Query gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 109 No_of_seqs 3 out of 5 Neff 1.6 Searched_HMMs 23785 Date Tue May 31 23:09:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780996.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3mtc_A Type II inositol-1,4,5- 92.1 0.29 1.2E-05 27.9 5.7 60 43-102 88-147 (313) 2 3nr8_B Phosphatidylinositol-3, 86.4 0.64 2.7E-05 25.9 3.9 60 42-101 89-148 (316) 3 1i9z_A Synaptojanin, phosphati 81.3 2.7 0.00011 22.3 5.3 59 43-101 111-169 (347) 4 2xsw_A 72 kDa inositol polypho 71.7 6.1 0.00026 20.2 5.0 59 43-101 96-154 (357) 5 1mv5_A LMRA, multidrug resista 47.4 3.2 0.00013 21.8 -0.0 56 10-68 36-91 (243) 6 1zwx_A SMCL, sphingomyelinase- 40.2 22 0.00095 16.8 5.1 32 72-103 125-156 (301) 7 2ddr_A Sphingomyelin phosphodi 39.6 23 0.00097 16.8 4.6 32 72-103 125-156 (306) 8 3i41_A Beta-hemolysin; beta to 37.7 25 0.001 16.6 4.7 31 74-104 146-176 (317) 9 2ixe_A Antigen peptide transpo 36.0 3.5 0.00015 21.6 -1.3 56 10-68 53-108 (271) 10 2ff7_A Alpha-hemolysin translo 33.4 3.8 0.00016 21.3 -1.4 56 10-68 43-98 (247) 11 3cyp_B Chemotaxis protein MOTB 28.1 17 0.00071 17.5 1.2 26 63-89 92-117 (138) 12 2oo4_A Notch 2, neurogenic loc 26.9 30 0.0013 16.1 2.2 23 70-92 167-189 (234) 13 3ldt_A Outer membrane protein, 25.9 38 0.0016 15.4 2.7 25 62-87 136-160 (169) 14 1l2t_A Hypothetical ABC transp 24.2 4.8 0.0002 20.8 -2.2 55 10-64 39-94 (235) 15 1lni_A RNAse SA, guanyl-specif 24.1 29 0.0012 16.2 1.7 35 72-106 59-93 (96) 16 3dhw_C Methionine import ATP-b 21.8 4.8 0.0002 20.8 -2.6 55 8-62 37-91 (343) 17 2c4b_A Barnase mcoeeti fusion; 20.1 40 0.0017 15.3 1.8 38 70-108 74-111 (143) 18 3nh6_A ATP-binding cassette SU 20.0 5.3 0.00022 20.5 -2.7 54 11-67 89-142 (306) 19 2onk_A Molybdate/tungstate ABC 20.0 20 0.00084 17.1 0.2 48 10-62 32-79 (240) No 1 >3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} Probab=92.08 E-value=0.29 Score=27.95 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=45.5 Q ss_pred HCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEEE Q ss_conf 000124456400011333224787710123000771368999997890899998741013 Q gi|254780996|r 43 SDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSS 102 (109) Q Consensus 43 ~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKSf 102 (109) ..+..+|.+|++.........+.....++....|+..+|.+.+++++.++.++++||-+. T Consensus 88 ~g~~~~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kg~~~~~~~i~~~~~~~in~hl~~~ 147 (313) T 3mtc_A 88 VGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAH 147 (313) T ss_dssp TTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCS T ss_pred CEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCEEEEEEEECCCCC T ss_conf 316999998166566434566642544788766888519999999999999999626888 No 2 >3nr8_B Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; structural genomics consortium, SGC, trisphosphate 5-phosphatase 2, SHIP2, INPPL1, SHIP-2; 2.80A {Homo sapiens} Probab=86.38 E-value=0.64 Score=25.91 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=42.2 Q ss_pred HHCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEE Q ss_conf 100012445640001133322478771012300077136899999789089999874101 Q gi|254780996|r 42 ESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKS 101 (109) Q Consensus 42 ~~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKS 101 (109) ...+.++|-+|+..+......-.---..|.....||..+|-+-+++++..+.+++.||.+ T Consensus 89 ~~g~~~~vf~r~~~~~~i~~v~~~~~~~G~~~~~~nkg~v~i~~~~~~~~i~~vn~hl~~ 148 (316) T 3nr8_B 89 LWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTS 148 (316) T ss_dssp ETTEEEEEEECGGGGGGEEEEEEEEEECC------CCEEEEEEEEETTEEEEEEEEECCC T ss_pred CCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCEEEEEEEECCCC T ss_conf 232379999616445644431332122388877688733999999899889999965667 No 3 >1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Probab=81.29 E-value=2.7 Score=22.25 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=38.9 Q ss_pred HCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEE Q ss_conf 00012445640001133322478771012300077136899999789089999874101 Q gi|254780996|r 43 SDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKS 101 (109) Q Consensus 43 ~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKS 101 (109) ..+..+|-+|++...-...--.--..-+....+||..+|.+-+.+.++.+.+.+.||-+ T Consensus 111 ~g~~l~vf~r~~~~~~i~~v~~~~v~~g~~g~~gnKGaV~i~~~i~~~~l~fvn~HL~a 169 (347) T 1i9z_A 111 VGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAA 169 (347) T ss_dssp TTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCC T ss_pred CCEEEEEEEECHHHCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEECCCCC T ss_conf 32399999986576257731110898256871278526999999989999999706787 No 4 >2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Probab=71.69 E-value=6.1 Score=20.15 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=39.5 Q ss_pred HCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEE Q ss_conf 00012445640001133322478771012300077136899999789089999874101 Q gi|254780996|r 43 SDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKS 101 (109) Q Consensus 43 ~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKS 101 (109) ..|..++-+|+........--.---..|+...+||..+|-+-+.++|+.+.+++.||-. T Consensus 96 ~gi~l~Vfvr~~~~~~v~~v~~~~v~~G~~g~~gnKG~v~i~~~l~~~~l~fvn~HL~a 154 (357) T 2xsw_A 96 GVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTS 154 (357) T ss_dssp TTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCC T ss_pred CCEEEEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEECCEEEEEEEEECCC T ss_conf 01299999975655226766423672177888788853999999998789999996389 No 5 >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Probab=47.40 E-value=3.2 Score=21.82 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=42.7 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC Q ss_conf 73778872466787523852111123577765100012445640001133322478771 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP 68 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~ 68 (109) -|||||...-..+-|.++.++=.+...|.+...-+.+ .+|+...-|.|..++..++ T Consensus 36 ~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~---~lr~~i~~v~Q~~~lf~~T 91 (243) T 1mv5_A 36 PSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE---NWRSQIGFVSQDSAIMAGT 91 (243) T ss_dssp CTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCS---CCTTTCCEECCSSCCCCEE T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH---HHHHHEEEECCCCCCCCCC T ss_conf 9987399999999678768974899999995609999---9985148992687357656 No 6 >1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Probab=40.19 E-value=22 Score=16.81 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=26.7 Q ss_pred CHHCCCCEEEEEEEEECCEEEEEEEEEEEEEE Q ss_conf 30007713689999978908999987410135 Q gi|254780996|r 72 TPRMGNRKTVELLIEIDDQKVWLLNVHLKSSC 103 (109) Q Consensus 72 ~sraGnRraVElL~Eidg~KiWlLdiHLKSfC 103 (109) ..+...|..+..-+++.++++.+.++||++.. T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~ 156 (301) T 1zwx_A 125 ADRLSNKGFAYVKIMKNGKPYHIIGTHTQADD 156 (301) T ss_dssp GGGGBCCEEEEEEEEETTEEEEEEEEECCCCC T ss_pred CCCCCCCEEEEEEEECCCEEEEEEEECCCCCC T ss_conf 31013621899999669959999995455678 No 7 >2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Probab=39.58 E-value=23 Score=16.76 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=27.2 Q ss_pred CHHCCCCEEEEEEEEECCEEEEEEEEEEEEEE Q ss_conf 30007713689999978908999987410135 Q gi|254780996|r 72 TPRMGNRKTVELLIEIDDQKVWLLNVHLKSSC 103 (109) Q Consensus 72 ~sraGnRraVElL~Eidg~KiWlLdiHLKSfC 103 (109) ..+..+|..+.+.+...++.+.+.++||++.. T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~ 156 (306) T 2ddr_A 125 PDNLSNKGFVYTKIKKNDRFVHVIGTHLQAED 156 (306) T ss_dssp ---CCCCEEEEEEEEETTEEEEEEEEECCCC- T ss_pred CCCCCCCEEEEEEEECCCCEEEEEEECCCCCC T ss_conf 65334523899998369958999996877665 No 8 >3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A Probab=37.67 E-value=25 Score=16.58 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=25.4 Q ss_pred HCCCCEEEEEEEEECCEEEEEEEEEEEEEEE Q ss_conf 0077136899999789089999874101353 Q gi|254780996|r 74 RMGNRKTVELLIEIDDQKVWLLNVHLKSSCV 104 (109) Q Consensus 74 raGnRraVElL~Eidg~KiWlLdiHLKSfCf 104 (109) +..+|..+...++.+|+.+.+.+.||++.+- T Consensus 146 ~~~~r~~~~~~~~~~~~~~~v~ntHl~~~~~ 176 (317) T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDS 176 (317) T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCS T ss_pred CCCCCCEEEEEEECCCEEEEEEEECCCCCCC T ss_conf 0147446999996299799999743555677 No 9 >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Probab=36.04 E-value=3.5 Score=21.56 Aligned_cols=56 Identities=16% Similarity=0.033 Sum_probs=39.4 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC Q ss_conf 73778872466787523852111123577765100012445640001133322478771 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP 68 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~ 68 (109) .|||||...-..+-|++...+=.+...|.+..+-+.. .+|+...-|.|.+++..++ T Consensus 53 ~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~---~~r~~i~~v~Q~~~lf~~T 108 (271) T 2ixe_A 53 PNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHH---YLHTQVAAVGQEPLLFGRS 108 (271) T ss_dssp STTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHH---HHHHHEEEECSSCCCCSSB T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH---HHHHHEEEEECCCEECCCC T ss_conf 9998699999999767758988899999998739999---9974178981256663756 No 10 >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Probab=33.40 E-value=3.8 Score=21.33 Aligned_cols=56 Identities=23% Similarity=0.140 Sum_probs=39.5 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC Q ss_conf 73778872466787523852111123577765100012445640001133322478771 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP 68 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~ 68 (109) -|||||...-..+-|.+.-++=.+...|.|..+-+.. .+|+...-|.|.+++..++ T Consensus 43 ~sGsGKSTLl~ll~gl~~p~~G~I~i~g~di~~~~~~---~lr~~i~~v~Q~~~lf~~T 98 (247) T 2ff7_A 43 RSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN---WLRRQVGVVLQDNVLLNRS 98 (247) T ss_dssp STTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHH---HHHHHEEEECSSCCCTTSB T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH---HHHHCEEEEECCCCCCCCC T ss_conf 9998299999999777748987899999993619989---9972629993688788874 No 11 >3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B Probab=28.11 E-value=17 Score=17.54 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=16.3 Q ss_pred CCCCCCCCCCHHCCCCEEEEEEEEECC Q ss_conf 478771012300077136899999789 Q gi|254780996|r 63 YPLPAPQEITPRMGNRKTVELLIEIDD 89 (109) Q Consensus 63 Ypl~~~~~~~sraGnRraVElL~Eidg 89 (109) .|+........|+-||| ||+.|..+. T Consensus 92 ~P~~~n~~~~~~a~NRR-VEI~i~~~~ 117 (138) T 3cyp_B 92 NPIAPNDSLENRMKNNR-VEIFFSTDA 117 (138) T ss_dssp SCSSCTTSHHHHHHHSE-EEEEEEEEH T ss_pred CCCCCCCCHHHHHHCCC-EEEEEECCH T ss_conf 75799939789987398-899997686 No 12 >2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2, NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch repeat, cysteine-rich; 2.00A {Homo sapiens} Probab=26.92 E-value=30 Score=16.09 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=18.3 Q ss_pred CCCHHCCCCEEEEEEEEECCEEE Q ss_conf 12300077136899999789089 Q gi|254780996|r 70 EITPRMGNRKTVELLIEIDDQKV 92 (109) Q Consensus 70 ~~~sraGnRraVElL~Eidg~Ki 92 (109) -++|--|+.+...+..|||.||- T Consensus 167 ~~~~~~~~~~~~~v~l~~dn~~c 189 (234) T 2oo4_A 167 MVYPYYGEVAGSKVFLEIDNRQC 189 (234) T ss_dssp CEEEEESSSEEEEEEEEEECTTH T ss_pred EEEECCCCCCCEEEEEEECCHHC T ss_conf 57735899765599999566001 No 13 >3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila} Probab=25.92 E-value=38 Score=15.44 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=15.5 Q ss_pred HCCCCCCCCCCHHCCCCEEEEEEEEE Q ss_conf 24787710123000771368999997 Q gi|254780996|r 62 SYPLPAPQEITPRMGNRKTVELLIEI 87 (109) Q Consensus 62 SYpl~~~~~~~sraGnRraVElL~Ei 87 (109) +.|.........|+-||| ||+-|-. T Consensus 136 ~~Pv~~n~t~egra~NRR-Vei~i~~ 160 (169) T 3ldt_A 136 KNAISDNAIIHGSAQNRR-IEIQWFT 160 (169) T ss_dssp TTSCCCTTTSCGGGGTSE-EEEEEEC T ss_pred CCCCCCCCCHHHHHHCCC-EEEEEEE T ss_conf 686799939889985498-8999995 No 14 >1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A* Probab=24.23 E-value=4.8 Score=20.76 Aligned_cols=55 Identities=24% Similarity=0.209 Sum_probs=34.6 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECC-HHHHHHHHCC Q ss_conf 737788724667875238521111235777651000124456400-0113332247 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKD-VARVLQVSYP 64 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~-~~rvLQ~SYp 64 (109) -|||||...--.+-|+..-++=.+.+.|.+..+-.-..-..+|+. ..-|.|...+ T Consensus 39 ~SGsGKSTLl~~i~gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~~ig~vfQ~~~L 94 (235) T 1l2t_A 39 PSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235) T ss_dssp STTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC T ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHHCCCEEEECCCCHH T ss_conf 99998999999998078998608999999988899889877526838998667201 No 15 >1lni_A RNAse SA, guanyl-specific ribonuclease SA; hydrolase; 1.00A {Streptomyces aureofaciens} SCOP: d.1.1.2 PDB: 1c54_A 1ay7_A 1rge_A* 1rgf_A 1rgg_A 1rgh_A 1t2h_A 1i70_A 1i8v_A 1ynv_X 1ucl_A 1ucj_A 1uck_A 1uci_A 1t2i_A 1box_A 1gmp_A* 1gmq_A 1gmr_A* 1rsn_A* ... Probab=24.12 E-value=29 Score=16.19 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=27.3 Q ss_pred CHHCCCCEEEEEEEEECCEEEEEEEEEEEEEEEEE Q ss_conf 30007713689999978908999987410135343 Q gi|254780996|r 72 TPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVK 106 (109) Q Consensus 72 ~sraGnRraVElL~Eidg~KiWlLdiHLKSfCfld 106 (109) ++..++|-|--|++--++..+|.-.=|-+|||-++ T Consensus 59 tpg~~~RGa~RIV~g~~~g~~YYT~DHY~sF~~I~ 93 (96) T 1lni_A 59 TPGARTRGTRRIITGEATQEDYYTGDHYATFSLID 93 (96) T ss_dssp CTTCSSCCSCEEEEESSTTCEEEESSTTSCCEEEE T ss_pred CCCCCCCCCCEEEECCCCCCEEECCCHHHHHEECC T ss_conf 99999999876997899987887577765060131 No 16 >3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13 Probab=21.75 E-value=4.8 Score=20.77 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=32.5 Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHH Q ss_conf 9973778872466787523852111123577765100012445640001133322 Q gi|254780996|r 8 IFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVS 62 (109) Q Consensus 8 ify~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~S 62 (109) +=.|||||...--.+-++..-++=.+...|.+...-.-..--.+|+...-|.|.. T Consensus 37 vG~SGsGKSTLlr~i~gL~~p~sG~I~~~g~~i~~~~~~~l~~~Rr~ig~VfQ~~ 91 (343) T 3dhw_C 37 IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91 (343) T ss_dssp EESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSC T ss_pred ECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCEEEEECCC T ss_conf 9999834999999997599999759999999999899899999860778990150 No 17 >2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ... Probab=20.06 E-value=40 Score=15.31 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=28.7 Q ss_pred CCCHHCCCCEEEEEEEEECCEEEEEEEEEEEEEEEEEEC Q ss_conf 123000771368999997890899998741013534304 Q gi|254780996|r 70 EITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKI 108 (109) Q Consensus 70 ~~~sraGnRraVElL~Eidg~KiWlLdiHLKSfCfldsi 108 (109) ++...-|.|-|--|++--|| .+|.-.=|-+||+-+.|- T Consensus 74 DV~~~gg~RGa~RIV~s~DG-~iYyT~DHY~TF~rI~~~ 111 (143) T 2c4b_A 74 DINYTSGFRNSDRILYSSDW-LIYKTTDAYQTFTKIRSS 111 (143) T ss_dssp ECSCCSSSCCSCEEEEETTC-CEEEESSTTSCCEEEECC T ss_pred ECCCCCCCCCCCEEEECCCC-CEEECCCHHHHHHHHHCC T ss_conf 64899988898769986998-689718645506605436 No 18 >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Probab=20.04 E-value=5.3 Score=20.49 Aligned_cols=54 Identities=19% Similarity=0.157 Sum_probs=25.5 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCC Q ss_conf 377887246678752385211112357776510001244564000113332247877 Q gi|254780996|r 11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPA 67 (109) Q Consensus 11 ~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~ 67 (109) |||||...-..+-|.++.++=.+...|.|..+-+.. .+|+...-|.|..++..+ T Consensus 89 sGsGKSTLl~ll~gl~~p~~G~I~i~g~~~~~~~~~---~lr~~i~~V~Q~~~lf~~ 142 (306) T 3nh6_A 89 SGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQA---SLRSHIGVVPQDTVLFND 142 (306) T ss_dssp SCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHH---HHHHTEEEECSSCCCCSE T ss_pred CCCHHHHHHHHHHCCCCCCCCEEEECCEECHHHCHH---HHHHHEEEECCCCCCCCC T ss_conf 998699999999656657887696777830442699---998535897646743556 No 19 >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Probab=20.04 E-value=20 Score=17.11 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=33.1 Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHH Q ss_conf 73778872466787523852111123577765100012445640001133322 Q gi|254780996|r 10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVS 62 (109) Q Consensus 10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~S 62 (109) -|||||...-..+-|++.-++=.+...|.|... .-.-|+...-|.|.. T Consensus 32 psGsGKSTllr~i~Gl~~p~~G~I~i~g~di~~-----~~~~~r~ig~vfQ~~ 79 (240) T 2onk_A 32 PTGAGKSVFLELIAGIVKPDRGEVRLNGADITP-----LPPERRGIGFVPQDY 79 (240) T ss_dssp CTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT-----SCTTTSCCBCCCSSC T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCEECCC-----CCHHHCCCEEECCCC T ss_conf 999819999999972999996299999999987-----658777711477865 Done!