQ~~~l~~~ 101 (237)
T 1z47_A 49 PSGSGKTTILRLIAGLERPTKGDVWIGG-----KRVTDLPPQKRNVGLVFQNYALFQH 101 (237)
T ss_dssp STTSSHHHHHHHHHTSSCCSEEEEEETT-----EECTTCCGGGSSEEEECGGGCCCTT
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECC-----EECCCCCHHHCCEEEECCCCHHCCC
T ss_conf 9986499999999749998962999999-----9999999888885798746332213
No 6
>>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} (A:1-38,A:88-207)
Probab=32.08 E-value=17 Score=18.40 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=42.5
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCC--------CCCCCCCCHHCCCCE
Q ss_conf 7377887246678752385211112357776510001244564000113332247--------877101230007713
Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYP--------LPAPQEITPRMGNRK 79 (109)
Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYp--------l~~~~~~~sraGnRr 79 (109)
-|||||...-..+-|..+++---.-..=-+--+...+--+-+--..+.-|++.|+ ||.++.+-.|.-.|.
T Consensus 14 ~~g~gk~t~~~~~~~~~~~~~~~~~~~I~~~l~~Gk~vIldvd~qg~~~lk~~~~~pi~IfI~pps~~~L~~RL~~Rg 91 (158)
T 2j41_A 14 PSGVGKGTVRKRIFEDPSTSYKYSIQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRG 91 (158)
T ss_dssp STTSCHHHHHHHHHHCTTCCEECCCHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC------------
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHC
T ss_conf 899999999999984697562354688999996699478646431488998757981899986363899998988632
No 7
>>1sr9_A 2-isopropylmalate synthase; TIM barrel, transferase; 2.00A {Mycobacterium tuberculosis} (A:371-431)
Probab=29.98 E-value=10 Score=19.73 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=19.1
Q ss_pred HHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCE
Q ss_conf 333224787710123000771368999997890
Q gi|254780996|r 58 VLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQ 90 (109)
Q Consensus 58 vLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~ 90 (109)
.-++-|+|++|+++- |.-|-+|-||-|
T Consensus 35 ~W~vPYLPiDP~DiG------R~YeavIRVNSQ 61 (61)
T 1sr9_A 35 LWQVPYLPIDPRDVG------RTYEAVIRVNSQ 61 (61)
T ss_dssp CCCCTTCSSCGGGGT------CCCEECC-----
T ss_pred CCCCCCCCCCHHHCC------CCCEEEEECCCC
T ss_conf 565565326979868------501015623553
No 8
>>1z6g_A Guanylate kinase; structural genomics, SGC, structural genomics consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum 3D7} (A:1-55,A:105-218)
Probab=28.53 E-value=19 Score=18.20 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=35.7
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCC----------CCCCCCCHHCCCCE
Q ss_conf 73778872466787523852111123577765100012445640001133322478----------77101230007713
Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPL----------PAPQEITPRMGNRK 79 (109)
Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl----------~~~~~~~sraGnRr 79 (109)
-|||||...-..+-|.++....-...+=-+--+...+--+-+--.++..|..+++. |..+.+-.|+-+|.
T Consensus 31 ~sG~GKsTll~~l~g~~~~~~~~~i~sI~~v~~~gk~~ildv~~qg~~~lk~~~l~p~vi~Ifi~pps~~~L~~RL~~R~ 110 (169)
T 1z6g_A 31 PSGVGKGTLIKKLLNEFPNYFYFSVSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 110 (169)
T ss_dssp STTSSHHHHHHHHHHHSTTTEEECCHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCC
T ss_conf 99999999999999609886686675301110012443224662453200101478856999971364899986543012
No 9
>>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} (A:)
Probab=25.04 E-value=6.2 Score=21.02 Aligned_cols=57 Identities=23% Similarity=0.188 Sum_probs=39.8
Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECC-HHHHHHHHCCC
Q ss_conf 9737788724667875238521111235777651000124456400-01133322478
Q gi|254780996|r 9 FYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKD-VARVLQVSYPL 65 (109)
Q Consensus 9 fy~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~-~~rvLQ~SYpl 65 (109)
=-|||||...--.+-|...-++=.+.+.|.+..+-+-...-.+|+. ..-|.|.+-+.
T Consensus 38 GpSGsGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~r~~~ig~vfQ~~~L~ 95 (235)
T 1l2t_A 38 GPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp CSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred CCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEECCCCCCC
T ss_conf 9999819999999965999986389999999887998898775267089986642006
No 10
>>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar binding protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron vpi-5482} (A:346-396)
Probab=23.90 E-value=29 Score=17.09 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=8.6
Q ss_pred CEEEEEECCCCCC
Q ss_conf 5289997377887
Q gi|254780996|r 4 DKWYIFYSGCGKN 16 (109)
Q Consensus 4 ~~w~ify~~~~~~ 16 (109)
|.--.||||||-.
T Consensus 11 DdRAlfYsg~ggg 23 (51)
T 3ckc_A 11 DDRALLYSGVGGG 23 (51)
T ss_dssp CTTCCEECSSTTS
T ss_pred CCCCEEEECCCCC
T ss_conf 7651253125677
No 11
>>1lni_A RNAse SA, guanyl-specific ribonuclease SA; hydrolase; 1.00A {Streptomyces aureofaciens} (A:)
Probab=22.91 E-value=44 Score=15.97 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=30.1
Q ss_pred CHHCCCCEEEEEEEEECCEEEEEEEEEEEEEEEEEE
Q ss_conf 300077136899999789089999874101353430
Q gi|254780996|r 72 TPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKK 107 (109)
Q Consensus 72 ~sraGnRraVElL~Eidg~KiWlLdiHLKSfCflds 107 (109)
++..++|-+--|++--++..+|.-+=|-+|||-++.
T Consensus 59 tp~~~~RGa~RIV~g~~~g~~YYT~DHY~sF~~i~~ 94 (96)
T 1lni_A 59 TPGARTRGTRRIITGEATQEDYYTGDHYATFSLIDQ 94 (96)
T ss_dssp CTTCSSCCSCEEEEESSTTCEEEESSTTSCCEEEET
T ss_pred CCCCCCCCCCEEEECCCCCCEEECCCHHHHHEEHHC
T ss_conf 999999998769978999888873768650601404
No 12
>>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} (A:32-246)
Probab=21.15 E-value=13 Score=19.09 Aligned_cols=40 Identities=23% Similarity=0.133 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHH
Q ss_conf 8872466787523852111123577765100012445640001
Q gi|254780996|r 14 GKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVA 56 (109)
Q Consensus 14 ~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~ 56 (109)
++-.+||+++.+-+.----+--++| .|+..||-+||++--
T Consensus 3 ~~mti~ea~e~Ln~lvDeSDd~~qi---~H~lQTAEaiR~d~~ 42 (215)
T 2ibn_A 3 KKXTVXEAVDLLDGLVDESDDFPNS---FHAFQTAEGIRKAHP 42 (215)
T ss_dssp CEECHHHHHHHGGGCCCTTC---CC---CHHHHHHHHHHHHHH
T ss_pred CEEEHHHHHHHHHHHCCCCCCCCCC---HHHHHHHHHHHHHHH
T ss_conf 5057999999998623887888870---169999999999997
No 13
>>1eex_A Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} (A:137-216,A:367-554)
Probab=20.68 E-value=15 Score=18.78 Aligned_cols=48 Identities=31% Similarity=0.428 Sum_probs=32.2
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHCE---------------------EEEEEEECCHHHHHHHHCCCCCCCCC
Q ss_conf 875238521111235777651000---------------------12445640001133322478771012
Q gi|254780996|r 22 MKGCLNFSSYDDNSGNIDTDESDI---------------------NTAIAIRKDVARVLQVSYPLPAPQEI 71 (109)
Q Consensus 22 ~kr~~n~sk~D~n~~~~~td~~di---------------------hTAIaiRK~~~rvLQ~SYpl~~~~~~ 71 (109)
|.|..| .||--..|||.|--|+ ...|++|.+++|.+|--|--++--.+
T Consensus 77 mrG~~P--nYDNmFAgSN~daeD~DDy~vlQRDl~vdgGLrpV~ee~viavRnkAA~AiQAVF~~LGlp~i 145 (268)
T 1eex_A 77 MLGHVP--NYDNMFAGSNEDAEDFDDYNVIQRDLKVDGGLRPVREEDVIAIRNKAARALQAVFAGMGLPPI 145 (268)
T ss_dssp HTTCSC--GGGCTTSCCSSCGGGHHHHHHHHHHHTCCCSCCCCCHHHHHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred HHCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 301087--754444667888566447888888642478864288999999999999999999986599988
No 14
>>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} (A:)
Probab=20.51 E-value=46 Score=15.89 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=38.4
Q ss_pred HCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCE
Q ss_conf 000124456400011333224787710123000771368999997890
Q gi|254780996|r 43 SDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQ 90 (109)
Q Consensus 43 ~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~ 90 (109)
+..-.-....|++.--|.+.|......+..|.--..+.|||.-|.||-
T Consensus 37 ngtcglvelekgvlpqleqpyvfikrsdalstnhghkvvelvaemdgi 84 (116)
T 2gdt_A 37 NGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGI 84 (116)
T ss_dssp HTCEEEECCCTTSGGGSCSCEEEEECCSSCCCCCSSCCCEEEEESSCT
T ss_pred CCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 785106873136563445866999804333356783321322342461
No 15
>>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} (C:1-245)
Probab=20.28 E-value=8 Score=20.36 Aligned_cols=58 Identities=12% Similarity=0.046 Sum_probs=40.7
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCC
Q ss_conf 7377887246678752385211112357776510001244564000113332247877
Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPA 67 (109)
Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~ 67 (109)
-|||||...-..+-++..-++=.+.+.|.|...-.-.....+|+...-|.|..-+.+.
T Consensus 39 ~SGsGKSTLl~~i~gl~~p~~G~i~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~l~~~ 96 (245)
T 3dhw_C 39 ASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 96 (245)
T ss_dssp STTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTT
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 9998699999999659999973899999984558702216775165138403001787
Done!